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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047576 ID=TCONS_00047576|Name=TCONS_00047576|organism=Clytia hemisphaerica|type=transcript|length=474bp
aaaaaagattgatgtAGCCTCGTCGGTTGCACCACTATTCAAAAAAACAA
CACAAGAACTCAAGAAGGAACAAAATGGCGTCCGCAACCAGAGCTGTCCA
AAAACTTCGAAGTGCACTTGCAGGGGCTGAATACAACATCGCTGTGAGAT
ATTCAGTCAGTCAACAGCCAAGaacACAACCACCAGCCAACCTTCCGTTC
GGTGTAAATCACGAATTGAGTGACAACTATTACGTGCAAAGAGACGGGCG
TAGGGCGCATGCACCACCTACTGTTGTCAAGCCTACAGTGAAACAGATTG
GGGCTGGTGGAGCTGTAGCCGCTGGAGAATTTAAACCCTTGACTCCAGGA
GATGTTTGCGATTGCTCGTGAAGAATAACCTTTGTAATTATTTTATccct
attttttgagaattgtAAGAAAGATTGATATAATTTGACATAATTTgtta
tcgcattttttttttcaatctcgG Run BLAST on NCBI transcript from alignment at scaffold_132:88008..96007- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047576 ID=TCONS_00047576|Name=TCONS_00047576|organism=Clytia hemisphaerica|type=transcript|length=8000bp|location=Sequence derived from alignment at scaffold_132:88008..96007- (Clytia hemisphaerica)
AAAAAAGATTGATGTAGCCTCGTCGGTTGCACCACTATTCAAAAAAACAA
CACAAGAACTCAAGAAGGAACAAAATGGCGTCCGCAACCAGAGCTGTCCA
AAAACTTCGAAGTGCACTTGCAGGGGTAAGAAAGTAAATGATTTTGATCT
TATGAAAACTTTAGAAGTTTCTCAGCGAGTGGTCTCTTTAAGGTATATCA
AAATTAATTTCGAAAACATCCAGCTACTACAAGGGCCCAGCCCAGGGGTT
TTTCCAAGCACCAAGCCAATGCGGCAAAATGGCAATGCCCAATAATGGCA
ATGCCTCCGTCAGTAGGAGTAGGGTGCGCACTCGTCAGGATTTTTTGCAC
GGAACGAGGGAGAATTTACAAAAATGAACTTAAATGCATTAGTACTTACC
TTTAAAATCATCCAAATCTGTTCATTATTTTTTTTTTCAATCAGGAATAA
TAATTATCAGGGGAAAAAGTAAAAAAAACTGCATCAGGTATCTATTTTCT
TTCCAAAGATATTGATGTTTTTTTGACGTCAAGGTGAAAACATGTCTTAG
CGCTGACCACGGCACCGGAAAATTCTCGACCCACATTGAAACAAATGGCT
GCTATTGAGCTGGTTCATCTTGGGGTCTTCTGAAAAGCTTTTCAATCGCG
GTTTTTTTTAGTAAAAATATTTTACTAATATTTCAACATTTTAAACGGCA
AAAAAATGAGTAATATATCATTGTTTAGCGCCACGCTATTAAACAAAAGA
AAAAAAGAAACATCTTTAGCGGCTCTTTTAAGGAACACAATGATATATAT
TTCTGCTATCCCACAACTCGCAGTCGAAAAATTGAGCAAAATATTGAGAA
TATTTCTGTGGTGAAGTTTCTCAAATTTCCTTATAGAAATCCCATGTTTG
GCACTCCTACACATTGAGTTTTTAACTAAGGCGTAAGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTTCA
GGGGGGCAAAGACCCCAAAAGCTTAGCATATTTTTGTCTTAACAGCACTT
TAAAACGGTTAAAGTTGAATGAATTTACAGAATTTATCAATGAACAAAAT
GAATGAATTCCTAAACTAAAAAATTATGTAAAGAACTGGATAAAAAACTC
CACCAGAATTTTTTCAAAATCATTCGAAAGACACTCAAAAGAGTGTGATT
TTTCAAAAGTCTGAGCAAATTTTGTCTCAACTAGCACTTTGAATCAGCTA
AAATCAGCTCAATTTCATCTTCAATATTAGGAGAAGGGTGATGATATATA
AAACTCAATTAAAAGAATCAACTGCAGCTATAATAACTGAGTTAACTCTA
