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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047592 ID=TCONS_00047592|Name=TCONS_00047592|organism=Clytia hemisphaerica|type=transcript|length=482bp
AGGACCACGTAAAGACGTGTGGGTCATTTCCAGTCAAATGTACCAACACA
GGATGTGACAAGTCATTTGAGAGGAGCGACAAAGAATTGATGGATAAACA
TATTCGAGATGATTGTCTGTTTCAAGAAATCAAGTGCAAGTTATACACTG
TTGGTTGTCGAACAAAATTTCTCCGGGGAAACAGAGAAGATCACAACAAG
GAAGAAATGCAGTACCATTTAACACTACTAATGCAAGATTACACTGTAAT
GAAGAAAAGAGTTGAATTCTCTGAAGGGAAGCAAAAAATTTTAGAAGAAA
TTATTTCAAACCAACACGAAAAGATTGTTTCATTGACACAAGAAGTCGAA
ATGCTGTCAAAGTCATCTGAAGCTCAAGGAATTGGTGAAAATGATTCCAC
AAGCAGTGAAATTGTTCATTTGAAACAAAATGAAGTTGTGCAAGAAAACC
AACCAATTCCTTTCTCATGCaggatatttttt Run BLAST on NCBI protein sequence of TCONS_00047592-protein >TCONS_00047592-protein ID=TCONS_00047592-protein|Name=TCONS_00047592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
DHVKTCGSFPVKCTNTGCDKSFERSDKELMDKHIRDDCLFQEIKCKLYTV
GCRTKFLRGNREDHNKEEMQYHLTLLMQDYTVMKKRVEFSEGKQKILEEI
ISNQHEKIVSLTQEVEMLSKSSEAQGIGENDSTSSEIVHLKQNEVVQENQ
PIPFSCRIFF Run BLAST on NCBI transcript from alignment at scaffold_132:155504..158043- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047592 ID=TCONS_00047592|Name=TCONS_00047592|organism=Clytia hemisphaerica|type=transcript|length=2540bp|location=Sequence derived from alignment at scaffold_132:155504..158043- (Clytia hemisphaerica)
AGGACCACGTAAAGACGTGTGGGTCATTTCCAGTCAAATGTACCAACACA
GGATGTGACAAGTCATTTGAGAGGAGCGACAAAGAATTGGTAAATATTTT
AGTGCATAATACCTTAACCCTAGCCAGTTTCTTTTTTTGGTTTGTAAAAT
ACCAATCAAACTAGTGGCCGTTAATTCATATCTACTACTGACCAGAATTT
TTAAGTTTATAGCACTTATTTATCTTGAGTTTTTAAGGAAAGCCTCGATA
ACTGCTTCTCCAAAGATGAGGTCCCTGATAAAAAGGGTAGCCCAGAAACT
GGCAACGAAAGATAAATATTGCCAGGGAAATCTCAAGAAAGCAATTATTT
TACGTGAATGACAATACCAAGTTTAAAGGTTTTGTTTAAAAAAAAGAGTG
ATATCGTTTGCTTACTCATCAATCTTAAATCACAAGCTTTTTAACATTGG
ATAAAAACGGATGTGGAGCAAGATTGGTCAGAAAGAGGAAAGAAAACATT
TTTTTGCTTATATCAGCATAATATAACAATAGGCAGACACTGTCCTGATA
TGAAATGTATAACAGTAATTACTAAACTTTTAATTATGGAAATGTCACTT
AAATTGAATCGAAATAATAGACAGACTTTATGTTATGATTCTCTATCATT
GACTCTTTTTACAAAGCATTGATGTGAAATATCAACTTTGAACTTCATCC
AAGATCTTGGATGGTCGTCATGGTTACTTTTGTCTTGATTGCGCGCTGAA
TAGAATCTCGATTCGTCGGCACAGCGTCAATATATGATTTTGACCTGTGC
TATTCACGGTATACATAAGTATACGGTATACTATTATACCATATTTTTGG
TGATCAAAGAGAAACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAGGATTAAATCAGGGCATG
