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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047492 ID=TCONS_00047492|Name=TCONS_00047492|organism=Clytia hemisphaerica|type=transcript|length=1567bp
TTTTGAGCTTTTTCTCGTAAACTTCACCCTCGATCACCTTTTTTTCATCG
TTCAATGACAGtgagttttgaaaaatcgaGGCTTACCTGTTCGCCATTCT
CAAGGATTGGGTATATTTCAATAAGATTTTTGACGGATATATGTGATCCT
TAATCAGTTTTGCACGTTGATCGTGTAGGGTAAGCTCCAAACGAGTCGCA
ATAAGCTCAgtctttctttttgctttttgagtttcaatATGCTTTGAAAC
CGAATGTTAATCTTCTCCAGCAGGGATATTTGGGAGATCAATCCCCaaag
tttttttggatttcttcaGCATCACGAAATAATAACAAAAGAGAGATATG
TTACAAAAACAGAGGTACAAAAACACTAAAGACTATGTATTTACAAGAGT
AGGAAAGTATATTTACAAAAAACAGAGCAATAAAAAACACTTAACACTTT
CATCGTCCGAGGACACAACAATTACTACTTCGTCATCTACAAAGTTTTCT
GGTGAGCATCATCGTCAGATTCGTCGTCTGATATTATAATGGGTGGTACT
ATTGGCATGTCTTCCAAAAAATTGTCCAAGATCAAATTGTTTATAATCAT
CTCATCCACCACGTGGTTCACAAAATGTTCGTACATTTCAAAGACATTAT
TCAAATCGATATCAATGATGGCAAATGGAAACGTCAAGTCTAGAATGAAA
TCACCTAATAGTTAATAAATAATAGTCTAAATTAAACTAGTTCACGCTCG
ATCATCTTCTTTTTATCGGTTAGTTGGCTGACAGTGAGTTTTGAAGAATC
GAGACACTCTAACGCTTCCATAAGGTCTGTTTCAACCAGTTTGTTCTTCT
CCGTCAAATCTTCGATGATAAAACTCGATTCTGAAAGCTTCTGACAAGGG
ATATCGTGCGATAAATCTTCCATTGAGGTGTCATCAGAGCTTGCTTTAGG
GAAGNGAAGGAGAGAGGTCTCGTGTGATAAGTCTTCCATTGAGGTGTCAT
CAGAGCTTGCTTTAGGGAAGGTTCTGGGTGTTTGATCAGTCTCAAGGGCA
CGATGGATGATCGAGTTTGTATTaagaaattaaagattttagtttgaagt
tttttgCGAAGTTCATAGTTATCAATTTTTAGCCTTGAATCGTCCGTAAG
AATCAAGAAAGAATTCACCaacacaaaaatatcaaacttaTGAACAATTT
GAATAAATCCGTTTTTTGAGAAATCTTAGTTGGTTCGTCAACGATCCCAA
TCAAAAATAGTCATGCTTTCGTGAGTCTAAAAATTAAGGGTGATACTTTT
CTCCACTGGTCGAGTGACTGAGGTTCATATTTCACAAGGAGTGTAAAGTT
TTCggaaaaatcaatatcaataTAAGCTGCGTTAAATAGTTCATTGAACT
CTTTGGTCAGGATCAGCTTTACCAACCGTTTATCAATGAAGTCAAGGATT
GCTCTCAtataaagatattttttcaCAGCTTTCAGTTTGTGTTTCAGTTC
ACCTTTTTTGGTTGTAGAAGGTAGACACCAACTGGTGTTATACTTTAATT
GATTGAgtgccaaaaat Run BLAST on NCBI transcript from alignment at scaffold_13:172714..181251- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047492 ID=TCONS_00047492|Name=TCONS_00047492|organism=Clytia hemisphaerica|type=transcript|length=8538bp|location=Sequence derived from alignment at scaffold_13:172714..181251- (Clytia hemisphaerica)
