TCONS_00047638 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047638
Unique NameTCONS_00047638
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1893

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047638 ID=TCONS_00047638|Name=TCONS_00047638|organism=Clytia hemisphaerica|type=transcript|length=1893bp
tagtTAACAAGTTcttaagatattaaatttttgtttgttttatgaCGTTA
TCACAAATGACctgaaaaacaggtttttagccaaaatctcaaaaaaggcA
AAAGTTAAATTTAAGTAATATCatcacttttcattttcttcattgCAATA
CACCTCTTTTGATGGAATTTAGACATGTACTAATTTACCTGAGGGCGTCG
CAAGGGAAGATTCACAGCATAGGCGTAGCGATATACCccgcaaaatttat
ggatgagagcggtttttacgacactttaattattgtctttgttttatcaa
aagataatgaatttgtcataaacgtctgcactccctcataaattttgcag
ggtatctcgcttcgCCTATGCACAGCGTTTTCACATTCATGCTCAAGAGA
ATATTAGCATGCCAATTCGAACAAACTTATTTATAGGAAATATCTAATTT
CCTGAAAGTTTTACTTGCATCCACTGAAGTGTGGAGTACTTAGTTATATA
ATATACTGTCCTATTTGCCCAAAGGAGTATCATTATTTGCTGATACTAAC
CTTGGATTGGTGAACATgaagaaatggaagaaaacTGACAATTTCCTACC
TGAAACTTCTGCAATGCTTTATTTTGAACAATCAATGAAAGCACCAAATA
TTTTGTTACCCATTCACTgcaatataaaatcaaaatcaaaagggTGTGTT
ATGTTGGGTGTATTTTTGAATATAAGATaacttaactttttgggaataTA
TAATAATTGTCTGAAATATGGTATGAGCTAACATGCGTATGTATTTTTAT
CAACATGAAAACATAGGGTTTCTTCTTGACTGACCTTAAGGTAATGTTTT
CAGCATTATTTTCTCCTGGATAGAGACTGTGGATCACTTGCAAGTAACAA
GGAGAACTTATCCATGGATCTGAACCTGACTCTGGTACCCCTCAGGTTTG
GGTGTCTCCATTTCACCTGTTGTTTTGTTCCCTACTACTACTTATgcaat
tttcttttattgtttatgTTTTAGTGTTATGTCACTTGCCCCTTTAGTGT
GAGTTTAAGGCTCTTGTATTTGATTTGGTCCatgattttaatttattttt
tttgataacaaGAAAACTGACAACAAAAAATGGAACAACCAACTGATGCT
GAAAGGAGGGATTTGTTACCAGTTTCTTTGCTCTGTGGCTTTTTGGGAGC
AGGTAAAACAACCCTCATTAAGCATATCTTGGAATCTAAACATGCAGAAG
AAGGTTTTAAATGTGCTGTTATTGTCAATGATATGGCTGCCCTAAATATT
GACAAAAGTTTGATTGATCAGTCAGCCCTAGTTCAAAGTGATGAAGTCAT
TGCAATGCAAAATGGTTGCTTTTGTTGTACTCTCCAAAGTGATCTTGTGG
ATCAGATTGTGTCTTTGGCATCAAAGAATATATTTAATTACATGTTGATT
GAAGCATCAGGAGTTTCGGAACCTGCACAAATCGCTCCACTTTTTGATCT
TTGCGAAGATGAGCATGACCACGAAAAGGAACATCCAGAAGGACCAGAGC
TGGGTGAAGTTGCAAGGCTTGATACATGTGTTACTGTTATTGATGCAGCT
GAATTTTACAATAATCTTGAAAGCATGAAAATGTATGAGGAAGGTGAAAT
GACAGGAACTATATCAGAGTTGTTGATGGAACAAGTGGAATATTCCAATG
TTGTTATTCTCAATAAACAAGATTTGGTCAGCCAACAACAGCAAGGTGAC
ATTCTTGACAGGATCTCTCTGTTGAATCCAAAGGCTAAAGTCTTGACATC
CTTTCAAAGTAAAATTGACGTCAGAGAAATTCTAAACACCAATTTGTATA
ATAAAGCTGATATGGACGAAGATTCAATTATGTGTGCAGGTAT
