TCONS_00047648 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047648
Unique NameTCONS_00047648
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2870

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047648 ID=TCONS_00047648|Name=TCONS_00047648|organism=Clytia hemisphaerica|type=transcript|length=2870bp
CAGAAAACAACACACACGTAAAAACATGAATATTTAATATATGTTATAAG
AAATGGGTTTGGAAGCTGGCcggaaaaacacgaaaaatgcaTTGAAAGGC
AACGTGTCAAAACAAGAAAAGaagcaGCCGGATCCAAAAGATCTTCTACC
CGTTTCATTGCTCTGTGGCTTTCTGGGAGCGGGTAAAACAACCCTCCTTA
AGCACATCTTGGAGACCAAACACAATGAAGAGGGCTTTAGATGTGCTGTT
ATCGTCAATGATATGGCAACTCTGAATATTGACAAAAGTTTGATCGATCA
GTCAGCCCTTGTTCAAAGTGACGAAGTCATTGCAATGCAAAATGGTTGTT
TTTGCTGCACTCTTCAAAGTGATCTTGTGGATCAGATTGTGTCTTTGGCA
TCAAAGAATATATTTGATTACATGTTGATCGAGGCATCAGGAGTTTCGGA
ACCTGCACAAATTGCTCCACTTTTCGATCTTTGTGAAGATGAGCATGACC
ATGAAGAGGAACATCCAGAAGGACCAGAGCTGGGTGAAGTTGCAAGGCTT
GATACATGTGTTACTGTTATTGATGCAGCTGAATTTTACAATAATCTTGA
AAGTATGAAAATGTACGAGGATGGGGACATGGTTGGAACAATATCAGAAT
TGCTGATGGAACAAGTGGAATATTCCAATGTTGTTATTCTCAATAAACAA
GACTTGGTCAACGAACATCAAAAAGCTGACATCATGGCTAAGATAAAGTT
ATTGAATCCAAGAGCAAAGATTTTGACCACATTTCAAAGCACGATTGATG
TGAGAGAGATTttgaatactaatttgtatagCAAAGAGGCCATGGACGAG
GATGCAGTCATTTGTTCTGCAACAAGgCAGGGTGATTCAGAAGATGACAT
CTACTTACCAGAATGTTGCGTTAAATCTGTTGAATCTGGCAAAAAGAAAT
GttgtaaaagtaaaaacgcTGAGAACAAGCAAATCGTTGATTCTGGAAAA
TCACAACTATTTCTTGGAGTGGTGGACAAAATTTCTGGCAAAAAGCAATT
GACCAGGCATGAAAAACGCTTTGGAATATCTTCCTTTGTTTATCGGTCAA
GAAGGCCTTTTCATCCGGGGCGGTTTAATGAATTATTCTTAGAACCTTTC
TTTATAATGAGAttcgaagaagaaaataacGAACTTGATCAACTTCAGAA
AAGAGCAGCTGAGAAACAAAAAATACGAACGAAAAGCATTGGTGAATTAT
TACGAGCAAAAGGATTTTTATGGATCGCTTCTTCACATGAAGTTCTGGGT
GGCTTTCAGCAAGCTGGCAATGTCGTCAGGGTTGAGGAAGAAGGTCCATG
GATGGTACATCCTGAATGTCGTGACAAATGGGAAGGAACAGATACGGAAG
AGAGAGTTCTGAAAGATATGACAAACGAGAAGGGTGAAGAATATGAATAC
GGCGATCGCCGTCAAGAATTAGTTTTCATCGGAATGACTTTGAAATATGA
AACCATACAAAAAATATTAGATGAATGTCTTTTGACTGACGATGAAATGA
AGTTGGGACCGGAGAAATGGTTTGAGACTATGGAGAGTGAGGATAAATTG
AAACTAAGTTTGGATGTCTCTGATGATGAAGACGAAGATTACGAAGATGA
AAATGGGGAACAAGACGATATCAACGAGGGGGGTGAAAGCGATCCTGAAA
ACGATGATGAAAAGGAAGAACCGAAAGAGATGGGAAAAGTGGTCAATAAC
AAACGAAAAGGTGATGATGTTAAAGAAGAACAAAGACCTGAAAACAAAAA
GactaaaaagaaataaaaacaaaattactATTGCACGTAGATTTTGACTt
ccaattttatattttttgaatcaaATAATGGATCAACTCATACTACCTAA
