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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047650 ID=TCONS_00047650|Name=TCONS_00047650|organism=Clytia hemisphaerica|type=transcript|length=1781bp
tataaagaaagaaaagctctatctagtgttttatataaaatATCTGTGTC
CGTACCCACATTGGTTCTCTAACATGGCGGCCTAAACGTGTGAACCTATC
AACGTGTGTCGAAAGACGTTTCCCGATACAATCAATCAAGAGACGCTTTT
CAAGATTTTGTAAACTTCTCCTGTCGTGAATTGATTTTCGACGTCGCTTG
ATTTGAAAACGTCTTTTGTTTAAAAGCAACTCTTTCACTCTATCCAAAAG
ATAAAATAACATCATTTTTCAAAGATGGGGacaattattaaaattttcag
agACATACCAAAGCTAAATCATTTAGCAAGAATATCAACTTCTGTTATTA
CACCAACAAGAGTAAAAAATGAGGTCAAAAGGCCACCCTCTCCCTTCGCA
TTGTTTTTCCAAGAGAAatggcaaaatttaaaaacggACAACCCAGAAAT
GAATCAAAATGATTTGATGAAATTAGCATCTAATATGTGGAAAAATTCTG
GCTCGTATGAACAACAAAGATACAGAGACATCTTTGATGATAAAATGTCA
ACATATAAACAGTCTGTCAAGACACCCCCAAAACGTCCCATCAACTCCTA
CATTCGATTTTACATGGACAATTTGGATTCGCTAAGTGTTATATATCCAA
ACGTGACTGATCGTTCGAAAAAGACTGCAGAAATGTGGAAAAATCTTTCC
GATTTTGAGAAAGCGAAATATAAGCGTGAGTATGAACGAGATTTGGGTGA
ATTTATTCAAAACCTAACGGATGAAGATAAAGAGCTTATACAAAACAGAC
GACAAAGCTTGAATGACCAACGAGAGCGACGTGCCATTAAGAAATACGGT
AAAGCAGCATGGAACGAAAAACCCAAAGTCGGTGCACCGAATTCTTACAT
CGCTTACATTCGTGAACACTCGGCATTGGTACCGAAAGGCGAGAATTCGT
TCGTTTATTTGAGCAAATCGTGGAAAGAATTAAGCGAttctgaaaaaagt
gtttaccaAGAGAAAGCTGATCAGTTATTCGAACTTGAACAACAAAAACT
CTCCGAATGGGAAGCTAAAAACGTAAAGGTCTGATTTGAGACTTAATTTG
CTCATTGCTATGTGATGGGGAAGATTAGGAGACCACTTAGCTTCGACATA
GCTTAGCAACTCTGCTTTACAAAACGCCCTAAAAGGACTTTAGGATTCTG
GAGGTCATCATTGCGTAGTTTTTTTACATAGACATCTTTCTTGTTAGCTT
TACTGGCGTCAAGAAGATATAAGCTTTTGTAGATATAAGCTTTTGtagat
attttttataaaaaaagaatcatTTTATTCGTAAGATGGACAGATTCAAA
ATAGAAAACTAGAAATGGAAAAATGTTCACGTTATTGCTTTTCTTATTTA
CAAAGTTATTAAATTTACATTATTTACATTGAATTTCGGGATGACTTCAc
gcccagctgacacacaacgtcgtttcagcgttcatctaatgttcacaacg
tccatataacgttagatgaacgttgtaacaacgttgtgtgccagctgagc
GTGTGCCTTtacaatgaaaatatttttccttattAAAATCAATGACCAGA
CGCCCGAATACGTTGTGAATGTTGCATTATTGCCAGGCAGTCTTGAGATG
AACTTTGTAAACTACATGGAATCAAGTGTAAAGAGTATCCATAACATACT
AgaaaacaaatataaaaaagacataGCTTAGCCTGTTATATTTTGTATTA
ATCAAAATGTTGAATTTTATTACAGATCCGG Run BLAST on NCBI protein sequence of TCONS_00047650-protein >TCONS_00047650-protein ID=TCONS_00047650-protein|Name=TCONS_00047650-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
MGTIIKIFRDIPKLNHLARISTSVITPTRVKNEVKRPPSPFALFFQEKWQ
NLKTDNPEMNQNDLMKLASNMWKNSGSYEQQRYRDIFDDKMSTYKQSVKT
PPKRPINSYIRFYMDNLDSLSVIYPNVTDRSKKTAEMWKNLSDFEKAKYK
