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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047649 ID=TCONS_00047649|Name=TCONS_00047649|organism=Clytia hemisphaerica|type=transcript|length=882bp
gtCCTTACGAAGAGAAGGAGCTCTATgtgctcgaaacgaaggaagatata
tgacgtagcctacgcCCCACACGTACGGTGGGTACACGATAGACTAGATA
CACGGCAGAGATAATAAGGGCGTTATGGGCGGATGTAAAACAAAAAGGAA
GGCGGGTCTTGTTGTCCGATGTACCagcattgaaaatttaaaaattttgt
agaTGCACCGATATCCGGTACAGACAAGGAAACGAAACGAAAGGAGACGT
TCACCATTCACGTTGGCCAGAAAAAACTGTCAAATCCATACCAGTTTTTC
AAAGATCTTAAGTCAAAATGAGTTTTGTTAAGCCAAAAGGGGGTCTATCA
TCAACACCAAAAGAAGGCTTGACCATCGAATACAAAGGAGGTGTCACAAA
TGCTGACGGCAGCAAAGGAAACTTGCTCAATCAACAAAACCTCGTCAAAT
CCTTTCAAAAAGTATACCAGTCTGGTGCAGAATTCGTCCATGTCAAGACT
TCACGTGATCGAATGGTGGTCAATGGCGTGATGGTCGGTTCGTTAGTGAG
TATTGCAATTAGTATGGCTGGTCTCTATAAGATGTCCCAACcgaagaaaa
actaaaataatttatttgtttacacacaacaacaacaatgaaaaaaaaaa
cacaaaaaaatagtaaaatgaCTATACAAAACAAAATGCAGCATATGAAA
CGTGAAATTGTacagaatttgttttttttttattttgactttccTGTTTA
ATAAAAAGTTTCAACAAAATTGAAtttatgtttatattttttctctacca
gtggataccccttaaaatctacaacaaaaaaaggtaccctctatatcctg
atagagaaaacagtaagggctgaaactttttc Run BLAST on NCBI transcript from alignment at scaffold_133:347997..355445+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047649 ID=TCONS_00047649|Name=TCONS_00047649|organism=Clytia hemisphaerica|type=transcript|length=7449bp|location=Sequence derived from alignment at scaffold_133:347997..355445+ (Clytia hemisphaerica)
gtCCTTACGAAGAGAAGGAGCTCTATgtgctcgaaacgaaggaagatata
tgacgtagcctacgcCCCACACGTACGGTGGGTACACGATAGACTAGATA
CACGGCAGAGATAATAAGGGCGTTATGGGCGGATGTAAAACAAAAAGGAA
GGCGGGTCTTGTTGTCCGATGTACCagcattgaaaatttaaaaattttgt
agaTGCACCGATATCCGGTACAGACAAGGAAACGAAACGAAAGGAGACGT
TCACCATTCACGTTGGCCAGAAAAAACTGTCAAATCCATACCAGTTTTTC
AAAGATCTTAAGTCAAAATGAGTTTTGTTAAGCCAAAAGGGGTGAGTAAA
GATTCATTTTTGCATATATTGGGCCATTcaagaatttgtctgtaacaggg
gggacggacgacacaggatttctgaGGGCAAataaaagttttcaccaaaa
ttcaaattttgaaattcagcTTATTGAAAGATAATGGAAGTATCGAAAGT
GCCaagtatttttctaaatttgaaaatttgaagcaaaatctttgatacTT
TCTTAAAGTTTAAATTTAGTAGTTTAAATTCTTCGCCACTGCATCAGGGT
TTTCAGTAAATTTTAGGAAGGTAGGAGACTGAAGGTCAGAGGTCGGCTAC
TATTTTAGTGATGCAGCTATGTGAGAGTCAACTgagggcccaccatggtt
ggtcCCGAAgtgcaagaaaattttgaaaaatcaggcAGTTTTAAGTACTG
AAAAAGCGTTTTTTAGCAATAAAACTATAGAAAAATCTAAGCACACTTAG
TACTTATAAAATGAATATGCTAGCAGACGTTAGGCATGtttaaaagtaaa
caaagagaGTGAATGAGAAAATATTACACTACTGTAAAAGATAGCAATAT
ACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTGAAGAAACACTCAAGAGAATGATATA