TTTTGAGCTTTTTCTCGTAAACTTCACCCTCGATCACCTTTTTTTCATCG
TTCAATGACAGTGAGTTTTGAAAAATCGAGGCTTACCTGTTCGCCATTCT
CAAGGATTGGGTATATTTCAATAAGATTTTTGACGGATATATGTGATCCT
TAATCAGTTTTGCACGTTGATCGTGTAGGGTAAGCTCCAAACGAGTCGCA
ATAAGCTCAGTCTTTCTTTTTGCTTTTTGAGTTTCAATATGCTTTGAAAC
CGAATGTTAATCTTCTCCAGCAGGGATATTTGGGAGATCAATCCCCAAAG
TTTTTTTGGATTTCTTCAGCATCACGAAATAATAACAAAAGAGAGATATG
TTACAAAAACAGAGGTACAAAAACACTAAAGACTATGTATTTACAAGAGT
AGGAAAGTATATTTACAAAAAACAGAGCAATAAAAAACACTTAACACTTT
CATCGTCCGAGGACACAACAATTACTACTTCGTCATCTACAAAGTTTTCT
GGTGAGCATCATCGTCAGATTCGTCGTCTGATATTATAATGGGTGGTACT
ATTGGCATGTCTTCCAAAAAATTGTCCAAGATCAAATTGTTTATAATCAT
CTCATCCACCACGTGGTTCACAAAATGTTCGTACATTTCAAAGACATTAT
TCAAATCGATATCAATGATGGCAAATGGAAACGTCAAGTCTAGAATGAAA
TCACCTAATAGTTAATAAATAATAGTCTAAATTAAACTAGTTCACGCTCG
ATCATCTTCTTTTTATCGGTTAGTTGGCTGACAGTGAGTTTTGAAGAATC
GAGACACTCTAACGCTTCCATAAGGTCTCTCTTCTTCAACCAGTTTGTTC
TTCTCCGTCAAATCTTCGATGATAAAACTCGATTCTGAAAGCTTCTGACG
AAGGATATCGTGCGATAAATCTTCCATTGAGGTGTCATCAGAGCTTGCTT
TAGGGAAGGTTCTGGGTGTTTGATCAGTCTCAAGGGCACGATGGATGATC
GAGTTTGTATAAAGAAATTAAAGATTTTAGTTTGAAGGTTTTTGCAAAGT
TCATAGTTATGAATTTTTAGCCTTGAATCGTCCGTAAGAATCAAGAAAGA
ATTCACCAACACAAAAATATCAAACTTATGAACAATTTGAATAAATCCGT
TTTTCAGAAATCTTAGTTGGTTCGTCAACGATCCCAATCAAAAATAGTCA
TGCTTTCGTGAGTCTAAAAATTAAGGGTGATACTTTTCTCCACTGGTCGA
GTGACTGAGGCTCATATTTCACAAGGAGTGTAAAGTTTTCGGAAAAATCA
ATATCAATATAAGCTGCGTTAAATAGTTCATTAAACTCTTTGGTCAGGAT
CCGCTTTACTAACCGTTTATCAATGAAGTCAAGGATTGCTCTCATATAAA
GATATTTTTTCACAGTTTTCAGTTTGTGTTTCAGTTCACCTTTTTTTGCT
TTAGAAGGTAGACACCAACTGGTGTTATACTTTAATTGATTGAGTGCCAA
AAATTAAAAAAATGTGAGACATAAAATTTCACCTATATTTCCCTTGTGTA
AGCCACATTTTTGCCCACTTAACAAATTGTAAGTCTCAAATAAAAAATGT
AAAAAAATTTCTTGGAAGGGTAAGCCACATGACCAGTATGTAATGAATAG
CTAATTTCCTCAGCTTAACCATCAAAGCAATCCTAAGTGTAAGCCACATA
ATGTTCTCAAGTTATGGTCAATTTAGTGGCGGGCAGTAAAAAAGTCACAA