REYERDLGEFIQNLTDEDKELIQNRRQSLNDQRERRAIKKYGKAAWNEKP
KVGAPNSYIAYIREHSALVPKGENSFVYLSKSWKELSDSEKSVYQEKADQ
LFELEQQKLSEWEAKNVKV Run BLAST on NCBI transcript from alignment at scaffold_133:402913..406968+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047650 ID=TCONS_00047650|Name=TCONS_00047650|organism=Clytia hemisphaerica|type=transcript|length=4056bp|location=Sequence derived from alignment at scaffold_133:402913..406968+ (Clytia hemisphaerica)
tataaagaaagaaaagctctatctagtgttttatataaaatATCTGTGTC
CGTACCCACATTGGTTCTCTAACATGGCGGCCTAAACGTGTGAACCTATC
AACGTGTGTCGAAAGACGTTTCCCGATACAATCAATCAAGAGACGCTTTT
CAAGATTTTGTAAACTTCTCCTGTCGTGAATTGATTTTCGACGTCGCTTG
ATTTGAAAACGTCTTTTGTTTAAAAGCAACTCTTTCACTCTATCCAAAAG
ATAAAATAACATCATTTTTCAAAGATGGGGacaattattaaaattttcag
agACATACCAAAGCTAAATCATTTAGCAAGAATATCAACTTCTGTTATTA
CACCAACAAGAGTAAAAAATGAGGTAGCtttatagttttttttgttGAGT
TTTCNGAACAACAGTAAAAAATGAGGTACCtttatagttttttttgttga
gtttcaacctttctatcctATTTCATTCCTATCATAGTATCTCTGAAATG
GAATTAGATGACATTAGACCAATTTACGGTATCTCGTCTAATGCTGAAAC
CCTTCTTATAGATAGGATTAAAAGGTTGGTCagtcggaatcactgattga
aaaagattttttcctcccTCTAATCGTCAATTAGTGACCGTGAATCGTGA
ATTAGGCGGATctctaaaaattgtttggttcccgtcatccgaccgaccct
gattcTTACTCTGAAGTTAGAGTCAGAGAGTCGGAGACCCCTTTTGCCAC
TTCTGGATtcctaatagaccttttcgcctttgcgtccgccatattgaatt
gtatgcaaaaatacaggaacgaaaatgccgtggttggatttagttggaat
gtatgcaaaacctatgcaagtttacacaaagattaaaaagacaacaaagc
atcttataaataaatattataatcattagaacaataaaagatggaatttc
ttaatccaaaaggaaatatttacagaacaacaaaagccttttaggaattt
gttcttaaagacattgcatattctgttttcatgccattaagaaattccac
gaagacggagtacacacatcaaactttcaaaacacgcaaactgaaagcag
taattatgacgtcacactttatcaatgttttgatttgatcatttggcggc
tctattcccaggagaataatttgtcagccgaataaggattgttttttacc
ttcgcgggtgatttttcagtttgagattctgtctaatgttatggtctttt
gaagtgcttgttctaagagatgagtgaatataattgtttttagttttcaa
gagaagcaaatttaatctttcttctacaagattacactttaatataatgc
caattatgcatctaagtttttatttaatactttctttttgcatatgtttt
gcatactttctaagggaatttcaccacggcaattcggcattcaaccataa
tttttgcatacaattcaatatggcggacgcaaaggcgaaaaggtctattg
tcaaCCTCTGCGCGCtcagtgtttacaagttttcaaatcgaaatagCGAG
CGGCGCGTCAGCGGGTCAGCGGAAAGTAAATTTTTAAAGATCCGCCTTAG
TGATTTTCAAAGGGCTCTTTTCAATAAAGTATAAGCCTGTGCTGAAGGAC
TAGTAAGCAAATCTCCTTGGTTGGATTTTAAGCCAACTAATCCTACcaaa
gtttttacaaaaatgggagattgaaactaaaatttaccacccaattttgg
aaaagtatatcactcaaaaacaaaggaattgctagatttaCTATACTGTA
ATCCAATCAATTCACTTCTGAAAATTGACTGAggtaaattttcgaaaatc