Run BLAST on NCBI

protein sequence of TCONS_00047638-protein

>TCONS_00047638-protein ID=TCONS_00047638-protein|Name=TCONS_00047638-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
MEQPTDAERRDLLPVSLLCGFLGAGKTTLIKHILESKHAEEGFKCAVIVN
DMAALNIDKSLIDQSALVQSDEVIAMQNGCFCCTLQSDLVDQIVSLASKN
IFNYMLIEASGVSEPAQIAPLFDLCEDEHDHEKEHPEGPELGEVARLDTC
VTVIDAAEFYNNLESMKMYEEGEMTGTISELLMEQVEYSNVVILNKQDLV
SQQQQGDILDRISLLNPKAKVLTSFQSKIDVREILNTNLYNKADMDEDSI
MCAG
Run BLAST on NCBI

transcript from alignment at scaffold_133:301260..303632+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047638 ID=TCONS_00047638|Name=TCONS_00047638|organism=Clytia hemisphaerica|type=transcript|length=2373bp|location=Sequence derived from alignment at scaffold_133:301260..303632+ (Clytia hemisphaerica)
tagtTAACAAGTTcttaagatattaaatttttgtttgttttatgaCGTTA
TCACAAATGACctgaaaaacaggtttttagccaaaatctcaaaaaaggcA
AAAGTTAAATTTAAGTAATATCatcacttttcattttcttcattgCAATA
CACCTCTTTTGATGGAATTTAGACATGTACTAATTTACCTGAGGGCGTCG
CAAGGGAAGATTCACAGCATAGGCGTAGCGATATACCccgcaaaatttat
ggatgagagcggtttttacgacactttaattattgtctttgttttatcaa
aagataatgaatttgtcataaacgtctgcactccctcataaattttgcag
ggtatctcgcttcgCCTATGCACAGCGTTTTCACATTCATGCTCAAGAGA
ATATTAGCATGCCAATTCGAACAAACTTATTTATAGGAAATATCTAATTT
CCTGAAAGTTTTACTTGCATCCACTGAAGTGTGGAGTACTTAGTTATATA
ATATACTGTCCTATTTGCCCAAAGGAGTATCATTATTTGCTGATACTAAC
CTTGGATTGGTGAACATgaagaaatggaagaaaacTGACAATTTCCTACC
TGAAACTTCTGCAATGCTTTATTTTGAACAATCAATGAAAGCACCAAATA
TTTTGTTACCCATTCACTgcaatataaaatcaaaatcaaaagggTGTGTT
ATGTTGGGTGTATTTTTGAATATAAGATaacttaactttttgggaataTA
TAATAATTGTCTGAAATATGGTATGAGCTAACATGCGTATGTATTTTTAT
CAACATGAAAACATAGGGTTTCTTCTTGACTGACCTTAAGGTAATGTTTT
CAGCATTATTTTCTCCTGGATAGAGACTGTGGATCACTTGCAAGTAACAA
GGAGAACTTATCCATGGATCTGAACCTGACTCTGGTACCCCTCAGGTTTG
GGTGTCTCCATTTCACCTGTTGTTTTGTTCCCTACTACTACTTATgcaat
tttcttttattgtttatgTTTTAGTGTTATGTCACTTGCCCCTTTAGTGT
GAGTTTAAGGCTCTTGTATTTGATTTGGTCCatgattttaatttattttt
tttgataacaaGAAAACTGACAACAAAAAATGGAACAACCAACTGATGCT
GAAAGGAGGGTAAGCGAGCTTGCATGTATCAATTTGTTATTTGTATAGTT
TATTATACAAAGCTGGACAACATAAAAATGGAGGTGTGCACTTCAGGGCA
ATCAccacttttcttatttttatgtCTTGCTGAATGcgttaatatttttt
gtttaagtatCAACTTCTAAACTNTCAGGGCAACCAccgtttttcttgtt
tttatgtCCTGCTGAATGCGTTAAATATTGTTTAAGTATCAACTTCTAAA
