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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047637 ID=TCONS_00047637|Name=TCONS_00047637|organism=Clytia hemisphaerica|type=transcript|length=505bp
GTAAAACTAAACTATCTAGTAACCCCCGTCTTTACACGAAGTAAGAAAAT
AGAATTTGCAAAATGGTAGCAGAGTGGCGCGAAACTATTTTTTTCTGGTT
GGTATCGAAGTACAAACTTTGCAATagttaaagctatttcaaagtAAATC
TTAACCTAACATCATGATCCTTGCCACAAATCACTGATTAACTGTATGAA
ACGCTTTTGCAGTTATTCTGGAAGAAACTGGGGAGGATATTTTTGTGGTT
CTTTGAGCAAAAATGGACTAATCTTTTAACAACTCAACTCATCATGACAT
TTTGGTGGATCACAACTGAATAAAATGAAACACTGTCAAGAAGAACACTG
AAAACATCAAACTTCAAAACTGAAAAGCATGAGCAGCTATAAAGAATTGA
CCTGGACATGAATTCAAAGCTCCAAGaattcaaaatgcagaaattggtat
ggtttttattgaatatttgaaTTTGAGAGTTTAATTGAATTGACTGCACT
AATTT Run BLAST on NCBI transcript from alignment at scaffold_133:275633..280631+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047637 ID=TCONS_00047637|Name=TCONS_00047637|organism=Clytia hemisphaerica|type=transcript|length=4999bp|location=Sequence derived from alignment at scaffold_133:275633..280631+ (Clytia hemisphaerica)
GTAAAACTAAACTATCTAGTAACCCCCGTCTTTACACGAAGTAAGAAAAT
AGAATTTGCAAAATGGTAGCAGAGTGGCGCGAAACTATTTTTTTCTGGTT
GGTATCGAAGTACAAACTTTGCAATagttaaagctatttcaaagtAAATC
TTAACCTAACATCATGATCCTTGCCACAAATCACTGATTAACTGTATGAA
ACGCTTTTGCAGTTATTCTGGAAGAAACTGGGGAGGATATTTTTGTGGTT
CTTTGAGCAAAAATGGACTAATCTTTTAACAACTCAACTCATCATGACAT
TTTGGTGGATCACAACTGAATAAAATGAAACACTGTCAAGAAGAACACTG
AAAACATCAAACTTCAAAACTGAAAAGCATGAGCAGGtatgtttttttaa
cttttcagttCTATACCAGACTCTCCCACTCTATACAATCGATAACTTTT
TCCCAACCATTGATGACCAATCAAtaactgattgattgattggatATCAA
CTGATGGTGATGGGGAATCAAGCCTTTTCTATAAATAATttgctacacgc
tttttttttataaaaatacactttataagaatgtccatgatgaaaatgac
caaaaaattaaaaatatgctaagaatatcaccatcatggaattttgagac
gtatgtactaaatgttaaatctagtctgaattaggatcctaacctaagaa
tgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGTATATCTTTTTTTACCAATGTTTTGTTCAATGGA
TAGGCAACCAAACCTCacttctcaaaaattaaaaaagattatCAAGTAAA
GTTAATAAtcagggaaattttttttcgatttttcagatGACACCCGCACA
AAAATAAGTCTGAATGGAAATCTGAAAAGGCGGCCGTCCACATAGAACGT
ACGCACTAAGAGGGAGggggatcttctcaaaagctTGTGCTTTTGACAGG
GGGAGGGGTCAAATGGAAATGTTACATACTCGGGTAACCTAATGCATGtc
ccaatttcttcaaaaactaCTTATATTTATACatttctttttgtatttat
ggCGTCATAATTAGGTTTTCTTAACCCCATTCAACCTATGCTTTTAgagg
cggttcagaactaggggaaAACTACATACTTACTAGATagagggggtata
gccatttgtgtacgcttgcgtacagggggagggggtacttgaTTTTCAAC
ATCTTAGTGTGTACGTACTACGGGGACGGCCCCAANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNATATTCCAAAAATCCTGTGTCAGACTTTCTGAAACACTGAGTT
GAGCtatgaattgaaaatgttttcaaaaatatttttcagagggtctgaat
cctaaaaaattgatttttgagattttaagtcAGGAAACCAGTTTTTAAAA
AACCTAATTAATTCATTGCATGCCAAACAACaatttccctgaaaatttca
agtcaaagtCTTTATCTGATCCTGAGATATTCCTGACAAGGTACATGCAA
ACCTGAGAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTGCAAACCTGAGAAAAATGTGGCTGCGTGTTAA
AAGGCTGAACGGTGCGATACAACGCAAACGAAATACAAACTAAAAGGTCC
TCTTCAGCCACagtacaaaaataaacaaaaacgtgTTGCGCTTAAGTCAG
taaacaaagcaaatttttttgtgaccttGCGAAAACATAAAATTTGAGTA