tcaGACTCCTCGCCCTCGCCCTAAGTAAGGCTTAGTTATAAAATTATAgg
atgttgttttttcattctttcTATATCTCTTCAGGTCAAAAGGCCACCCT
CTCCCTTCGCATTGTTTTTCCAAGAGAAatggcaaaatttaaaaacggAC
AACCCAGAAATGAATCAAAATGATTTGATGAAATTAGCATCTAATATGTG
GAAAAATTCTGGCTCGTATGAACAACAAAGATACAGAGACATCTTTGATG
ATAAAATGTCAACATATAAACAGTCTGTCAAGGTAATTATTTTAATTGAG
TTATAAGTGATTGATTCCACTTTCTAATAATAGGccttaaaatttaaatt
atattGACGGCAACCACTGAAAAAATCtcatattttttgaatatttttta
aacatttttttagatttttagatctttctaaaaatttatcccattataaa
gtatatcaaaacatatcagaagGGATGTCTGCAGCAGCCTAAGCATAGTG
GGACTCTCTCGGTGTCATTGTTGCAATTCCCtcccaaaaaagtaaaaaat
gacCCTGAATCATATTTATAATATTTATAGACACCCCCAAAACGTCCCAT
CAACTCCTACATTCGATTTTACATGGACAATTTGGATTCGCTAAGTGTTA
TATATCCAAACGTGACTGATCGTTCGAAAAAGACTGCAGAAATGTGGAAA
AATCTTTCCGATTTTGAGAAAGCGAAATATAAGCGTGAGTATGAACGAGA
TTTGGGTGAATTTATTCAAAACCTAACGGATGAAGATAAAGAGCTTATAC
AAAACAGACGACAAAGCTTGAATGACCAACGAGAGCGACGTGCCATTAAG
AAATACGGTAAAGCAGCATGGAACGAAAAACCCAAAGTCGGTGCACCGAA
TTCTTACATCGCTTACATTCGTGAACACTCGGCATTGGTACCGAAAGGCG
AGAATTCGTTCGTTTATTTGAGCAAATCGTGGAAAGAATTAAGCGAttct
gaaaaaagtgtttaccaAGAGAAAGCTGATCAGTTATTCGAACTTGAACA
ACAAAAACTCTCCGAATGGGAAGCTAAAAACGTAAAGGTCTGATTTGAGA
CTTAATTTGCTCATTGCTATGTGATGGGGAAGATTAGGAGACCACTTAGC
TTCGACATAGCTTAGCAACTCTGCTTTACAAAACGCCCTAAAAGGACTTT
AGGATTCTGGAGGTCATCATTGCGTAGTTTTTTTACATAGACATCTTTCT
TGTTAGCTTTACTGGCGTCAAGAAGATATAAGCTTTTGTAGATATAAGCT
TTTGtagatattttttataaaaaaagaatcatTTTATTCGTAAGATGGAC
AGATTCAAAATAGAAAACTAGAAATGGAAAAATGTTCACGTTATTGCTTT
TCTTATTTACAAAGTTATTAAATTTACATTATTTACATTGAATTTCGGGA
TGACTTCAcgcccagctgacacacaacgtcgtttcagcgttcatctaatg
ttcacaacgtccatataacgttagatgaacgttgtaacaacgttgtgtgc
cagctgagcGTGTGCCTTtacaatgaaaatatttttccttattAAAATCA
ATGACCAGACGCCCGAATACGTTGTGAATGTTGCATTATTGCCAGGCGAC
CCTAGTATTGAATGTTGCATTATTGCCctagcgaccgtagtacagtggta
gagcatccggctacggttcgcaaggttgtgggttcaacccccagccgggt
cataccaaagattcccaaaatggtactNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNgggagaaagagtggcgccctcccctaccttcgggtagatagct
atcgaaagaggagccttcgggtcgcctccgactgcggtcgcagacttact
actATTGCCAGGCAGTCTTGAGATGAACTTTGTAAACTACATGGAATCAA
GTGTAAAGAGTATCCATAACATACTAgaaaacaaatataaaaaagacata
GCTTAGCCTGTTATATTTTGTATTAATCAAAATGTTGAATTTTATTACAG
ATCCGG Coding sequence (CDS) from alignment at scaffold_133:402913..406968+ >TCONS_00047650 ID=TCONS_00047650|Name=TCONS_00047650|organism=Clytia hemisphaerica|type=CDS|length=2430bp|location=Sequence derived from alignment at scaffold_133:402913..406968+ (Clytia hemisphaerica)