TCTTTCTTGATATGATAAAGTCTGTTTGGCCTCATATCTCATGACCTGGG
CCTAGTCCTTTTTTGAACCTActccggtggaggtcctttaaattaacctg
tttccttccgtccgtccgtccatcTGATGcaagcttttctcaggattggc
tcattcgATCTTTCTGATTTTCTTGCACAAGGATGCAAAAttgtaatgcc
caaaatgtgacggagcccgtttttcgaaaaatatattaatATACCGAAAA
AACCGGGTTTTTTGGCTATATTTATCATTAGGTAGGTTCAATATACATTG
TGcttgttctttttattttaatcaaaCGCTAACCTAATGGATTTGTGGTC
TTATACTACCTTGTATACTAcatgcggttttgtagaggtctacAATTCAG
ACTAACGCTAGCCCAGCCTCTCGGACATATATGAATACTAAAAGAgtttt
tgagagaatttttgGCATACCACCACCCCACCCCAGTTTAAGTGGTGtct
tagtacacatgtacttaAATTTTTGGGGACATTTTGACACATATACCGCC
CAATTTTAGTCTTTTCTGGACAATTTTTGTCTTCTCGGGACCATTTTGCT
CAAAAGTGATGATTTTGCAacataaaattcaatttttgctcaaatttata
taattatagactaaatttaggctatttagagcaaaataagggaccttctc
ttaAGTTCATAAGGTCTGGCGGgttgaaaaattgtcaaaaaatgaacaag
cgggggggcgtttaattggaacctaagagtatatcTTTTCGATCTTTTAA
TCTATTATACAATAACATAGTTCAATAGGAAAGGTATTGTTATGTTTTTT
GAAGTTGCTACCCATATATAGTATATACATATTAGGCATACTGTATTACG
CTTGTCATGCTTATTATGAACCAGACGCCTATATTAGGCGTAAAATAGAA
ACTCTAAACGAATCATGTCA
Run BLAST on NCBI

transcript from alignment at scaffold_133:314650..322394+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047648 ID=TCONS_00047648|Name=TCONS_00047648|organism=Clytia hemisphaerica|type=transcript|length=7745bp|location=Sequence derived from alignment at scaffold_133:314650..322394+ (Clytia hemisphaerica)
CAGAAAACAACACACACGTAAAAACATGAATATTTAATATATGTTATAAG AAATGGGTTTGGAAGCTGGCcggaaaaacacgaaaaatgcaTTGAAAGGC AACGTGTCAAAACAAGAAAAGGTAATGTGAGCAAAAAAGGCTATTATCTT CCTATACTTTCTTTCTGATCAAATCAATGCTTTTAAAGGCCGGATTCCAC TTGCGTGCGCTGCGAgggcactttttcgagcaaagcttccatgctattgg tcaaaagaaaaatgaagcgatTCCATTGGcacgatctgacgtaacggttg aaaaaagttgaaatgtattcAACTTGTTTTTCGAGCGCACGCTACAtttt aatgacgtaatctttttccaAGCAAATAGAATCGAAGCCAAACGGTGCGA TCGTAGCGCGCCCAAGTGGAGACCGTCCTTAAGAATATCGTGCTAAAAAA CcccaaattttagaaattcgaATCAGAATATAGCTTCAGCATAATAGTGT TATTAGATTTCACCAGGGATATCGAGTCTGATCGGAGTTTCAACCGAATT TAATCCTTCCTTAATAAAGGAGCGAATGCAAAAAAATATCTGATTGTCAT TCGTCGtccacatgactaaaggttcaatctcaaaataagtgccttagaaa attgaaattttttagatTCTGTTCTGTTTTATGATTGGCTTTTTTGTCAT TGGAAAACATTGAATATTCCTCTGTAAGACAAATGAAGAATCCCAATGTC AAAGGTGAACACCAcagtaaaattttgagttttgtaaGGTACatactaat tttgagattgagcCTTGAGTCACGCGAGTGATAAATTTTATAACtccttt tcatttttagaagcaGCCGGATCCAAAAGATCTTCTACCCNAGGCCGGAT