ATCTGACTGTTTTCGCACTTTCAGTTGCTCTATTGAATTTATCCAATTGG
CTTGAAATTTTGCAAGTGTGCACCAAATATAAATTGGCATCTTTGTGAAA
ATTTTGGCATTATTGATTACGTCATTGCTATCTGATGACGTCATCCTTCT
TTGAAAATGCCAAAAATAGGACCTGCTCTAACTTTTTCACTTTGATTTTT
TTGCTCAAGTTTTGTGAGGCAACTCCACTTGACATGTATTTTGATAGCTG
TGCAACTTTATCACTCTTTTTAGATGGATAAACATATTCGAGATGATTGT
CTGTTTCAAGAAATCAAGTGCAAGTTATACACTGTTGGTTGTCGAACAAA
AGTAGGTTGATTTTTTAGACCGAGAGTTCCGGCTTGATAGAACTTTTCAT
AAATTACGTCACGAACATCAGATGCCTTGTATCCAAATAATTACCATGGT
GATTATGTCCCTTGAGACATTAAATGATCTTTCTATGAAAAGAAAGCAGT
TTAAAGGAGTTAATCACCATGGCAATAATTTCAAAACGAGGCAAGTGATG
TTCGTGAAGTAATTTATGAAAAGGTCTATTAAGTCTGACATTGAGTTAAG
GTACTCAGACCCAATGTTCTATACGTAATATTCTTAATATTCGTTCGTTC
GTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGT
TCGTTCGTTCGTTCGTTCGTTCGTTCGTGCGTTCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTCGCTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCG
TTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTT
CGTTCAAGAGCATGAAATTTTGGTGTTTAAACGTTTTTTTATAAGAAACA
AACGACTATTTTGATCGATCGTTTCGATAGATTGTTTAATGGTCACGCTC
ACGTAGATATCAATTATATAAGTGTTAAATGCATAACCAGGTAGGTCTAT
AAAAGTATCACTTGTTTATTTTCAGTTTCTCCGGGGAAACAGAGAAGATC
ACAACAAGGAAGAAATGCAGTACCATTTAACACTACTAATGCAAGATTAC
ACTGTAATGAAGAAAAGAGTTGAATTCTCTGAAGGGAAGCAAAAAATTTT
AGAAGAAATTATTTCAAACCAACACGAAAAGATTGTTTCATTGACACAAG
AAGTCGAAATGCTGTCAAAGTCATCTGAAGCTCAAGGAATTGGTGAAAAT
GATTCCACAAGCAGTGAAATTGTTCATTTGAAACAAAATGAAGTTGTGCA
AGAAAACCAACCAATTCCTTTCTCATGCAGGATATTTTTT Coding sequence (CDS) from alignment at scaffold_132:155504..158043- >TCONS_00047592 ID=TCONS_00047592|Name=TCONS_00047592|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_132:155504..158043- (Clytia hemisphaerica)
TTTCTCCGGGGAAACAGAGAAGATCACAACAAGGAAGAAATGCAGTACCA
TTTAACACTACTAATGCAAGATTACACTGTAATGAAGAAAAGAGTTGAAT
TCTCTGAAGGGAAGCAAAAAATTTTAGAAGAAATTATTTCAAACCAACAC
GAAAAGATTGTTTCATTGACACAAGAAGTCGAAATGCTGTCAAAGTCATC
TGAAGCTCAAGGAATTGGTGAAAATGATTCCACAAGCAGTGAAATTGTTC
ATTTGAAACAAAATGAAGTTGTGCAAGAAAACCAACCAATTCCTTTCTCA
TGCAGGATATTTTTTATGGATAAACATATTCGAGATGATTGTCTGTTTCA
AGAAATCAAGTGCAAGTTATACACTGTTGGTTGTCGAACAAAAGACCACG
TAAAGACGTGTGGGTCATTTCCAGTCAAATGTACCAACACAGGATGTGAC
AAGTCATTTGAGAGGAGCGACAAAGAATTGTTTCTCCGGGGAAACAGAGA
AGATCACAACAAGGAAGAAATGCAGTACCATTTAACACTACTAATGCAAG
ATTACACTGTAATGAAGAAAAGAGTTGAATTCTCTGAAGGGAAGCAAAAA
ATTTTAGAAGAAATTATTTCAAACCAACACGAAAAGATTGTTTCATTGAC
ACAAGAAGTCGAAATGCTGTCAAAGTCATCTGAAGCTCAAGGAATTGGTG