ATGGGGacaattattaaaattttcagagACATACCAAAGCTAAATCATTT
AGCAAGAATATCAACTTCTGTTATTACACCAACAAGAGTAAAAAATGAGG
TCAAAAGGCCACCCTCTCCCTTCGCATTGTTTTTCCAAGAGAAatggcaa
aatttaaaaacggACAACCCAGAAATGAATCAAAATGATTTGATGAAATT
AGCATCTAATATGTGGAAAAATTCTGGCTCGTATGAACAACAAAGATACA
GAGACATCTTTGATGATAAAATGTCAACATATAAACAGTCTGTCAAGACA
CCCCCAAAACGTCCCATCAACTCCTACATTCGATTTTACATGGACAATTT
GGATTCGCTAAGTGTTATATATCCAAACGTGACTGATCGTTCGAAAAAGA
CTGCAGAAATGTGGAAAAATCTTTCCGATTTTGAGAAAGCGAAATATAAG
CGTGAGTATGAACGAGATTTGGGTGAATTTATTCAAAACCTAACGGATGA
AGATAAAGAGCTTATACAAAACAGACGACAAAGCTTGAATGACCAACGAG
AGCGACGTGCCATTAAGAAATACGGTAAAGCAGCATGGAACGAAAAACCC
AAAGTCGGTGCACCGAATTCTTACATCGCTTACATTCGTGAACACTCGGC
ATTGGTACCGAAAGGCGAGAATTCGTTCGTTTATTTGAGCAAATCGTGGA
AAGAATTAAGCGAttctgaaaaaagtgtttaccaAGAGAAAGCTGATCAG
TTATTCGAACTTGAACAACAAAAACTCTCCGAATGGGAAGCTAAAAACGT
AAAGGTCTGAATGGGGacaattattaaaattttcagagACATACCAAAGC
TAAATCATTTAGCAAGAATATCAACTTCTGTTATTACACCAACAAGAGTA
AAAAATGAGGTCAAAAGGCCACCCTCTCCCTTCGCATTGTTTTTCCAAGA
GAAatggcaaaatttaaaaacggACAACCCAGAAATGAATCAAAATGATT
TGATGAAATTAGCATCTAATATGTGGAAAAATTCTGGCTCGTATGAACAA
CAAAGATACAGAGACATCTTTGATGATAAAATGTCAACATATAAACAGTC
TGTCAAGACACCCCCAAAACGTCCCATCAACTCCTACATTCGATTTTACA
TGGACAATTTGGATTCGCTAAGTGTTATATATCCAAACGTGACTGATCGT
TCGAAAAAGACTGCAGAAATGTGGAAAAATCTTTCCGATTTTGAGAAAGC
GAAATATAAGCGTGAGTATGAACGAGATTTGGGTGAATTTATTCAAAACC
TAACGGATGAAGATAAAGAGCTTATACAAAACAGACGACAAAGCTTGAAT
GACCAACGAGAGCGACGTGCCATTAAGAAATACGGTAAAGCAGCATGGAA
CGAAAAACCCAAAGTCGGTGCACCGAATTCTTACATCGCTTACATTCGTG
AACACTCGGCATTGGTACCGAAAGGCGAGAATTCGTTCGTTTATTTGAGC
AAATCGTGGAAAGAATTAAGCGAttctgaaaaaagtgtttaccaAGAGAA
AGCTGATCAGTTATTCGAACTTGAACAACAAAAACTCTCCGAATGGGAAG
CTAAAAACGTAAAGGTCTGAATGGGGacaattattaaaattttcagagAC
ATACCAAAGCTAAATCATTTAGCAAGAATATCAACTTCTGTTATTACACC
AACAAGAGTAAAAAATGAGGTCAAAAGGCCACCCTCTCCCTTCGCATTGT
TTTTCCAAGAGAAatggcaaaatttaaaaacggACAACCCAGAAATGAAT
CAAAATGATTTGATGAAATTAGCATCTAATATGTGGAAAAATTCTGGCTC
GTATGAACAACAAAGATACAGAGACATCTTTGATGATAAAATGTCAACAT
ATAAACAGTCTGTCAAGACACCCCCAAAACGTCCCATCAACTCCTACATT
CGATTTTACATGGACAATTTGGATTCGCTAAGTGTTATATATCCAAACGT
GACTGATCGTTCGAAAAAGACTGCAGAAATGTGGAAAAATCTTTCCGATT
TTGAGAAAGCGAAATATAAGCGTGAGTATGAACGAGATTTGGGTGAATTT
ATTCAAAACCTAACGGATGAAGATAAAGAGCTTATACAAAACAGACGACA
AAGCTTGAATGACCAACGAGAGCGACGTGCCATTAAGAAATACGGTAAAG
CAGCATGGAACGAAAAACCCAAAGTCGGTGCACCGAATTCTTACATCGCT