AATGAAGTCTTTCATTAACAAGAAGATATGatcacaaaaaataaattttc
agaaacaaAATCATACATCAAGGATATCTTGAAAAGACTTTATGGCCGGC
GACTTTGAGCTAATATTGGGCTTTGAGGTCGGCGAAAATCGCCGGTCGCC
GGCCTCAAATAAAGCCCCTGCTGCATGACGTCAGAACTGCAAACTGGGGT
ACAAAACAGAACACTTTTAAAGATTAATTACGTGTGTTCAGTAAACATCA
GGGATCGAATTAACGATTTAAAAGTGCATCGCACTTTTGTGCGAACGAAG
CGAGCAAATTCTGCTCAAAATATTTTAGGTTTCACGATGCGTTTTTATCA
ATATACGATGCATTCTCCACTGTAAAGaccaatgggccattccagttttt
attcgttaccccccacaatggacgacatggaatttccgtagagcaaattg
ctttcaagaaagtccgtaatttccgtaacaaatttcagtatagacctaac
ttttcatacaaaaattacgggaaacgcgtgtttggactttgtaccctatg
ctgcactcaagcactaggaccaaaatcccgcaaaggcaggacaaaaatca
gttttttgaagtttgcaaaaaaacgccacatagaagatctttcaaattca
gtatgtgaatagagcagtaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ngtttgtaagtgcactttatagttttgattcccattgaagaatcatattc
tggttttcatgttattagatggtgttttagagctttaggtctacactgaa
tTTACAAAATACTTATCAAAACCTtggaattccgttactgtaacctaaaa
aaatcatagaattccaatactttaatgaaaaattaagtaaaattcatgga
attccgatactttctctttaaagtttgcctggaattccgtgccaaattta
tttaaaaaattgatgtcatccattaaggggtaatgtttttttctggaatg
gcccaatttaCAAGCCAAATAACCATCGTATTTGCTTGGAGGCTCAAAAT
GCTGTTAAATTCTTGATATGTTGTATCgcgattttgttgaatttctgaat
ttttgcttcgtacatttcCAAAAACGCATCACGAATCGCGAAACACGATA
CGTTAGTTCGATCGAACCCTGAAACATACTCtcttagtgagttaaaccat
agtgtttattttaccctcaaaattattaaatcttatttGTTGAAAAAAAT
GTCAAGGCTCTGCTTTTGACTAAAacattaccgtcaactgctccaacttg
ggacgagtgtacgcaacatgggacttgttgatatctggcctgtattttca
cttactgttaaatctctttgacaacaaatttgttttgataactccaccaa
gtttatctatcaatcatactttctgtcataacatgtcacgataactttca
ctaaTAGCtcaccctttttaacttttgttttcatttaaaatgactgGACG
CCGAATGGAGGATTAGAGAACGCCcaccgcctaaccgcctacccCCGATG
AGATTAACAAATAGTGAGTGTGTAGCTTGCCAcacgagtgacgtcaaacg
ctcacaTTCGCGTATGttttccactacagatttttttcatatttcgattt
aaaagcctactcggtgcgaaagagaaatcgtgtattttttaatacgcagT
TCAttgaactcaaatcaaatgactttggaggttcggtgaaatggtggtgg
aatggccgtccaatgttgcgtaagatagtcccaagttggagcagttgacg
gtatctattaaattattttaagcAAATTGTGATAAGGATGCAACTTTTAT
AGGACAGTTTAGTTGAGGATAATCAATCATACCGTTAACTCTGCTTGTAG
TTACAAGAACAAAGCGGGAACTCCCCCTAACATCCAGATACTTAATTAAA
TTCAAACNAAGGGGATTACTACAAGAACAAAGCGGGAACTCCCCCTAACA
TCCAGATACTTAATTAAATTCAAacatttgattttctaattttgatacaA
TGAAAAAAAGCATAAAAACTAAAGTTTGAAATCATCAATAATTGCTTTGG
CACTTTTGATACAAGGACTTGTCGTCAAATTTGACAGAATTGCAAATTTA
GGTgatctttcaattttcaaattttgaaattcatgaaatttcttattttt
ttaatttcaaaatttagaaaaatacttGGCACTTTCGATACTTCCATTAA
AAGATAGATACTGAGAGATAGATAGATaccaaattgaaaaattttgtgct
AGTAAAAActcccttaattaaaaccagtcGCTGTTTCCTTGTGTAGATTA
GAGTAATTAGTTCTGCAATAATAGACTGCAACATTCGCTTAAAGAGTATT