TCCACTTGCGTGCGCTGCGAgggcactttttcgagcaaagcttccatgct attggtcaaaagaaaaatgaagcgatTCCATTgacgcgatctgacgtaac ggttgaaaaaagttgaaatgtattcAACTTGTTTTTCGAGCGCACGCTAC AttttaatgacgtaatctttttccaAGCAAATAGAATCGAAGCCAAACGG TGCGATCGTAGCGCGCCCAAGTGGAGACCGTCCTTAAGAATATCGTGCTA AAAAACcccaaattttagaaattcgaATCAGAATATAGCTTCAGCATAAT AGTGTTATTAGATTTCACCAGGGATATCGAGTCTGATCGGAGTTTCAACC GAATTTAATCCTTCCTTAATAAAGGAGCGAATGCAAAAAAATATCTGATT GTCATTCGTCGtccacatgactaaaggttcaatctcaaaataagtgcctt agaaaattgaaattttttagatTCTGTTCTGTTTTATGATTGGCTTTTTT GTCATTGGAAAACATTGAATATTCCTCTGTAAGACAAATGAAGAATCCCA ATGTCAAAGGTGAACACCAcagtaaaattttgagttttgtaaGGTACata ctaattttgagattgagcCTTGAGTCACGCGAGTGATAAATTTTATAACt ccttttcatttttagaagcaGCCGGATCCAAAAGATCTTCTACCCGTTTC ATTGCTCTGTGGCTTTCTGGGAGCGGGTAAAACAACCCTCCTTAAGCACA TCTTGGAGACCAAACACAATGAAGAGGGCTTTAGATGTGCTGTTATCGTC AATGATATGGCAACTCTGAATATTGACAAAAGTTTGATCGATCAGTCAGC CCTTGTTCAAAGTGACGAAGTCATTGCAATGCAAAATGGTTGTTTTTGCT GCACTCTTCAAAGTGATCTTGTGGATCAGATTGTGTCTTTGGCATCAAAG AATATATTTGATTACATGTTGATCGAGGCATCAGGAGTTTCGGAACCTGC ACAAATTGCTCCACTTTTCGATCTTTGTGAAGATGAGCATGACCATGAAG AGGAACATCCAGAAGGACCAGAGCTGGGTGAAGTTGCAAGGCTTGATACA TGTGTTACTGTTATTGATGCAGCTGAATTTTACAATAATCTTGAAAGTAT GAAAATGTACGAGGATGGGGACATGGTTGGTAAGAATGATATTTTTATAT TCATACACTATGATACTTGTGACATGAATAGCATAGCTCAAACTCCTTTC TTTAAGGGGTCATGACCACTGAGCTTTACATAAATCTGAAGtaaaataga aaacaacatGGTGGACTAGTCGACTTCAAAACTGGGCACACTttcatagg ccatttcacagtcgcaaagcgtaatgggtaatcaggaccactgcgcgcta ataacgacttactattggtccaaagttttgaaaaaaattttcaagaaaaa gatttttgcgtctagccaacgggaagccgtaatggaggcgcaatcagtcc tgattacccatgatccatttcgactgtgaaatggcctatgggAAATCTGT GAGAAATTACAATTAGCCTTTCTAGTATGTAAAAGAATATGTGTATCTGT CCTTTCAAAACAACGCCGAACNaccctggaggacactatgtctAGTATGT AAAAGAATATGTGTACCTGTGCTTTCAAAACAACGCCGAACAAAGGTGGT GAATATAGCTTTGTCCAGAGTTTACAAAGGTCAATGGCCAAATGACACCT CTGAAAATCCGAAGAAGAGGATGGGTTGGgatattttcctgaaaaaggTG GTACTTAGATAGGATTTTCGGGTCACGCTCACGATATCCTGTGTCGTCgt ttttttaaaggaaatctTGCTCTATTAGCAGTCAATTGCAAGACCGAATC TTgctggaattttttaaagattttgccAACAAAGTTTTTGTCGTGTATAA AGCGCTTAACAAATCAATAGAGGAATCGCCGTTTATGTGATAGTGATATG ATTTTCTCCATTATGGAAAAATATTCGATTCGCATATATCACTGGTAAGT CATTGGAAGGTTTTCTGTCAACTTTACTCCCAATGTAATATTTCTTATAA CATTCTTAATTTTCTAGGAACAATATCAGAATTGCTGATGGAACAAGTGG AATATTCCAATGTTGTTATTCTCAATAAACAAGACTTGGTCAACGAACAT