AAAGGGGTTCATTTTTGATTGGGATCCAACCCAAATGCTATTAAGACTCC
AATGACAAATAGACATCGGCGTTTCCCTCTAGTTTTTTAAGAAATTTATG
ATTGTCATGAAGAGAAGGTGATCTATATTCTCTGCCATTGTTGTAGCGGT
ACATCTTGGTGCTAAAAATGAAAATTGAGATTGCAGAGATTGTCGGTACT
CTAATAGAAATTAGATCTTGTATAGAGGGATCCTCAAGTTGTGAATTATT
TTTCTCGAGCAAGGAATGAGTAGTAGAAAGAGGTAGATATGAATTCTTGA
GTGTTGAAATGTGTTAGGAGTAGAGATTATACTCAATGAAATGCGTGACT
TTAAAGATTGGAAAGATTCAGTGGTAGGCTTAGGTTTGGAGAACGTACGG
TCCAGAGATAAAAAGTCTAGTCATGTGGGTTTGTGTTGGAACGTTGGAAT
AGTGTTATAGTGATAATAGTATACGAAATGATAGAATTGTTTTAAATTTA
GCTGGAATGTTATTGTTATTATAATTTAGTGTTTCAAGTGTTAAACTTTT
AAAAATAGAGAATCATTCCGGGGGGGGTACTAGGGCAAGATGGGTTACGG
GGATGCTCCGCTGGTCAGGGTACCTACCTTTTTTAACATTCACGAGTCCC
AGGTAGGGTCGCAAAAACACCAAAATAGAAAAATCAGTCCCTCGTAGGGT
GCCTATTTTTGGAAAATTTGGGGAAAAAGTAGAAAATTTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGTCACTTTTTTCGCAAATTTCAAGTCCCACGTAGGGTCCATTTTTC
GAACCTCAGCGGAGCACCCCCGTCGGTCGACAAGGGTAGTACCCCCCCCG
GGGAATCATTTGCGTTCTTTCAGCGTGTTAAAAAAAGGTGAGGGAGTGGT
CGTCAGATTTTCTTTGGAGGTAGATTGTGGTGTGTAAATGCTGGATTTGG
TATTGGTCTGACTGGGGGTTGCCATAGTATCTATTTCTGGTGTTCGCTGG
TCAATGGTGGTTCGGACTGTCATTTTCTAGGATTGTTGCAATTTGAGATT
GTGGGTTCTTGTATAGTGTTTTGGATTTCGTCTTTTGCGTGTTGGTTGTT
GAGTGGTGGCTGCAATGCCGGACAAAAGGTTGTAGACAAATGAAATTTCA
GTGAAAAATGATGAGAAATAGAGCATAATGACTCTTCAATGTGTCTGAAA
GGGATGGAAGTTAAGAAAAACACTTTTGAAGTCGTTGCATTGCTTTTGAA
TTGCTTTTGAGGGAACCACAAGCAAAAAACCAGCGTTTTGATACTGGTGT
AAACCAGTTAATCAAGCCCTTGTGGTTTGCCCTTGAGGTTAGACTTTCAA
AGACTTTGAACAGCTTTGGATAGGTTTGGAAAGCACCCAGAGCCTCTTGG
GAACTTGTCTTTGATCGATATTGAAGTATTTAGCAAATATTGCAGAAGTC
TACAAACCTTTTGTCCAGCATTGTGAGGGTTGCTATATTGAGCCATGTAT
TGTCGATTTTTGTTTTTTTCTGAGGATTGTGTGGTATGGATCTTCGTTTA
AGTGGGTATTGTCATGGCTCCCTTCTCCTTTCTTTTGAAGTAGATTGTGG
TTGTGGTAGATTGTGGATGTATTGGTTCTTTATACGAGGCTGTCTCCTCT
TCGTTTTGAATTGGATTTGGATTTGGATTTGGATTGGGGTTTGATTTGGG
ATGGACAAGTTTGGCCTTCTTTATGCAAATAAAATTTTTAATTGCTTCTA
CTCCATTTTTAAGATTCAGTACCAGATGTTTGATCTCTTCATTTGATTTC
TTAAAAAATAAGTTAGCTCGTTGGTCCCAGCATGAAGTTAAAAACGACGC
GGACTTCATGGTCGGATTTGTTTTCGGTTTTATAGTACTCTCCTTCAGGT