TTCCCTTGTCATCCAAAACATTTCCAGTCATGTTGGAGCCAAAACAGCAA
AACATTCTTTAGACCTGAACATTAATGTTTGAGGTAAAATTCCTCCAAAA
ACCTGACCCTAATACACCCTTGAACATGTGCCGCCGGGCCAAGTTTGGGT
CATACTCATGTTTGAGACTTTTTCAACTTCAAAATTATCAATTGGCCGGA
AAATCCCAAGCCATACCATGTAATAGAAGACAACCAATACACTGTGTCAT
AGATGACAACTCACAGCAGGGCCCAACTGAACAATCCTCGAACATGTTCT
ggtcaaaatagcaaaaaattatatttgccTGATCATTGATCATTGACGTT
CAGGCCAAGTTCGGgcaacaaaattttgaatttcaccCCCAAAAACCTTG
CCCAAACATGCCCCAAGCATGTGTGGGCCAGTTCTGGTTATGTTCAGGGC
TTTTTTAAGCTCAAAATCTCTAAGTGGCCTGATAAAACTTCACCAGGCCA
AACCCTAGGTATATACAGTAATTATAGACAGTGAGACAGTTTTTAACACA
AGCACCgcattgaaagcaaaattttaaatatctCATAAAAACAGCTTGTG
TGGATacaactcaaaattttaaaagcctCACCTTTTCGTATGGGAAAGAT
TGAAGGTGCTAAACAAACACTTTCTAGATGTTTTCCTCTCAAAAATAGTG
AGATTTCGGCTAATTATTGTGAGATTAGATTATTTTATGATGATATCATT
CTGTATTATATATATGCCAGATAGGCAATTGAGATTTTTATCATACAACT
TACTGTAAGTAAGCTGTCTGACAGTCAAAAGCATTTTGACTTTGCTTGAT
TTCACCATCACCTTTGATCATTTTATTACGAGATAAAAATAGATTCAAAA
CAAGttatataatttctttttttcctgatttttaaaaattgatcttcatt
tttgatcaaataaACGAACCAACAGAAATTCTGCTGTGAAGAGGCTAAGG
GCCCTTGAACAACAATTTGCCCTTATCAGGAAATTTATATTGTCCAATTT
TGAAGTTCCAATAACAAGACAAGATGTGAGAAACATGTGTCATTAAGATT
TTGGGAGGGGATGAGGGAATATTgactaaagatttttgaaaattccaaaa
aattcaTGACATGGAATGTTTCTCTTTATTTGTTGCAGCTTGAAACATTT
CAGTGGGCTAACtgaaaaaattgcaatgaaatatttttgaggGGGATTAT
CTCATCTCAGTTTCTATATATTTTCAATACACTTTAAACTATACATGATG
TGGGAGAAATTATATATTTGACAAAATTATGAAGCTCAAATTGATAAATC
TGGAAAATCTCTTAATAAAAGCCaaggaaaatcagaaaatacttaaacct
tgaaaaatcattttgataTCTCTGTATTGCTTTGAGTTTGAACAGAGCGG
TACTTAAATCTCGGACATTATATGAGTACCAAAAAAGGgttttcaagaaa
ctttttgcaTGTCACCAAACTCGTATCCAGTCCCTTAgcttgctttttga
tgattctgatagcgctcacaaAAGGCACTGGTAAACACCTATGAAAAAAC
aggagattttttgttttttaatttatggtgttcaatatttttttcacatG
TCCAAAGCTATTTTCACGTCATATATTGACATAATAGTTGTTTAGGAGAA
TAATTGACCGTCGTGTTCTCCTAAAGGTCTATTAGTAACAAGTGTCAAAT
CAAATTGGGAAGAGTTACTTTATGTTTGCGTGATGTTTTGTCAATTGTCA
ATCAAATGCGAATGTCCTAATTAGATTATAGAAGATTTTAGTACTGAGAT
TCGAATGATACTTTAGTtccaataaattttaaaaattaaaaaaaatgtat
gaCCAGCTTTTATCTCTATCTATGTTAGGGTCTATCATCAACACCAAAAG
AAGGCTTGACCATCGAATACAAAGGAGGTGTCACAAATGCTGACGGCAGC
AAAGGAAACTTGCTCAATCAACAAAACCTCGTCAAATCCTTTCAAAAAGT
ATACCAGGTAGGAAAATGGAGTTTTTTTGTGTTATTTGCTAAAAACCTTT
AGAGTCTTATCTAATTTAATGCTACCCTAGTGGGTTACTTAAATTTATGA
ATTATTTGGGTGGTACTTTGAGGATAATCTCCCCAGGTTACTAATATAAG
GGGTATGCGGAATCTTAAAACGCTGGTTAGGCAGATCTAAAAGTCGACTC
agtcagatacacatcttgaaaatgagttaatttgggaccctgtcagatat
tcTCAGAGCccaaaaaagggaccctgaccagcggcacgtccctgtACCCG
ATTTTGCCTACTTAAGTACCTTCTCCCCCATTCCATCCGCACGTAGCAGG