CAAAAAGCTGACATCATGGCTAAGATAAAGTTATTGAATCCAAGAGCAAA GATTTTGACCACATTTCAAAGCACGATTGATGTGAGAGAGATTttgaata ctaatttgtatagCAAAGAGGCCATGGACGAGGATGCAGTCATTTGTTCT GCAACAAGGTATATAGTTGATTTAGATTTACCAACAGTTTGtctctcacg tttatcgctacgtagtacactctgtgcacaTTGTGCactctgtttgataa aaaaattgcgatgaagtatgatttacaAATAGCAACACgtctctcatcgt ctcccctctcccGCCAAcgctccatcgcagcggtcggtttgaaaaatctc aaatgaaaaaagacaatgacaacagaccctttacggcaatgaaatttgaa ataagccgtagatactgcgtttgtgtacagacaagcaGTTTGTATGATGG CGTGAAATCTGAAAAACTTGATGTGACAGCGTAAATTTTTGGTCTGCTGA AAGGGCAACATGAAGTGACCCGTATAAGCCTAGCTGTGGCACAAAATGCA AAAGCAACCTTTATTTCtaacattcaaaacaaaacgTTCATATGAGGTTT GATGATTATTGAAACAAAGTTGTGTGCCAACTTGGAGAGTTATATTGTGT TTTCTATCTTAAAAAATGGAATTAGCGCCGGATTGCCctgtttttcaaag attttcgaaGTTTACAAGTGTAAAGctataatattatttttcttacaaaa attgcTTTTTCACTAGCACCAAcgttactttttgttttacaaaCTCAATT TTAAATACAGTTTCttcccactgacctttatataccctggaccaagtttc tcaatcttggccaagcaaaatctttgatcggagttttttgaaaagtggta ccctaatggcggcacttctcaatagcggtgtaaatgcattgagggcgcta gatctactttacctcgaaaacttttgatgatgtagcgccatTAGACgttt tttaacactgcaatggattctttacgggtaccaattcaaaaaaaacttcg atcaaagatggcagatatagcttggtccagggattataaaggtcagtgtt tcTTCCACTGAAAAACAGTTGTgaaaaaaagcttgaaaatttcCGTTCAA AACACCATGGAATATAGAGAGtatattttatttaattctattgtttttag gCAGGGTGATTCAGAAGATGACATCTACTTACCAGAATGTTGCGTTAAAT CTGTTGAATCTGGCAAAAAGAAATGttgtaaaagtaaaaacgcTGAGAAC AAGCAAATCGTTGATTCTGGAAAATCACAACTATTTCTTGGAGTGGTGGA CAAAATTTCTGGCAAAAAGCAATTGACCAGGCATGAAAAACGCTTTGGAA TATCTTCCTTTGTTTATCGGTCAAGAAGGCCTTTTCATCCGGGGCGGTTT AATGAATTATTCTTAGAACCTTTCTTTATAATGAGAttcgaagaagaaaa taacGAACTTGATCAACTTCAGAAAAGAGCAGCTGAGAAACAAAAAATAC GAACGAAAAGCATTGGTGAATTATTACGAGCAAAAGGATTTTTATGGATC GCTTCTTCACATGAAGTTCTGGGTGGCTTTCAGCAAGCTGGCAATGTCGT CAGGTAAATTTTGATCTTAAAATTATGTTTAGATATAATCTTTAGCTAGA GGTCATCGATATAGTAAGTACGCCAAAATTTCCGAATATTTGACGTCCCC TCCCCCATCCTCATAGAAACGATGCGATTCGAACAATAATTTATGCTTTT CTAAACCCCCCCCCTTCACTGCTCACGCTTTATATAGATGATCCCCTAGA CTGATCTAAATCTGCGAATATGAGAATTCAATTTGCTTGCATTCCAACCA TCCGTCtcatttggcttaaaaaacaatagaaatcaaattatgggaaaatg ttaagttttgagattcaaAAACTTGGCACGAGGTGAATTATAAGCATTAT AATTcatcataagcatataataagcatagtCTATGCCTTGATGCTTTTGA AAGCTTAAACCTACACGAGCGTGAccaaggggcagacacttgcttataaa aagaagtaTGTATTGTCAGTGAAGATGGACATTTGTTCAAGGACTCTTAC