TCONS_00047667 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047667
Unique NameTCONS_00047667
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1462

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047667 ID=TCONS_00047667|Name=TCONS_00047667|organism=Clytia hemisphaerica|type=transcript|length=1462bp
GCTTGTTTTTGCTGTACTTTTTAATCATTGTGCATTCATGTCAATGACGA
ATAATCAGTATCTACTCGAACTAAAtgAAGAAGATACAAGTATGCAACAA
AGGGGAAATAGAAGGAACAAAGgaAAGCAGCCACCGCAACAGCAACAGTT
TTACCAACCTTCACAGCAACAAAATTCATATACTCCAGAACTATTCGATG
ATATGTCAGCCTACAACCAACAACCACAACAAACCACACCACCAAGTAGT
ATGATGCAACCCAATCAGCCGATGCAACCAGCTCAAATGACATTCCCAGG
ACAAGAGCTTCTACAAGATCCAAACATGGCAAACATGGCAACTAATATGG
CGATGCAATATGGACAGCAGTTTATGCCGGCTGGTAAAGAGTTTGTTGAA
AAGAAGCTTGATCATTTCTTgtcagtttcaaaattgaagTATTATTTTGC
TGTTGACACTACTTACGTCCTCAAGAAATTAGGATTACTTGTCTTCCCAT
TCGCACATAAGgaTTGGTCTTTGAAATATGATAATGCAGAACCAGTTGCT
CCTCGCTTTGAGATCAATGCTCCTGACCTTTATATTCCATCTATGGCTTT
CGTTACATATGTATTGGTTTGCAGTGTAATACTTGGTACACAGAATAGAT
TCACTCCAGAGCAGCTAGGAATGACAGCAAGTTCAGCATTTGTTTGGTTA
TGTATTGAATTAATTGTCATCGTAATGATTATGTATTTAATTGGTATCTC
TGGTAATATCAAATATTTGGATATACTTTCTTTTTGTGGTTACAAATATG
TTGGAATGATATTGACATCAGTATGCGGATTACTATTCGAAACCACTGGA
TATTATGCTTCCCTTTTATGGTGTAGTGTGGCTATCTCATTTTTCATAGC
TCGATCACTTCGCCTTGTCATTAATCCTGAGGATCATTCAGACAGCGTAT
CTCGATCAACCAGTGGTAATAAACGACGTCTATACATTCTACTCACTGTC
TCACTTATTCAACCAGTTTTCATGTACTTTTTAACGAAACATTTGATTCA
TTATACACCAccgaaaattatgaaaatgtctGGATAATAAAAGCAATGGA
ATCCTTTTTGAGAGAGAAGTTTTTAGTTTTATgtcaaattgtgaaattgt
aTTTAACAATGGCTTTGGGAAAATCTAGTTCAGCCATAATATCGAAATAT
CTGTTGGAGAAATTGGTATTGGGTTCGAAAACAATCCACGAATCATCAGT
AGAAAATATCGAAGATTGCGGTTTCAGATAACATCGTTGTCAGTGAAGAC
CCGAAGAAGATTCTGACGATTATAACTTGatcattttttttaactgacGA
TTATAACTTGatcatctatatattaatagcggtagtctgtatgtcgtttt
gtcgtctttctttctgtctgtgctactttcgttttcgcacgcaatgtttt
tgttcttccaaa
Run BLAST on NCBI

protein sequence of TCONS_00047667-protein

>TCONS_00047667-protein ID=TCONS_00047667-protein|Name=TCONS_00047667-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
LVFAVLFNHCAFMSMTNNQYLLELNEEDTSMQQRGNRRNKGKQPPQQQQF
YQPSQQQNSYTPELFDDMSAYNQQPQQTTPPSSMMQPNQPMQPAQMTFPG
QELLQDPNMANMATNMAMQYGQQFMPAGKEFVEKKLDHFLSVSKLKYYFA
VDTTYVLKKLGLLVFPFAHKDWSLKYDNAEPVAPRFEINAPDLYIPSMAF
VTYVLVCSVILGTQNRFTPEQLGMTASSAFVWLCIELIVIVMIMYLIGIS
GNIKYLDILSFCGYKYVGMILTSVCGLLFETTGYYASLLWCSVAISFFIA
RSLRLVINPEDHSDSVSRSTSGNKRRLYILLTVSLIQPVFMYFLTKHLIH
YTPPKIMKMSG
Run BLAST on NCBI