ACTATGAGTTTCATTCATTTTAATCCTTTTAATGGGTTTAAAAAAGGGGA
AGAGAGACGTGTTTTTACTTTAGTCCATTTCTTCAGACTAGCACTCACTT
ATTATAAGCCTGTGCAGTTTTTATTTTTCTTTAAATTACCTATACATTAA
CTGAGGAAATTCCCTGACTGTCCAACATGGTCCAATCAATGCCATCATCA
TATCCTCCACATGCATGAAGATAAGAATCCCGTACTGTAAAAGTTGGTAT
CTGATAGACCAATTCCATGTGATGTCATTTTCACTCACGATCAGCTATTT
TTTCTAAGAGAATGGCATAAAGAATATGTACAGGATGATTTAGTAACGCC
TTGCTTAGCTCCCCAAGGCTTAATTAGTGTTCCTGTCGTTTGTTTTTATT
GTGTTGGTGAAAATTATGTCAGTTAGGAACAGACAGTTTGTTTGAGATTT
GGTTGACTATCATCAACCTAACTGGATTTCGCTGCGTCTGTCTATTATCA
ACATCTCTCATCTAATTCTGACACCCTTCTAGAGGGTTAAAAGGAAATAT
CTTTTTATCGCACAAATGAAACATATCATAGACTGATTGATAGATTTAAT
AGATCAGGATTCTTTTACTACTAGTTAGGATATCATGTTGAATAATTAAA
AAATTCAGTATCAAAACAACGATAAGAAAAAAATTNTAGGATATCATGTT
GAATAATTAAAAAATTCAGTATCAAAACAACGGTGAGTAAAATGCACAAT
TAAAATAATTATGCATTAATGGCACCGCATTAATGTGTCATGGTTTCGAT
GCTGGAAAATGTTTTAGTTATTTGGGAGAATGTGATGGTCTCCACAACAG
TTACCTAGAGACAAGATAATTTATCACGTTTTTACTGGCTGAGGGAAATT
AATATATGTGGAGTAATTTGTTATTCAATAGACCGTCGCATTCTCCTAAA
CAACTATTGGAATGTGTCCATTTGCTTTAAGTACAGTACTGAGCAAGGGG
GAGCTAAGATGAAAATCCTCAACTTTTATAGGCAAGGATTTTTTCGTATT
TTTGGGCAACTTACACAACCAGTTCCATCATAGAAATCATTTGCTGAAAT
AGGCTTTCAGAGTTAGCTCGGTACAGGATCTTTGACTCCCAATCAGGGTA
TTTTTATTTTGCCCAACTGTTTTAATTTTGTAAATCATAAATGATATTTC
ATCTCACTTATTTTGCCATTTTCCAATCTTATATTATTTCTGTTAAATCT
GAAAAAGCCTCATAGATTACTAAGGGAAAATATGTTCCCGTTTCTGTATA
TTTTCTATTTTCTACATTAACTCTGTTCTTTGATATTTTAGATATATAAC
TCGATCAAAATATTATCACGTATTTCCCTTCTTTTTTTCAGGCTGAATAC
AACATCGCTGTGAGATATTCAGTCAGTCAACAGCCAAGGTAAGAATCTGA
TAACAACGACCCGGTCCATAGTGGGCACCCCCCCCTGGATTCTGGGGGGG
GGGGTGGGGGTTTTCAGATTTTTAAAAATAGGGGGGGGTTGGGTTGATGA
GAAATTTCAGGTGGGGGTAACCCTATGTAGGCGGGGGGGACCTTTTTCAG
GTGGGGGTTCGAAGATTTTACAAATTTAGGTGGGGGTTGCTGAAAAAGGC
GGGGGGTGGGCTGATATGAGATTTCAGGGGGGGGTAACCCTATGTAGGCG
GGGGGGACCTTTTTCAGGTGGGGGTTCGAAGATTTTACAAATTTAGGTGG
GGGTTGCTGAAAAAGGCGGGGGGTGGGCTGATATGAGATTTCAGGGGGGG
GTAACCCTATGTAGGCGGGGGGGACCTTTTTCAGGTGGGGGTTCGAAGAT
TTTACAAATTTAGGTGGGGGTTGCTGAAAAAGGCGGGGGGTGGGCTGATA
TGAGATTTCAGGGGGGGGTAACCCTATGTAGGCGGGGGGGACCTTTTTCA
GGTGGGGGTTCGAAGATTTTACAAATTTAGGTGGGGGTTGCTGAAAAAGG
CGGGGGGTGGGCTGATATGAGATTTCAGGTGGGGGTAACCCTATGTAGGT
GGGGGTGACCTTTTTCAGGTGGGGGTTGGAGGGGTGTTGCCCACTATGGA
CCCTCTGTCACTATCTAGACCTTTCCACACCATTGCAAATAACAATTGCA
GAAAGATTTTCTCATTTACAGTATATTGAAAATAATAATTGATTCTGTCT
TGCTTGAGACTCTTACCTCGCTCTCAAAATGTTGCTATAGTGATTGATTC
CCAGAGTAATTCATAAGACATTTACTGAGTTATAACAGTTANATAATTGA
TTCCAAGAGTAATTAATAAGACATTTACTGAGTTAGAACAGTTGAACTTG