TGCTAAATTGATTGAAGTAGCGTAGCGATCGTAAAAATGACTCAGTATGA
AATTAAACATGTTACAAAGGTGAGGCTCTGACCTGCCAAACTTACCTGCA
TGGAAGTGCAAGTCTTCGACACAACAAGCAAAAGAGCTCAACAATACTAG
TGTGAATGTAGGCTGGCCTAGGCAAAATCACCTCATCGCCAAGCCCAAGC
ATGGCAGCAATCCTTAGCATATCCCTCTTTCGGAATCTGCAGTCCACCCA
GCATTCTTTATCACTCCACAAGTCGAAATTGAAGTTTCCCCACCTAGCAC
CATAGTCCTTATCAACTGCACCTACAAAATTTACCTCTGTAACATCAGCC
AGCATGAGGTATTCTTCATCAGAAATAACTCCATTTACATATGCATCTCT
TCCAGCCATGATAACCTAATTAAAACTTTTCACTTACTGCTTTCAAAGTC
GAAAGAATAAAGTCTCAAAGAAGAGGGAGGGAGGGTAAACAACTTGCTCT
CAATGGGGTCACCCTGCGTGTTGCCTTCGGATCATAGAATTTCGACACCA
CCGAGGACGAAGAGTCTGGACGGCGTATTATAGCAATTCGAGGCAAGTGT
TGCTATTGAGGGGCAGATGACTTTTACGTTGTGTAAGAATGCTTCACGGT
TGAAATCCCGGTAAAATGTGTAAAATGGGAATAACTCGCGAAAAAAATAG
ATTGTCAAAAAAATGAAACTGAAGTTGAGAAATGTTTGAATGATCTTTTT
TTGTGACCTTTTGTGACTCTATCTCAAGAAATTATTTAAGGTCAAAGTAT
TAGGTTTGTGACACCTTGGCCAGGTGTTCTTCTTTAATTTTAACCCGTTA
TTCAAAAGTCTCTTAAAGGCGGAGATCTCTTAAAGGCGGAGATCTCTAAT
TAGCGGATACCTCTAATTAGCGGATACTAATATGACTCCCTGATGTTGTC
CGTTGATTAGAGTCTCCACTGTAATTTATCTGCTACTTATTTCTTCTTTT
TATCAGGCCTGCAAAAATTTGATCAAGAATTTTGAATGAAAATCATGGCA
TTCCTAATCTAAGGTCTAGCAAACTTCTTTCTAAATTGAAAAACCAGCTA
AAGTGAATGAAACGGAACCAGTGCATTGTTTTGTTTAGCAAGTTGAAGAG
TTTTCGTGGGGATTTATATTTTTGGAGTGACACCATAAATAAAGTTAAAA
TAAAATTATTTACTTATTTGATGATTTTTAGAAGTTTTCATTCCCTTAAT
TCCGTGGATGGGAAACGATGTCCATTCGGGAATTGATGATTTGAAGCGAC
GATCGTTTGACCATGATGATGGTTGTTAGTCTTTCTCAATATCTTTTCAA
CAAATTTTTGTTCGAGCAGAACATTTTCGTTGTTCAATTTTTGCAAATCT
GCTTTTTGTCTTTTCATTAAAATATTGGCTTTGTTGATGTTATGTTCATC
ATATTGGTCTTTTCGTCGTTTGTTTCTTGGACAGAGGCCAGCATCTATGA
GATGAGAATATATTATATATTTAGGAACAACTAGACGGTACCCGTCGTCG
CAAACGCCGGTTAAGTGATTTAGATATCGTCTAGATCATTCGATATAGCT
GACATTATAAGATGTTGACAAAAATAGATACCTCCACGTTGCTCTTCAAC
TATGTATGGCTGACATCAAATTTCATTTCCCAATTTCCATTGACGTTTCT
GGTTATTTGAATATTTTTCTTATTATTTTTACTGAAAATGAAAAGAGCAT
ATAGCGTATGACATTAATTAAATCAACACAAATATTTGTTTTCTTCTCGA
TCCCTAGTCGTCATCCATTAATAATAGCAGTCACCATTATTCGTCATGAA
TTTCCGAAATAACAGAACGTGATGCCGAAAATTTTACCTAGTTCATCATC
TAGCTTGCTCTATAATTTTATAACTGGCATAAATTTATGGAACCAGAAAA