ATCATTTGTGAATTGTTTTATTATAGGGTTGAGGAAGAAGGTCCATGGAT GGTACATCCTGAATGTCGTGACAAATGGGAAGGAACAGATACGGAAGAGA GAGTTCTGAAAGATATGACAAACGAGAAGGGTGAAGAATATGAATACGGC GATCGCCGTCAAGAATTAGTTTTCATCGGAATGACTTTGAAATATGAAAC CATACAAAAAATATTAGATGAATGTCTTTTGACTGACGATGAAATGAAGT TGGGACCGGAGAAATGGTTTGAGACTATGGAGAGTGAGGATAAATTGAAA CTAAGTTTGGATGTCTCTGATGATGAAGACGAAGATTACGAAGATGAAAA TGGGGAACAAGACGATATCAACGAGGGGGGTGAAAGGTAAgatatttttg ttcttttgttacATAATTCGTAGAGAGCACCTAACCGAAAACCGgaattt ttcatctcgtttcttggTGACTTTAGCCTTTACTTTCGATACTCCTGTAG TAGCTAAAAAATCGAATTtacgtcaaagcacttgaaagtcttctattttt cagaaatcgtcaaagtggaacttaccaaaaaacgagatgaaaaatcccag tttttggtgaggtgctcgctatggAAAACCTGGGTTCCCAACAatgcggg tgacgtctagtataggctacataacttttatctgatattccgacggtgta ttggcggccgcccacgctaaagctctgaaggagcgggccaatttaccatc ggagacctatagtagtcatcgtttgatgtaccgcatcacagtCNGAGTTA AAGAGACACCACGCCATCCTTTACGCCTACATCAGTATATCATTGTTCAA ACCTTCGTGCGCGGCTAGACAATTATTATTCGCCGGTTTATCCGAAAAAA TAGCGTGCTTGATTGCTTCTCACTCGGTAACATTTAGCTACTAGCGTACA TAATTCACATTCACATTATGGTTTCTTCTCCTTAAAGGACATCATTTCAA CGCATCTCTTCCCATTTGCTTGCACTACAGCATCTTTAAACGAAAATAAA CAACTCCCGCCCCACGCGAGcacaaaatgctgaaaattctttaaattatt ctgctttgtcagcactAGAAGCGCCTCTTTTCTATATCAAAGTAAGAATA TATACGTACAGTACGCAGCGCTGatgagtcctaataaggacgaaatacAT ATGCTgttctgccacccaaatctcctgagtgaatatagttcaCATATTAT GTCTGAAAAGAAATGTATTTATCTGTCTACGTTTAATATATGTTTTTTTA CTTCCTTTAAAAAGCGATCCTGAAAACGATGATGAAAAGGAAGAACCGAA AGAGATGGGAAAAGTGGTCAATAACAAACGAAAAGGTGATGATGTTAAAG AAGAACAAAGACCTGAAAACAAAAAGactaaaaagaaataaaaacaaaat tactATTGCACGTAGATTTTGACTtccaattttatattttttgaatcaaA TAATGGATCAACTCATACTACCTAATCTTTCTTGATATGATAAAGTCTGT TTGGCCTCATATCTCATGACCTGGGCCTAGTCCTTTTTTGAACCTActcc ggtggaggtcctttaaattaacctgtttccttccgtccgtccgtccatcT GATGcaagcttttctcaggattggctcattcgATCTTTCTGATTTTCTTG CACAAGGATGCAAAAttgtaatgcccaaaatgtgacggagcccgtttttc gaaaaatatattaatATACCGAAAAAACCGGGTTTTTTGGCTATATTTAT CATTAGGTAGGTTCAATATACATTGTGcttgttctttttattttaatcaa aCGCTAACCTAATGGATTTGTGGTCTTATACTACCTTGTATACTAcatgc ggttttgtagaggtctacAATTCAGACTAACGCTAGCCCAGCCTCTCGGA CATATATGAATACTAAAAGAgtttttgagagaatttttgGCATACCACCA CCCCACCCCAGTTTAAGTGGTGtcttagtacacatgtacttaAATTTTTG GGGACATTTTGACACATATACCGCCCAATTTTAGTCTTTTCTGGACAATT TTTGTCTTCTCGGGACCATTTTGCTCAAAAGTGATGATTTTGCAacataa aattcaatttttgctcaaatttatataattatagactaaatttaggctat