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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047630 ID=TCONS_00047630|Name=TCONS_00047630|organism=Clytia hemisphaerica|type=transcript|length=2379bpRun BLAST on NCBI protein sequence of TCONS_00047630-protein >TCONS_00047630-protein ID=TCONS_00047630-protein|Name=TCONS_00047630-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp MGKTIRHRDENDGDSSDESDIIKLINRKSSTIKKKKKKKLKKKRRVKTVRRun BLAST on NCBI transcript from alignment at scaffold_133:164895..210807+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047630 ID=TCONS_00047630|Name=TCONS_00047630|organism=Clytia hemisphaerica|type=transcript|length=45913bp|location=Sequence derived from alignment at scaffold_133:164895..210807+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_133:164895..210807+ >TCONS_00047630 ID=TCONS_00047630|Name=TCONS_00047630|organism=Clytia hemisphaerica|type=CDS|length=12852bp|location=Sequence derived from alignment at scaffold_133:164895..210807+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047630 vs. Swiss-Prot (Human)
Match: RBPMS (RNA-binding protein with multiple splicing OS=Homo sapiens GN=RBPMS PE=1 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 4.894e-28 Identity = 75/188 (39.89%), Postives = 102/188 (54.26%), Query Frame = 2
Query: 560 FVSGLPMDTKPREIYLMFRGFKGYQSSLLKLTGKEGKKATPVAFVTFETREQAETTKSELQGVRFDPELATTIRIEFAKANTKVSNPVLKPATATSMVLPGIPSPTFPA-NAFDLAAAGLFAHADPTNWPTSTANFTDLNGNHLTALPQQHLHPG-LTTAVPHSAFDRLATLSCSLPLTAPVSIANQG 1117
FVSGLP+D KPRE+YL+FR FKGY+ SL+KLT K+ PV FV+F++R +AE K+ L G+RFDPE+ T+R+EFAKANTK++ L S LP P F A ++L L+ + P W A + L+P L A+P AF A+L + P +QG
Sbjct: 27 FVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQ-----PVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNT-VPQFIAREPYELTVPALYP-SSPEVW----APYP--------------LYPAELAPALPPPAFTYPASLHAQMRWLPPSEATSQG 189 The following BLAST results are available for this feature:
BLAST of TCONS_00047630 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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