TAACACAACATTGATTTAAAATTTTAATCACTTATTTTCTTTGTTCAATA
TTTACATAATGATAATGCAGTAATCTAATATAAATATCTTAAAATAACAG
AACAGATTAAAAGACCAGATTTAAAGGTTTATTTCCTCAGACAAAACTTT
GTCATCACTGGAAATACTGAATAGAATGAACTAAATTTTATTTGAAATAT
TCAAGAAATCTTATTCATCACTGGCTTCAGAGCTTTCTAATCTCAAAACG
AATTAAATAAATTAAAGATCACAATGATAAATACACAAAATAAAAAAATA
ATGTATACTTTTTAAAAGGGCCTTAAATTCTATAAGGCGATCGAAAAAGT
GATTAAAAGACTGAATTGAACAAAGTGCTAAAAAAACTGAAACTTATGCT
CACAAATCAAAGCTACTATCTTACGATTTTCCTCAAGAAATACACAATCA
TCACTAGGAAAATATAGTAGAGAGAAATGCTCTTACGTGGATAGGCGGTT
GTCGAATAATGAACAGTTGACGAGTGTGCAGCAACAGCAGCGAATAACGA
TATCAAAGAAAAATGTATAAAAACGACTGTATAAAAACGATTAGATTAGG
TTATTTGTAAATGAATCAAATTTTTCCACTAGCTTTGGGTGCTCTTTGCA
GGCTTTTTGATAAGCTGACTTTTTTGTTCGATTTTGAGCTTTTTCTCGTA
AACTTCACCCTCGATCACCTTTTTTTCATCGTTCAGTGACAGTGAGTTTT
GATGAATTGAACTATTACCTGTTCGCCATTCGCAAGGATTGAGTATATTT
CAATAAGATATTATTATTATTATTAACATCTCTTTTATCACCATAAAGCT
ACGGTATATATATAAAGGTTTTTGAAGAAAAAAAAAAATATACATCGTTT
TCGTTTTTCTTAGACAATATGTGATCCTTAATCAGTTTTGCACGCCGATC
GTGCAGGGTAAGCTCCAAACGAGTCGCAATAAACTCAGTCTTTCTTTTTG
CTTTTTGAGTTTCAATATGCTTTGAAAGCGAATGTTAATCTTCTCCAGCA
TGGAAATTTGGGAGATCAATCCCCAAAGATTTTTTGGATTTCTTCAGCAT
CAAGAAATAATAGTCAATAAATAATCTAGCCTAATTTAAATAATCTAGTT
CACGCTGGATCATCTTCTTTTCATCTGTCAGATGGCTGACAGTGAGTTTT
GAAGAATCGAGACACTCTAAACGCTTCCATAAGGTCTGTTTAAACCAGTT
TGTTCTCTTCTCCGTCAAATCTTCGATGATAAAACTCGATACTGAAAGCT
TCTGACGAAGGATATCGTGCGATAAATCTTCCATTGAAGTGNACCGAATG
CTTTGAAACCGAATGTTAATCTTCTCCAGCAGGGATATTTGGGAGATCAA
TCCCCAAAGTTTTTTTGGATTTCTTCAGCATCACGAAATAATAACAAAAG
AGAGATATGTTACAAACTATCTTCATTTTTCTCCAAGCCACTAAATCATG
ATTCAAAATAAATAAACAACACAAAAATTTGATTCAAATTTTTGTGTTGT
TTATTTATTTTGAAAAAGATATGTTACAAAAACAGAGGTACAAAAACACT
AAAGACTATGTATTTACAAGAGTAGGAAAGTATATTTACAAAAAACAGAG
CAATAAAAAACACTAAACACTTTCATCGTCCGAGGACACAACAATTACTA
CTTTGTCATCTACAAAGTTTTCTGGTGAGCAATATCCATCATCGTCAGAT
TCGTCTGATGATATTATAATGGATTCTATTGGCATGTCTTCTAAAAAATT
GTCCAAAATTAAATTGTTTATTATCATATCTTCCACCACGTGGTCCACAA
AATTTTCGTACATTTGAAATACATGATCCAAATCAATATCAATTATGGCA
AATGGAAACGTCAAGTCTAGAATGAAATCACCTAATAGTTAATAAATAAT