ttagagcaaaataagggaccttctcttaAGTTCATAAGGTCTGGCGGgtt gaaaaattgtcaaaaaatgaacaagcgggggggcgtttaattggaaccta agagtatatcTTTTCGATCTTTTAATCTATTATACAATAACATAGTTCAA TAGGAAAGGTATTGTTATGTTTTTTGAAGTTGCTACCCATATATAGTATA TACATATTAGGCATACTGTATTACGCTTGTCATGCTTATTATGAACCAGA CGCCTATATTAGGCGTAAAATAGAAACTCTAAACGAATCATGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030343XLOC_030343Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047648-exon-scaffold_133-1491911889:314650..314770TCONS_00047648-exon-scaffold_133-1491911889:314650..314770Clytia hemisphaericaexon
TCONS_00047648-exon-scaffold_133-1510915933:314650..314770TCONS_00047648-exon-scaffold_133-1510915933:314650..314770Clytia hemisphaericaexon
TCONS_00047648-exon-scaffold_133-1575043694:314650..314770TCONS_00047648-exon-scaffold_133-1575043694:314650..314770Clytia hemisphaericaexon
TCONS_00047648-exon-scaffold_133-1491911889:316215..316728TCONS_00047648-exon-scaffold_133-1491911889:316215..316728Clytia hemisphaericaexon
TCONS_00047648-exon-scaffold_133-1510915933:316215..316728TCONS_00047648-exon-scaffold_133-1510915933:316215..316728Clytia hemisphaericaexon
TCONS_00047648-exon-scaffold_133-1575043694:316215..316728TCONS_00047648-exon-scaffold_133-1575043694:316215..316728Clytia hemisphaericaexon
TCONS_00047648-exon-scaffold_133-1491911889:317667..317907TCONS_00047648-exon-scaffold_133-1491911889:317667..317907Clytia hemisphaericaexon
TCONS_00047648-exon-scaffold_133-1510915933:317667..317907TCONS_00047648-exon-scaffold_133-1510915933:317667..317907Clytia hemisphaericaexon
TCONS_00047648-exon-scaffold_133-1575043694:317667..317907TCONS_00047648-exon-scaffold_133-1575043694:317667..317907Clytia hemisphaericaexon
TCONS_00047648-exon-scaffold_133-1491911889:318950..319402TCONS_00047648-exon-scaffold_133-1491911889:318950..319402Clytia hemisphaericaexon
TCONS_00047648-exon-scaffold_133-1510915933:318950..319402TCONS_00047648-exon-scaffold_133-1510915933:318950..319402Clytia hemisphaericaexon
TCONS_00047648-exon-scaffold_133-1575043694:318950..319402TCONS_00047648-exon-scaffold_133-1575043694:318950..319402Clytia hemisphaericaexon
TCONS_00047648-exon-scaffold_133-1491911889:319926..320285TCONS_00047648-exon-scaffold_133-1491911889:319926..320285Clytia hemisphaericaexon