CGAAAGATACAGTTTGTAATAAATTGTAACTTATGTTCATAGGATTTGTT
ACCAGTTTCTTTGCTCTGTGGCTTTTTGGGAGCAGGTAAAACAACCCTCA
TTAAGCATATCTTGGAATCTAAACATGCAGAAGAAGGTTTTAAATGTGCT
GTTATTGTCAATGATATGGCTGCCCTAAATATTGACAAAAGTTTGATTGA
TCAGTCAGCCCTAGTTCAAAGTGATGAAGTCATTGCAATGCAAAATGGTT
GCTTTTGTTGTACTCTCCAAAGTGATCTTGTGGATCAGATTGTGTCTTTG
GCATCAAAGAATATATTTAATTACATGTTGATTGAAGCATCAGGAGTTTC
GGAACCTGCACAAATCGCTCCACTTTTTGATCTTTGCGAAGATGAGCATG
ACCACGAAAAGGAACATCCAGAAGGACCAGAGCTGGGTGAAGTTGCAAGG
CTTGATACATGTGTTACTGTTATTGATGCAGCTGAATTTTACAATAATCT
TGAAAGCATGAAAATGTATGAGGAAGGTGAAATGACAGGTAACAGTCCAT
TGTTAAATGAAAGAATTATCAGACACcattttttgataattaaaagaATT
CCATTCTGGTGCTTCACTGACTTTTATAATTTgataaattatataaaaaa
tcatttctcatttcaaatttgtaaattacCATCTACCATTTATCAATTGT
AATTCTCACTTTGAGAAATATCTCTTTAAATTCAGGAACTATATCAGAGT
TGTTGATGGAACAAGTGGAATATTCCAATGTTGTTATTCTCAATAAACAA
GATTTGGTCAGCCAACAACAGCAAGGTGACATTCTTGACAGGATCTCTCT
GTTGAATCCAAAGGCTAAAGTCTTGACATCCTTTCAAAGTAAAATTGACG
TCAGAGAAATTCTAAACACCAATTTGTATAATAAAGCTGATATGGACGAA
GATTCAATTATGTGTGCAGGTAT

Coding sequence (CDS) from alignment at scaffold_133:301260..303632+

>TCONS_00047638 ID=TCONS_00047638|Name=TCONS_00047638|organism=Clytia hemisphaerica|type=CDS|length=2286bp|location=Sequence derived from alignment at scaffold_133:301260..303632+ (Clytia hemisphaerica)
ATGGAACAACCAACTGATGCTGAAAGGAGGGATTTGTTACCAGTTTCTTT
GCTCTGTGGCTTTTTGGGAGCAGGTAAAACAACCCTCATTAAGCATATCT
TGGAATCTAAACATGCAGAAGAAGGTTTTAAATGTGCTGTTATTGTCAAT
GATATGGCTGCCCTAAATATTGACAAAAGTTTGATTGATCAGTCAGCCCT
AGTTCAAAGTGATGAAGTCATTGCAATGCAAAATGGTTGCTTTTGTTGTA
CTCTCCAAAGTGATCTTGTGGATCAGATTGTGTCTTTGGCATCAAAGAAT
ATATTTAATTACATGTTGATTGAAGCATCAGGAGTTTCGGAACCTGCACA
AATCGCTCCACTTTTTGATCTTTGCGAAGATGAGCATGACCACGAAAAGG
AACATCCAGAAGGACCAGAGCTGGGTGAAGTTGCAAGGCTTGATACATGT
GTTACTGTTATTGATGCAGCTGAATTTTACAATAATCTTGAAAGCATGAA
AATGTATGAGGAAGGTGAAATGACAGGAACTATATCAGAGTTGTTGATGG
AACAAGTGGAATATTCCAATGTTGTTATTCTCAATAAACAAGATTTGGTC
AGCCAACAACAGCAAGGTGACATTCTTGACAGGATCTCTCTGTTGAATCC
AAAGGCTAAAGTCTTGACATCCTTTCAAAGTAAAATTGACGTCAGAGAAA
TTCTAAACACCAATTTGTATAATAAAGCTGATATGGACGAAGATTCAATT
ATGTGTGCAGGTATGGAACAACCAACTGATGCTGAAAGGAGGGATTTGTT
ACCAGTTTCTTTGCTCTGTGGCTTTTTGGGAGCAGGTAAAACAACCCTCA
TTAAGCATATCTTGGAATCTAAACATGCAGAAGAAGGTTTTAAATGTGCT
GTTATTGTCAATGATATGGCTGCCCTAAATATTGACAAAAGTTTGATTGA