AAGACCCAAGGGATAGCTTCAAAACTGGACAGTTGTTGCACTCAAAATAA
TTTATGAAAAGGTCTATTTTCGCCCTAAAATGACGTTTTTTATCCCATTT
GATGCATTTGATGTGTTTTTTTTATTTCATTCCCACCGGGTCAAAATCAT
TCCCACCGGTTCAATTGATATGAAAATGTGTCCCTCTTGTGGATCCTACT
CCTTAAATGCAGTAGGATTTGTTTGTAAGTAATTAAGCAAAGTGCTATGG
AAGCGCAGTCTGGATTTTCATTAACATAATGTTTTTATAGCGTAGCTCTG
TACACCCCTTTCTCACAACCCCGTTGGAACTTTTTTCCCAGTGGGGATAA
AAATTCTTATGAAATCCCAATGGGATAGGAATTCTATGTCTTCTATTGCT
CTACGGTTTCAATTCATCCAGTGGGGATGGTTTTGGAGTACAATTTTTAA
ACATTGAATTTCGAATGAGGATGAAATCAAAGTCAATTTCCCAGTCGGGC
TGAAATTCCATGGTATTTTCCAACCGGTGACGGAATTTTTGCTAAATTGG
GGCTAGGGTTCCAGTGGGTCTGTGACACAGGGATATCTCCATGCATCTAA
AAAAATTCCCCGTTGATCCATTTTCTTCATTATCAAATATAAACAGAAAA
TTCAACTTATAGATCTAGTTTCTAGTTTGTCTGGCTTTTTTAAAATCACC
TTGCTTTGCATATTGACGCGTCGGCTCTTATGAAAAATGCAAATACTAAA
ATTAATCAAATTGGTTGATCCTCCTGAATGATTTCAATAAAAATTTCAAA
CACAGAAGCGACTTCATTTTATTTTTCATAAAATCTAAAATTTATTAAAG
ACGTTTCTGTGTCATCCGACCACCATCATCAGTTTAAAAACATTGAAATG
AAAATTTCTCTACTAAATACTAAGATTATATCGTCGCATCAAAATAAGAA
AGCCTTAAGTCCATTTTTGTAGTTTTGAGAAAATCAAGTTTAAAGGTTTG
AAATGGCTGCCATTTTTGACCATGTTGGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
GTCCTAAAGTCCAACTAAAATGACAATGGACTTAAGACTTTCTTAACTTG
AGAAAATTTCAAAAATAAAAATTCTTATTTTTCAAAAAACTTAAAATTAG
GTCACTTTAGGTTGGTTTTTGATGGATTTAAGCCAAAAATTCGATAAAAA
ATGGGGTGTAAAGCATCGGTATGGTCATAATTCAATTTTTGAAAAAATGG
ACTTAAGGCTTTCTTATTTTGATGCGACGATATTATTAAAGACAAGTCAT
ATATTTATTTTCATTTTTTCAGAACACAACCACCAGCCAACCTTCCGTTC
GGTGTAAATCACGAATTGAGTGACAACTATTACGTGCAAAGAGACGGGCG
TAGGGCGCATGCACCACCTACTGTTGTCAAGCCTACAGTGAAACAGATTG
GGGCTGGTGGAGCTGTAGCCGCTGGAGAGTAAGTAAATACTTTTTTTAAA
AAGATTAACTTCCATAAAATACAAGATTTTAGGTTCGAGATTGTACCAGA
GTTTTTTAAGTTGACAAAGTTTCCGCCATTAGGGAAATACACGTTTGATT
TATGTAAGGAGTTGGGGGGGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTACCGTCC
GCACATACCCATCATCCATTTTTGCCTAAGTCCCCCCCCCCCCGGGAGTT
GCCTCTACAAATTCGAACGTTTTCTTTCATAATGGTGGATTTATCTTGAG
TTATGCAAGTTTGGAACCTCAAAACCCCTATTTTTTACATAAATGAAAGG
TTAGGAACAGTCAATCTTCTACACGGCAACTGTCGCAAAAATATTAAATG
GCTTTCTACATTTTGGAATAGTAAAGTTTGAGATTGTTTTCAAATAAATT
TCTAATATTAAAGATATGTAATATAATTATCTTTCCTCAATTGTTTCTTT
CTAGATTTAAACCCTTGACTCCAGGAGATGTTTGCGATTGCTCGTGAAGA
ATAACCTTTGTAATTATTTTATCCCTATTTTTTGAGAATTGTAAGAAAGA
TTGATATAATTTGACATAATTTGTTATCGCATTTTTTTTTTCAATCTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047576-exon-scaffold_132-1575043694:95883..96007 | TCONS_00047576-exon-scaffold_132-1575043694:95883..96007 | Clytia hemisphaerica | exon |