AAAATGATTCCACAAGCAGTGAAATTGTTCATTTGAAACAAAATGAAGTT
GTGCAAGAAAACCAACCAATTCCTTTCTCATGCAGGATATTTTTTATGGA
TAAACATATTCGAGATGATTGTCTGTTTCAAGAAATCAAGTGCAAGTTAT
ACACTGTTGGTTGTCGAACAAAAGACCACGTAAAGACGTGTGGGTCATTT
CCAGTCAAATGTACCAACACAGGATGTGACAAGTCATTTGAGAGGAGCGA
CAAAGAATTGTTTCTCCGGGGAAACAGAGAAGATCACAACAAGGAAGAAA
TGCAGTACCATTTAACACTACTAATGCAAGATTACACTGTAATGAAGAAA
AGAGTTGAATTCTCTGAAGGGAAGCAAAAAATTTTAGAAGAAATTATTTC
AAACCAACACGAAAAGATTGTTTCATTGACACAAGAAGTCGAAATGCTGT
CAAAGTCATCTGAAGCTCAAGGAATTGGTGAAAATGATTCCACAAGCAGT
GAAATTGTTCATTTGAAACAAAATGAAGTTGTGCAAGAAAACCAACCAAT
TCCTTTCTCATGCAGGATATTTTTTATGGATAAACATATTCGAGATGATT
GTCTGTTTCAAGAAATCAAGTGCAAGTTATACACTGTTGGTTGTCGAACA
AAAGACCACGTAAAGACGTGTGGGTCATTTCCAGTCAAATGTACCAACAC
AGGATGTGACAAGTCATTTGAGAGGAGCGACAAAGAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047592-exon-scaffold_132-1575043694:157955..158043 | TCONS_00047592-exon-scaffold_132-1575043694:157955..158043 | Clytia hemisphaerica | exon |
| TCONS_00047592-exon-scaffold_132-1575043694:156593..156670 | TCONS_00047592-exon-scaffold_132-1575043694:156593..156670 | Clytia hemisphaerica | exon |
| TCONS_00047592-exon-scaffold_132-1575043694:155504..155818 | TCONS_00047592-exon-scaffold_132-1575043694:155504..155818 | Clytia hemisphaerica | exon |
| TCONS_00047592-exon-scaffold_132-1510915933:157955..158043 | TCONS_00047592-exon-scaffold_132-1510915933:157955..158043 | Clytia hemisphaerica | exon |
| TCONS_00047592-exon-scaffold_132-1510915933:156593..156670 | TCONS_00047592-exon-scaffold_132-1510915933:156593..156670 | Clytia hemisphaerica | exon |
| TCONS_00047592-exon-scaffold_132-1510915933:155504..155818 | TCONS_00047592-exon-scaffold_132-1510915933:155504..155818 | Clytia hemisphaerica | exon |
| TCONS_00047592-exon-scaffold_132-1491911889:157955..158043 | TCONS_00047592-exon-scaffold_132-1491911889:157955..158043 | Clytia hemisphaerica | exon |
| TCONS_00047592-exon-scaffold_132-1491911889:156593..156670 | TCONS_00047592-exon-scaffold_132-1491911889:156593..156670 | Clytia hemisphaerica | exon |
| TCONS_00047592-exon-scaffold_132-1491911889:155504..155818 | TCONS_00047592-exon-scaffold_132-1491911889:155504..155818 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_132 | supercontig | scaffold_132:155504..158043 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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