ATGGATTGaatatttgttcaaaaaaaCTGATAGACTGGGATGTTCATAGT
GTGGCGAGGGGTCTGACCCCCCATTAatatttgatccccccctatATATG
CATCCCccctatttcaaaaaattttcgaacccGCACTAAGTTGTGAACCA
CTTTAATTGTACAATACTACATATTTTTACCAAAAGGTTGTTATCCCcct
atttttatttaatacCCCCTAAAAACTCAAATCCCCCATTTTACTCGGAA
AATCTCTtatccccccctataaagcctttCTTGAAAAGGGACCCCACTAT
GGTGTTGAGTAAGAATGTTCTGTTTTAAAATGGAATGAATTTTCACAAGG
AGACATTTCTACTgtgatatctttatttttcatacaGTCTGGTGCAGAAT
TCGTCCATGTCAAGACTTCACGTGATCGAATGGTGGTCAATGGCGTGATG
GTCGGTTCGTTAGTGAGTATTGCAATTAGTATGGCTGGTCTCTATAAGAT
GTCCCAACcgaagaaaaactaaaataatttatttgtttacacacaacaac
aacaatgaaaaaaaaaacacaaaaaaatagtaaaatgaCTATACAAAACA
AAATGCAGCATATGAAACGTGAAATTGTacagaatttgttttttttttat
tttgactttccTGTTTAATAAAAAGTTTCAACAAAATTGAAtttatgttt
atattttttctctaccagtggataccccttaaaatctacaacaaaaaaag
gtaccctctatatcctgatagagaaaacagtaagggctgaaactttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047649-exon-scaffold_133-1491911889:347997..348337 | TCONS_00047649-exon-scaffold_133-1491911889:347997..348337 | Clytia hemisphaerica | exon |
| TCONS_00047649-exon-scaffold_133-1510915933:347997..348337 | TCONS_00047649-exon-scaffold_133-1510915933:347997..348337 | Clytia hemisphaerica | exon |
| TCONS_00047649-exon-scaffold_133-1575043694:347997..348337 | TCONS_00047649-exon-scaffold_133-1575043694:347997..348337 | Clytia hemisphaerica | exon |
| TCONS_00047649-exon-scaffold_133-1491911889:354175..354303 | TCONS_00047649-exon-scaffold_133-1491911889:354175..354303 | Clytia hemisphaerica | exon |
| TCONS_00047649-exon-scaffold_133-1510915933:354175..354303 | TCONS_00047649-exon-scaffold_133-1510915933:354175..354303 | Clytia hemisphaerica | exon |
| TCONS_00047649-exon-scaffold_133-1575043694:354175..354303 | TCONS_00047649-exon-scaffold_133-1575043694:354175..354303 | Clytia hemisphaerica | exon |
| TCONS_00047649-exon-scaffold_133-1491911889:355034..355445 | TCONS_00047649-exon-scaffold_133-1491911889:355034..355445 | Clytia hemisphaerica | exon |
| TCONS_00047649-exon-scaffold_133-1510915933:355034..355445 | TCONS_00047649-exon-scaffold_133-1510915933:355034..355445 | Clytia hemisphaerica | exon |
| TCONS_00047649-exon-scaffold_133-1575043694:355034..355445 | TCONS_00047649-exon-scaffold_133-1575043694:355034..355445 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_133 | supercontig | scaffold_133:347997..355445 + |
Blast
The following BLAST results are available for this feature:
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