TCONS_00047648-exon-scaffold_133-1510915933:319926..320285TCONS_00047648-exon-scaffold_133-1510915933:319926..320285Clytia hemisphaericaexon
TCONS_00047648-exon-scaffold_133-1575043694:319926..320285TCONS_00047648-exon-scaffold_133-1575043694:319926..320285Clytia hemisphaericaexon
TCONS_00047648-exon-scaffold_133-1491911889:321214..322394TCONS_00047648-exon-scaffold_133-1491911889:321214..322394Clytia hemisphaericaexon
TCONS_00047648-exon-scaffold_133-1510915933:321214..322394TCONS_00047648-exon-scaffold_133-1510915933:321214..322394Clytia hemisphaericaexon
TCONS_00047648-exon-scaffold_133-1575043694:321214..322394TCONS_00047648-exon-scaffold_133-1575043694:321214..322394Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:314650..322394 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
60.4492 55.0719 29.4879 21.1176 6.18379 9.85469 14.0494 11.5578 13.0692 14.4226 20.7519 23.729 46.7543 46.0646 67.6004 64.0603 33.3812 46.9803 35.576 34.0077 38.0866 37.0757 46.4874 45.9009 12.1655 13.6237 26.9583 50.9856 28.1775 33.2899
Blast
BLAST of TCONS_00047648 vs. Swiss-Prot (Human)
Match: CBWD2 (COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.661e-21
Identity = 67/230 (29.13%), Postives = 123/230 (53.48%), Query Frame = 2
Query:  146 LPVSLLCGFLGAGKTTLLKHILETKHNEEGFRCAVIVNDMATLN-IDKSLIDQSALVQSDEVIAMQNGCFCCTLQSDLVDQIVSLAS-KNIFDYMLIEASGVSEPAQIAPLFDLCXXXXXXXXXXXXXXXXXXVARLDTCVTVIDAAEFYNNLESMKMYEDGDMVGTISELLMEQVEYSNVVILNKQDLVNEHQKADIMAKIKLLNPRAKILTTFQSTIDVREILNTNLY 829
            +PV+++ G+LGAGKTTLL +IL  +H++   R AVI+N+    + ++KSL         +E + ++NGC CC+++ + +  I +L   K  FDY+L+E +G+++P  +A +F +  +                   LD  +T++D+     +L   K        G I+E    QV  ++ +++NK DLV E     + A I+ +N   +IL T +S +D+  +L+ + +
Sbjct:   42 IPVTIITGYLGAGKTTLLNYILTEQHSK---RVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETTGLADPGAVASMFWVDAELGSD-------------IYLDGIITIVDSKYGLKHLAEEKPD------GLINE-ATRQVALADAILINKTDLVPEEDVKKLRATIRSINGLGQILETQRSRVDLSNVLDLHAF 248          
The following BLAST results are available for this feature:
BLAST of TCONS_00047648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CBWD21.661e-2129.13COBW domain-containing protein 2 OS=Homo sapiens G... [more]
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