TACATTCGTGAACACTCGGCATTGGTACCGAAAGGCGAGAATTCGTTCGT
TTATTTGAGCAAATCGTGGAAAGAATTAAGCGAttctgaaaaaagtgttt
accaAGAGAAAGCTGATCAGTTATTCGAACTTGAACAACAAAAACTCTCC
GAATGGGAAGCTAAAAACGTAAAGGTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00047650-exon-scaffold_133-1491911889:402913..403285 | TCONS_00047650-exon-scaffold_133-1491911889:402913..403285 | Clytia hemisphaerica | exon |
| TCONS_00047650-exon-scaffold_133-1510915933:402913..403285 | TCONS_00047650-exon-scaffold_133-1510915933:402913..403285 | Clytia hemisphaerica | exon |
| TCONS_00047650-exon-scaffold_133-1575043694:402913..403285 | TCONS_00047650-exon-scaffold_133-1575043694:402913..403285 | Clytia hemisphaerica | exon |
| TCONS_00047650-exon-scaffold_133-1491911889:404847..405044 | TCONS_00047650-exon-scaffold_133-1491911889:404847..405044 | Clytia hemisphaerica | exon |
| TCONS_00047650-exon-scaffold_133-1510915933:404847..405044 | TCONS_00047650-exon-scaffold_133-1510915933:404847..405044 | Clytia hemisphaerica | exon |
| TCONS_00047650-exon-scaffold_133-1575043694:404847..405044 | TCONS_00047650-exon-scaffold_133-1575043694:404847..405044 | Clytia hemisphaerica | exon |
| TCONS_00047650-exon-scaffold_133-1491911889:405343..406407 | TCONS_00047650-exon-scaffold_133-1491911889:405343..406407 | Clytia hemisphaerica | exon |
| TCONS_00047650-exon-scaffold_133-1510915933:405343..406407 | TCONS_00047650-exon-scaffold_133-1510915933:405343..406407 | Clytia hemisphaerica | exon |
| TCONS_00047650-exon-scaffold_133-1575043694:405343..406407 | TCONS_00047650-exon-scaffold_133-1575043694:405343..406407 | Clytia hemisphaerica | exon |
| TCONS_00047650-exon-scaffold_133-1491911889:406824..406968 | TCONS_00047650-exon-scaffold_133-1491911889:406824..406968 | Clytia hemisphaerica | exon |
| TCONS_00047650-exon-scaffold_133-1510915933:406824..406968 | TCONS_00047650-exon-scaffold_133-1510915933:406824..406968 | Clytia hemisphaerica | exon |
| TCONS_00047650-exon-scaffold_133-1575043694:406824..406968 | TCONS_00047650-exon-scaffold_133-1575043694:406824..406968 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_133 | supercontig | scaffold_133:402913..406968 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR009071 | HMG_box_dom |
Blast
The following BLAST results are available for this feature:
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