TCONS_00047494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047494
Unique NameTCONS_00047494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047494 ID=TCONS_00047494|Name=TCONS_00047494|organism=Clytia hemisphaerica|type=transcript|length=2539bp
CGACAAgggtagtccccccccccccaggctAGGCGCTCACAAGGTAAGTC
TAACTTTCCTTGTTCCTCATCTGTCGGTGAATTTGATTCCTTCTCGTGGA
GTATTCTTTCTTTCTTGAATTTGTGCTCGATGGGTTATTTCTGAATGAAA
CGATAGATTCACCAGCAACTTCATCCGTATGTGAAAATGATTGACCAAAT
GATTTGAAAGTActtgttgtatttttttttttcttgaatttgtgCTCGAT
GAGCGGTTCCTGAACGAAACGGTAGATTCATCCGAAACGAACCCAACTTC
ATTCTTGTTTGCCAATGATTTGAAGGAACTTGTTTCATACGTTGTTACAC
CCCCAAAGACAGGACGACGTTGGTTAGAAGTGTTTTTGAAGACTTGGTCA
GCAATAAAGACAGAATGTCCAAAAGCTGACCTTCTTGAATATCTTCTTCC
TCCATCTTCGTACAGAATCTAAATTCAAAgagtaaattaattttttttaa
tgaaaggtACTGAAAACGCTAAACTGGATCAGACGATTCCatccttttca
aacaaattAACAAATCATTTATACTAATGAAATATTATACTTGAAACAAT
GTCATCAAATGACTACAGAATTCTCCATGTctgtattttccaaaaatttc
aattgcACTTGTACAACAATGGCACgcagaaaaaaactttatacTTGACA
CTACCACTAGCAGTGACATTTCTTATAATAACACTgatatttaaaagaaa
actaaTGATCGTCTTCCTCCATGCTGCCATCAAAATATGATTAGCTTACT
TTTTGTTCGACTAAGTTCAGCCTAAGTATCTTCCTTTGCCACTACGTGCT
GGATGTTAAATCCTTTTCTCTCCAACGCCAAAAAAAAATGAACGCATGGT
GATGATTATTACTGTTTTCGCCTGTGTAGGCTAGAAAGGTAATTGAAAAT
GTGTCAAAggctgagtgttgtgtaataaAACTTATGTTACGAATCTACga
atcttgaaaagaaattagCTGGGGGTTATTttccttagccccccccctga
aaaatgctgggggctggacccctctgcacactatggttATCCACTGCGCC
AACTGGCCTTAGGTTACATTTATTGGGAAATGTTTTATTCTATGTATAAA
TGGCGAAGGCCCCTTAAATGGATTATTTTCAGAAGAGGAAGTTTATGAAT
AATTAGGAAAATATAGTAGAGAGAAATTCTCTTACCTGGATAGGCGATTG
TCGAATAATGAATAGTTGACGAGTGTGCAGCAACAGCAGCGAATAACGAT
ATCaaagaaaaatgtataaaaacgACTGTATAAAAACGATTAGATTAGGT
TATTTGTAGAGAAATTAAAACTTTCCACTAGCTTTGGGTGCTATTTTTTA
CAGGCTTTTTGATAAGCTTACTTTGTTGTTCGATTTTGAGCTTTTTCTCG
TAAACTTCACCCTCGATCACCTTTTTTTCATCGTTCAATGACAGtgagtt
ttgaaaaatcgaGGCTTACCTGTTCGCCATTCTCAAGGATTGGGTATATT
TCAATAAGATTTTTGACGGATATATGTGATCCTTAATCAGTTTTGCACGT
TGATCGTGTAGGGTAAGCTCCAAACGAGTCGCAATAAGCTCAgtctttct
ttttgctttttgagtttcaatATGCTTTGAAACCGAATGTTAATCTTCTC
CAGCAGGGATATTTGGGAGATCAATCCCCaaagtttttttggatttcttc
aGCATCACGAAATAATAACAAAAGAGAGATATGTTACAAAAACAGAGGTA
CAAAAACACTAAAGACTATGTATTTACAAGAGTAGGAAAGTATATTTACA
AAAAACAGAGCAATAAAAAACACTTAACACTTTCATCGTCCGAGGACACA
ACAATTACTACTTCGTCATCTACAAAGTTTTCTGGTGAGCATCATCGTCA