AAAACTGCCACAAAACTGTGACAAATTGTTCATTGATAGTCCGGAATGAC
TCTGTAGCCATAAAAACCTTTCTGGTGCATATTTTCATTCATATatagac
ttgaattgacaatgagcTGACTTGACCTAAGGTGGTTATGAGCAGGGGGG
GTACaaaggcagggtactaacccatagccgggtggtggtgtctatttttg
catttcaaaaaagttagtacccggtactactttacgggtgggggtgtgta
tttttcactctttTAGCAAGTACAGGgtactatttgggtactttttcaca
gagttttgctcctttttcaataaaaaaagtagtcttttgtaatattttga
cttttttcaaatattattttcttgatttgaaattttttttaattgagaaa
cttttttttactcttttgagaatttttttgatttttgtgaagacAAAACT
TCCGAAATGGTCAAGAAATGTGTTAttaaaatcaaaggacaaaagccTCT
GACTTAATCAATGATAGTTTGTTTGAATTATCTGTCCAtttcagtcagaa
aaactaACACCCTCTCTTttggtctaatctgtaaaatataagattttagg
gggtggtgtctctattttttacagcaaaaatgaagtagtacccggtacta
aatatgggtgggtggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAACCAAAATCAATAATCAATGGATGATT
GATGACAAATCGATAACAATTAATGAAAAATCAATTACCATCGATACACT
GGAAGTTAATTGATAATGATCGATTCTTAATCGTCAGAACCAATTCCAAA
AGGTAGTCGATAGTAATTGATACCTCATCAATAACAATTGATTTTGCATC
AGTATCCTGTATTATTGATTCTGATATTTATGATCAATTAAATCATTCAT
GACTTCCTCAAATTGTTTATCTGAGACTTATTCATTACTGGTTCATCTGA
AACCCTTCACAAAGGGGTGAAATACTTTAAAAGATATATTaaataactaa
aaataattGTTAACGTTAAATCACACATAGAATATAATTAAAATGCTGAT
ACTGCTGTCTGGCTGTATTCGGAGACTTAAGGTATTTTATGTGTTTTTGG
ATAACTTTGGGAAGGCTTGgtacttttttaaatcaaatgatCCAAAAGAT
TCATATGTCTAAAAAACGAGGGGGTTTGGATACAAGATTNATCATTAAAT
GAATCGATACGGCTACACATTTTAGCCACATTAAAAACTAAAGTTCCTTC
CCAATAAAGTTAGCCGGTATCTTTTGACGTAGTGGTCACGATTGTCTTTT
TGACATCAATAATAAGGTTTTAAATGAGTCAAGCAGAAAGTAACACTTTT
GCATTGCACTTAACACTTCTTTGGAGATGAAACCTTTTTGTTCTAGTTAG
GGGATGAAAAGAGTATGTCATACTTTTCATAAAGTAGTGATCTTTAGGTT
TGTACATGTAATGAATACCTTTACTTTCAATCGAagttgttgaaaagata
tgagGCACTGTTTGCAAAATATACTATTTAAGATGTACACACAGTAATAT
ATCTTCATCTGatatatctttttatttcagCTATAAAGAATTGACCTGGA
CATGAATTCAAAGCTCCAAGaattcaaaatgcagaaattggtatggtttt
tattgaatatttgaaTTTGAGAGTTTAATTGAATTGACTGCACTAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047637-exon-scaffold_133-1491911889:275633..276018 | TCONS_00047637-exon-scaffold_133-1491911889:275633..276018 | Clytia hemisphaerica | exon |
| TCONS_00047637-exon-scaffold_133-1510915933:275633..276018 | TCONS_00047637-exon-scaffold_133-1510915933:275633..276018 | Clytia hemisphaerica | exon |
| TCONS_00047637-exon-scaffold_133-1575043694:275633..276018 | TCONS_00047637-exon-scaffold_133-1575043694:275633..276018 | Clytia hemisphaerica | exon |
| TCONS_00047637-exon-scaffold_133-1491911889:280513..280631 | TCONS_00047637-exon-scaffold_133-1491911889:280513..280631 | Clytia hemisphaerica | exon |
| TCONS_00047637-exon-scaffold_133-1510915933:280513..280631 | TCONS_00047637-exon-scaffold_133-1510915933:280513..280631 | Clytia hemisphaerica | exon |
| TCONS_00047637-exon-scaffold_133-1575043694:280513..280631 | TCONS_00047637-exon-scaffold_133-1575043694:280513..280631 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_133 | supercontig | scaffold_133:275633..280631 + |
Blast
The following BLAST results are available for this feature:
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