TCAGTCAGCCCTAGTTCAAAGTGATGAAGTCATTGCAATGCAAAATGGTT
GCTTTTGTTGTACTCTCCAAAGTGATCTTGTGGATCAGATTGTGTCTTTG
GCATCAAAGAATATATTTAATTACATGTTGATTGAAGCATCAGGAGTTTC
GGAACCTGCACAAATCGCTCCACTTTTTGATCTTTGCGAAGATGAGCATG
ACCACGAAAAGGAACATCCAGAAGGACCAGAGCTGGGTGAAGTTGCAAGG
CTTGATACATGTGTTACTGTTATTGATGCAGCTGAATTTTACAATAATCT
TGAAAGCATGAAAATGTATGAGGAAGGTGAAATGACAGGAACTATATCAG
AGTTGTTGATGGAACAAGTGGAATATTCCAATGTTGTTATTCTCAATAAA
CAAGATTTGGTCAGCCAACAACAGCAAGGTGACATTCTTGACAGGATCTC
TCTGTTGAATCCAAAGGCTAAAGTCTTGACATCCTTTCAAAGTAAAATTG
ACGTCAGAGAAATTCTAAACACCAATTTGTATAATAAAGCTGATATGGAC
GAAGATTCAATTATGTGTGCAGGTATGGAACAACCAACTGATGCTGAAAG
GAGGGATTTGTTACCAGTTTCTTTGCTCTGTGGCTTTTTGGGAGCAGGTA
AAACAACCCTCATTAAGCATATCTTGGAATCTAAACATGCAGAAGAAGGT
TTTAAATGTGCTGTTATTGTCAATGATATGGCTGCCCTAAATATTGACAA
AAGTTTGATTGATCAGTCAGCCCTAGTTCAAAGTGATGAAGTCATTGCAA
TGCAAAATGGTTGCTTTTGTTGTACTCTCCAAAGTGATCTTGTGGATCAG
ATTGTGTCTTTGGCATCAAAGAATATATTTAATTACATGTTGATTGAAGC
ATCAGGAGTTTCGGAACCTGCACAAATCGCTCCACTTTTTGATCTTTGCG
AAGATGAGCATGACCACGAAAAGGAACATCCAGAAGGACCAGAGCTGGGT
GAAGTTGCAAGGCTTGATACATGTGTTACTGTTATTGATGCAGCTGAATT
TTACAATAATCTTGAAAGCATGAAAATGTATGAGGAAGGTGAAATGACAG
GAACTATATCAGAGTTGTTGATGGAACAAGTGGAATATTCCAATGTTGTT
ATTCTCAATAAACAAGATTTGGTCAGCCAACAACAGCAAGGTGACATTCT
TGACAGGATCTCTCTGTTGAATCCAAAGGCTAAAGTCTTGACATCCTTTC
AAAGTAAAATTGACGTCAGAGAAATTCTAAACACCAATTTGTATAATAAA
GCTGATATGGACGAAGATTCAATTATGTGTGCAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030341XLOC_030341Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047638-proteinTCONS_00047638-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047638-exon-scaffold_133-1491911889:301260..302418TCONS_00047638-exon-scaffold_133-1491911889:301260..302418Clytia hemisphaericaexon
TCONS_00047638-exon-scaffold_133-1510915933:301260..302418TCONS_00047638-exon-scaffold_133-1510915933:301260..302418Clytia hemisphaericaexon
TCONS_00047638-exon-scaffold_133-1575043694:301260..302418TCONS_00047638-exon-scaffold_133-1575043694:301260..302418Clytia hemisphaericaexon
TCONS_00047638-exon-scaffold_133-1491911889:302702..303197TCONS_00047638-exon-scaffold_133-1491911889:302702..303197Clytia hemisphaericaexon
TCONS_00047638-exon-scaffold_133-1510915933:302702..303197TCONS_00047638-exon-scaffold_133-1510915933:302702..303197Clytia hemisphaericaexon