GATTCGTCGTCTGATATTATAATGGGTGGTACTATTGGCATGTCTTCCAA
AAAATTGTCCAAGATCAAATTGTTTATAATCATCTCATCCACCACGTGGT
TCACAAAATGTTCGTACATTTCAAAGACATTATTCAAATCGATATCAATG
ATGGCAAATGGAAACGTCAAGTCTAGAATGAAATCACCTAATAGTTAATA
AATAATAGTCTAAATTAAACTAGTTCACGCTCGATCATCTTCTTTTTATC
GGTTAGTTGGCTGACAGTGAGTTTTGAAGAATCGAGACACTCTAACGCTT
CCATAAGGTCTCTCTTCTTCAACCAGTTTGTTCTTCTCCGTCAAATCTTC
GATGATAAAACTCGATTCTGAAAGCTTCTGACGAAGGATATCGTGCGATA
AATCTTCCATTGAGGTGTCATCAGAGCTTGCTTTAGGGAAGGTTCTGGGT
GTTTGATCAGTCTCAAGGGCACGATGGATGATCGAGTTTGTATaaagaaa
ttaaagattttagttTGAAGGTTTTTGCAAAGttcatagttatgaatttt
tagCCTTGAATCGTCCGTAAGAATCAAGAAAGAATTCAC
Run BLAST on NCBI

transcript from alignment at scaffold_13:180146..182684-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047494 ID=TCONS_00047494|Name=TCONS_00047494|organism=Clytia hemisphaerica|type=transcript|length=2539bp|location=Sequence derived from alignment at scaffold_13:180146..182684- (Clytia hemisphaerica)
CGACAAGGGTAGTCCCCCCCCCCCCAGGCTAGGCGCTCACAAGGTAAGTC TAACTTTCCTTGTTCCTCATCTGTCGGTGAATTTGATTCCTTCTCGTGGA GTATTCTTTCTTTCTTGAATTTGTGCTCGATGGGTTATTTCTGAATGAAA CGATAGATTCACCAGCAACTTCATCCGTATGTGAAAATGATTGACCAAAT GATTTGAAAGTACTTGTTGTATTTTTTTTTTTCTTGAATTTGTGCTCGAT GAGCGGTTCCTGAACGAAACGGTAGATTCATCCGAAACGAACCCAACTTC ATTCTTGTTTGCCAATGATTTGAAGGAACTTGTTTCATACGTTGTTACAC CCCCAAAGACAGGACGACGTTGGTTAGAAGTGTTTTTGAAGACTTGGTCA GCAATAAAGACAGAATGTCCAAAAGCTGACCTTCTTGAATATCTTCTTCC TCCATCTTCGTACAGAATCTAAATTCAAAGAGTAAATTAATTTTTTTTAA TGAAAGGTACTGAAAACGCTAAACTGGATCAGACGATTCCATCCTTTTCA AACAAATTAACAAATCATTTATACTAATGAAATATTATACTTGAAACAAT GTCATCAAATGACTACAGAATTCTCCATGTCTGTATTTTCCAAAAATTTC AATTGCACTTGTACAACAATGGCACGCAGAAAAAAACTTTATACTTGACA CTACCACTAGCAGTGACATTTCTTATAATAACACTGATATTTAAAAGAAA ACTAATGATCGTCTTCCTCCATGCTGCCATCAAAATATGATTAGCTTACT TTTTGTTCGACTAAGTTCAGCCTAAGTATCTTCCTTTGCCACTACGTGCT GGATGTTAAATCCTTTTCTCTCCAACGCCAAAAAAAAATGAACGCATGGT GATGATTATTACTGTTTTCGCCTGTGTAGGCTAGAAAGGTAATTGAAAAT GTGTCAAAGGCTGAGTGTTGTGTAATAAAACTTATGTTACGAATCTACGA ATCTTGAAAAGAAATTAGCTGGGGGTTATTTTCCTTAGCCCCCCCCCTGA AAAATGCTGGGGGCTGGACCCCTCTGCACACTATGGTTATCCACTGCGCC AACTGGCCTTAGGTTACATTTATTGGGAAATGTTTTATTCTATGTATAAA TGGCGAAGGCCCCTTAAATGGATTATTTTCAGAAGAGGAAGTTTATGAAT AATTAGGAAAATATAGTAGAGAGAAATTCTCTTACCTGGATAGGCGATTG TCGAATAATGAATAGTTGACGAGTGTGCAGCAACAGCAGCGAATAACGAT