| TCONS_00047576-exon-scaffold_132-1575043694:93120..93166 | TCONS_00047576-exon-scaffold_132-1575043694:93120..93166 | Clytia hemisphaerica | exon |
| TCONS_00047576-exon-scaffold_132-1575043694:90380..90535 | TCONS_00047576-exon-scaffold_132-1575043694:90380..90535 | Clytia hemisphaerica | exon |
| TCONS_00047576-exon-scaffold_132-1575043694:88008..88153 | TCONS_00047576-exon-scaffold_132-1575043694:88008..88153 | Clytia hemisphaerica | exon |
| TCONS_00047576-exon-scaffold_132-1510915933:95883..96007 | TCONS_00047576-exon-scaffold_132-1510915933:95883..96007 | Clytia hemisphaerica | exon |
| TCONS_00047576-exon-scaffold_132-1510915933:93120..93166 | TCONS_00047576-exon-scaffold_132-1510915933:93120..93166 | Clytia hemisphaerica | exon |
| TCONS_00047576-exon-scaffold_132-1510915933:90380..90535 | TCONS_00047576-exon-scaffold_132-1510915933:90380..90535 | Clytia hemisphaerica | exon |
| TCONS_00047576-exon-scaffold_132-1510915933:88008..88153 | TCONS_00047576-exon-scaffold_132-1510915933:88008..88153 | Clytia hemisphaerica | exon |
| TCONS_00047576-exon-scaffold_132-1491911889:95883..96007 | TCONS_00047576-exon-scaffold_132-1491911889:95883..96007 | Clytia hemisphaerica | exon |
| TCONS_00047576-exon-scaffold_132-1491911889:93120..93166 | TCONS_00047576-exon-scaffold_132-1491911889:93120..93166 | Clytia hemisphaerica | exon |
| TCONS_00047576-exon-scaffold_132-1491911889:90380..90535 | TCONS_00047576-exon-scaffold_132-1491911889:90380..90535 | Clytia hemisphaerica | exon |
| TCONS_00047576-exon-scaffold_132-1491911889:88008..88153 | TCONS_00047576-exon-scaffold_132-1491911889:88008..88153 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_132 | supercontig | scaffold_132:88008..96007 - |
Blast
BLAST of TCONS_00047576 vs. Swiss-Prot (Human)
Match: NDUA7 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 OS=Homo sapiens GN=NDUFA7 PE=1 SV=3) HSP 1 Score: 76.2554 bits (186), Expect = 5.929e-18 Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query: 75 MASATRAVQKLRSALAGAEY--NIAVRY-SVSQQPRTQPPANLPFGVNHELSDNYYVQRDGRRAHAPPTVVKPTVKQIGAG-----GAVAAGEFKPLTPG 350
MASATR +Q+LR+ +G + + +RY +S+ RTQPP LP G +H+LS+NYY RDGRR PP+++ + K + +G AVAA E K +TP
Sbjct: 1 MASATRLIQRLRNWASGHDLQGKLQLRYQEISK--RTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPSIIMSSQKALVSGKPAESSAVAATEKKAVTPA 98
The following BLAST results are available for this feature:
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