TCONS_00047638-exon-scaffold_133-1575043694:302702..303197TCONS_00047638-exon-scaffold_133-1575043694:302702..303197Clytia hemisphaericaexon
TCONS_00047638-exon-scaffold_133-1491911889:303395..303632TCONS_00047638-exon-scaffold_133-1491911889:303395..303632Clytia hemisphaericaexon
TCONS_00047638-exon-scaffold_133-1510915933:303395..303632TCONS_00047638-exon-scaffold_133-1510915933:303395..303632Clytia hemisphaericaexon
TCONS_00047638-exon-scaffold_133-1575043694:303395..303632TCONS_00047638-exon-scaffold_133-1575043694:303395..303632Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:301260..303632 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.0262	20.4197	8.12904	7.3457	9.19041	7.52307	7.67781	7.9129	5.86581	6.93073	9.45317	10.906	11.5401	10.5277	14.6916	19.5202	10.1972	14.9437	8.17672	9.70679	15.6246	14.0533	17.1464	17.4818	4.64912	5.0976	10.7415	10.9031	12.032	13.4354
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003495CobW/HypB/UreG_dom
IPR027417P-loop_NTPase
Blast
[Close]
BLAST of TCONS_00047638 vs. Swiss-Prot (Human)
Match: CBWD2 (COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.362e-21
Identity = 63/231 (27.27%), Postives = 125/231 (54.11%), Query Frame = 2 
Query: 1166 LPVSLLCGFLGAGKTTLIKHILESKHAEEGFKCAVIVNDMA-ALNIDKSLIDQSALVQSDEVIAMQNGCFCCTLQSDLVDQIVSL-ASKNIFNYMLIEASGVSEPAQIAPLFDLCXXXXXXXXXXXXXXXLGEVARLDTCVTVIDAAEFYNNLESMKMYEEGEMTGTISELLMEQVEYSNVVILNKQDLVSQQQQGDILDRISLLNPKAKVLTSFQSKIDVREILNTNLYN 1852
            +PV+++ G+LGAGKTTL+ +IL  +H++   + AVI+N+      ++KSL         +E + ++NGC CC+++ + +  I +L   K  F+Y+L+E +G+++P  +A +F                 ELG    LD  +T++D+         +K   E +  G I+E    QV  ++ +++NK DLV ++    +   I  +N   ++L + +S++D+  +L+ + ++
Sbjct:   42 IPVTIITGYLGAGKTTLLNYILTEQHSK---RVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETTGLADPGAVASMF-------------WVDAELGSDIYLDGIITIVDSK------YGLKHLAEEKPDGLINE-ATRQVALADAILINKTDLVPEEDVKKLRATIRSINGLGQILETQRSRVDLSNVLDLHAFD 249
The following BLAST results are available for this feature:
BLAST of TCONS_00047638 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CBWD22.362e-2127.27COBW domain-containing protein 2 OS=Homo sapiens G... [more]
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