ATCAAAGAAAAATGTATAAAAACGACTGTATAAAAACGATTAGATTAGGT TATTTGTAGAGAAATTAAAACTTTCCACTAGCTTTGGGTGCTATTTTTTA CAGGCTTTTTGATAAGCTTACTTTGTTGTTCGATTTTGAGCTTTTTCTCG TAAACTTCACCCTCGATCACCTTTTTTTCATCGTTCAATGACAGTGAGTT TTGAAAAATCGAGGCTTACCTGTTCGCCATTCTCAAGGATTGGGTATATT TCAATAAGATTTTTGACGGATATATGTGATCCTTAATCAGTTTTGCACGT TGATCGTGTAGGGTAAGCTCCAAACGAGTCGCAATAAGCTCAGTCTTTCT TTTTGCTTTTTGAGTTTCAATATGCTTTGAAACCGAATGTTAATCTTCTC CAGCAGGGATATTTGGGAGATCAATCCCCAAAGTTTTTTTGGATTTCTTC AGCATCACGAAATAATAACAAAAGAGAGATATGTTACAAAAACAGAGGTA CAAAAACACTAAAGACTATGTATTTACAAGAGTAGGAAAGTATATTTACA AAAAACAGAGCAATAAAAAACACTTAACACTTTCATCGTCCGAGGACACA ACAATTACTACTTCGTCATCTACAAAGTTTTCTGGTGAGCATCATCGTCA GATTCGTCGTCTGATATTATAATGGGTGGTACTATTGGCATGTCTTCCAA AAAATTGTCCAAGATCAAATTGTTTATAATCATCTCATCCACCACGTGGT TCACAAAATGTTCGTACATTTCAAAGACATTATTCAAATCGATATCAATG ATGGCAAATGGAAACGTCAAGTCTAGAATGAAATCACCTAATAGTTAATA AATAATAGTCTAAATTAAACTAGTTCACGCTCGATCATCTTCTTTTTATC GGTTAGTTGGCTGACAGTGAGTTTTGAAGAATCGAGACACTCTAACGCTT CCATAAGGTCTCTCTTCTTCAACCAGTTTGTTCTTCTCCGTCAAATCTTC GATGATAAAACTCGATTCTGAAAGCTTCTGACGAAGGATATCGTGCGATA AATCTTCCATTGAGGTGTCATCAGAGCTTGCTTTAGGGAAGGTTCTGGGT GTTTGATCAGTCTCAAGGGCACGATGGATGATCGAGTTTGTATAAAGAAA TTAAAGATTTTAGTTTGAAGGTTTTTGCAAAGTTCATAGTTATGAATTTT TAGCCTTGAATCGTCCGTAAGAATCAAGAAAGAATTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030250XLOC_030250Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047494-exon-scaffold_13-1575043694:180146..182684TCONS_00047494-exon-scaffold_13-1575043694:180146..182684Clytia hemisphaericaexon
TCONS_00047494-exon-scaffold_13-1510915933:180146..182684TCONS_00047494-exon-scaffold_13-1510915933:180146..182684Clytia hemisphaericaexon
TCONS_00047494-exon-scaffold_13-1491911889:180146..182684TCONS_00047494-exon-scaffold_13-1491911889:180146..182684Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:180146..182684 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0930408 0.0461413 0.158835 0.172514 0.101219 0.146726 0.117456 0.137617 0 0 0.0774872 0.150026 0.0535152 0.128619 0.0511569 0.155693 0.0800155 0.0206617 0.0809335 0.0261911 0.0979949 0.130982 0 0.0819256 0.192957 0.352933 0 0.0543056 0.0342238 0.0428763
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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