CTAGTCTAAATTAAACTAGTTCACGCTCGATCATCTTCTTTTTATCGGTT
AGTTGGCTGACAGTGAGTTTCGAGACACTCTGACGCTTCCATAAGGTCTG
TTTCAACCAGTTTGTTCTTCTCCGTCAAATCTTCGATGATAAAACTCGAT
TCTGAAAGCTTCTGACAAGGGATATCGTGCGATAAATCTTCCATTGAGGT
GTCATCAGAGCTTGCTTTAGGGAAGNGAAGGAGAGAGGTCTCGTGTGATA
AGTCTTCCATTGAGGTGTCATCAGAGCTTGCTTTAGGGAAGGTTCTGGGT
GTTTGATCAGTCTCAAGGGCACGATGGATGATCGAGTTTGTATTAAGAAA
TTAAAGATTTTAGTTTGAAGTTTTTTGCGAAGTTCATAGTTATCAATTTT
TAGCCTTGAATCGTCCGTAAGAATCAAGAAAGAATTCACCAACACAAAAA
TATCAAACTTATGAACAATTTGAATAAATCCGTTTTTTGAGAAATCTTAG
TTGGTTCGTCAACGATCCCAATCAAAAATAGTCATGCTTTCGTGAGTCTA
AAAATTAAGGGTGATACTTTTCTCCACTGGTCGAGTGACTGAGGTTCATA
TTTCACAAGGAGTGTAAAGTTTTCGGAAAAATCAATATCAATATAAGCTG
CGTTAAATAGTTCATTGAACTCTTTGGTCAGGATCAGCTTTACCAACCGT
TTATCAATGAAGTCAAGGATTGCTCTCATATAAAGATATTTTTTCACAGC
TTTCAGTTTGTGTTTCAGTTCACCTTTTTTGGTTGTAGAAGGTAGACACC
AACTGGTGTTATACTTTAATTGATTGAGTGCCAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047492-exon-scaffold_13-1575043694:180428..181251 | TCONS_00047492-exon-scaffold_13-1575043694:180428..181251 | Clytia hemisphaerica | exon |
| TCONS_00047492-exon-scaffold_13-1575043694:172714..173456 | TCONS_00047492-exon-scaffold_13-1575043694:172714..173456 | Clytia hemisphaerica | exon |
| TCONS_00047492-exon-scaffold_13-1510915933:180428..181251 | TCONS_00047492-exon-scaffold_13-1510915933:180428..181251 | Clytia hemisphaerica | exon |
| TCONS_00047492-exon-scaffold_13-1510915933:172714..173456 | TCONS_00047492-exon-scaffold_13-1510915933:172714..173456 | Clytia hemisphaerica | exon |
| TCONS_00047492-exon-scaffold_13-1491911889:180428..181251 | TCONS_00047492-exon-scaffold_13-1491911889:180428..181251 | Clytia hemisphaerica | exon |
| TCONS_00047492-exon-scaffold_13-1491911889:172714..173456 | TCONS_00047492-exon-scaffold_13-1491911889:172714..173456 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:172714..181251 - |
Blast
The following BLAST results are available for this feature:
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