transcript from alignment at scaffold_133:289578..294148-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047667 ID=TCONS_00047667|Name=TCONS_00047667|organism=Clytia hemisphaerica|type=transcript|length=4571bp|location=Sequence derived from alignment at scaffold_133:289578..294148- (Clytia hemisphaerica)
GCTTGTTTTTGCTGTACTTTTTAATCATTGTGCATTCATGTCAATGACGA
ATAATCAGTATCTACTCGAACTAAATGGTATTTATTTTTAATTAAAAATA
CATGTTAATGCATTTCAGTATCATTCACATTTCATCCAATTCAAAAGTAG
ACACACAAACATCAATAATTTTTTGATTCTTGCTAGTACTACTAATTCTT
CATGACTCATAGCATCTGTTTGCAATTTTTGACTTTTGCAGAAGAAGATA
CAAGTATGCAACAAAGGGGAAATAGAAGGAACAAAGGTACCAAGATTAAT
CATTTTTCATACATTCACACACTAATTAGTAAATTGCAAAATATTCTTTA
ACTGTTAGGCTATACTTGTAAAATGAATTTCTTTTTACAGGAAAATTGAG
TCCTTTAGATTCTTATTGATCTTTACTTTCAAAATTACTCACCCTAATGA
CATTCGGAGAACACTCAATGACATCATTTTACGTCACATAACTCACACTC
TGTACAAAAACATAGAATTGATTATACATACAGTATTTTCATCAGCAAAT
TTTTTTTAGGAAAGCAGCCACCGCAACAGCAACAGTTTTACCAACCTTCA
CAGCAACAAAATTCATATACTCCAGAACTATTCGATGATATGTCAGCCTA
CAACCAACAACCACAACAAACCACACCACCAAGTAGTATGATGCAACCCA
ATCAGCCGATGCAACCAGCTCAAATGACATTCCCAGGACAAGAGCTTCTA
CAAGATCCAAACATGGCAAACATGGCAACTAATATGGCGATGCAATATGG
ACAGCAGTTTATGCCGGCTGGTAAAGAGTTTGTTGAAAAGAAGGTATCAA
ACTAATGTGGGTTTTTTACAATGTTTATTTAGAAAAGGTGTTATTCTGTT
GAATTAAATTTGCATCACTCAGAACAATTATAACAAAATACCTTCCGTTG
TAATTACTTAGTTTCAGTTCTAGCGTCTGTAAAACTCTTTGCATTTTCAA
AATCATTTCGTGATTGCAATATATCCAAATAATAATAACTTTATAGTAAC
AAATGTTTTGAGTGACAAACTCCGAAAAATTTAACAGATTTTAGACAACT
GAGAAATTGTTTCCAAGATGGCAGGTCTATGAATATTTCTAGGAGATATC
TGATATTGATATTGACTACTTTTCCATTTTAGCTTGATCATTTCTTGTCA
GTTTCAAAATTGAAGTATTATTTTGCTGTTGACACTACTTACGTCCTCAA
GAAATTAGGATTACTTGTCTTCCCATTCGCACATAAGGTGAAAATCATTA
TTAATGTTATAATTCCAATGTGAAGTACATGGCAAGTTTCAAGATTTTTT
GGTATCAAAACGTCTTATCTTAGCTTCAGATGATGGTTTTTAGAAAGCAT
TGAAGGATTATGGAAAGAATCTTTTGGTCTATATTTCATTTTTGCTATCC
CTTTAAATTCTGACTAGTACATTGACCTTAAGCATGCACTCTTTTTCGCT
ACTATGTAGAAACCACTCTTGAGAGCTGACATGGTTTCTACACAGTAGCA
AAGAAGAGTGCACACTAAAGAGAATGATTTTTATGTCTGGTACCTATTTT
GACTTTCCAAATGTTACAATTTTGAATCTTTCAATCCTCAACTTTTGCTT
TAAATCATGAATATTCTTCTTCTTTTTTCAGGATTGGTCTTTGAAATATG
ATAATGCAGAACCAGTTGCTCCTCGCTTTGAGATCAATGCTCCTGACCTT
TATATTCCATGTAAGTTAAAAATAAAAGCATCCTTGTTTCTTTAAAAGAG
GCCTCTTGTCATGCAGAGTTTGAGCTCTTAATTGAAGAGGTCTTGAATAA
ATGTAATCCGACATCGAAGTATTGATTCTGACCAAAAGTGTGTAAAGACC
TCAACTACAAAGGTGATATTGATTTAAGATAATACTGCTACGACCAAAGT
TATGATAGATGACAATATGTCAAAATGTAGAATATTTTCAAGAGGTGTCT
CAACTAAAAATTAAGAATAAGTCAGCTTGAATTTGCTGCATTTAAATTTT
CCTGTATTATTTCTAGCTATGGCTTTCGTTACATATGTATTGGTTTGCAG
TGTAATACTTGGTACACAGAATAGGTATGACTTTAAAAGGTTACCATTAT
CCCTTAAATTTTAAGGGGGAGGGGGGTTACTAGGGTTGTGAGCTGACGGG
TATGTTCCGCCCCACTTTCAACCCTCGCACCCTTAGCAGGACTAAAAAGG
AGGAAAATAGGAGAAATTTGTGAAATATTTTTAATATCCCCTTATTGGGA
CCAAATTTGACCAATTTAAGATTTTTTACGGGGCAAATAATTCAAAAAAT
TGAAATTTCCCTATTTTTCCGACCCTAAGTGGGACTGAATTTTCTTCTTA
AAAAACACTAAAAATGCTTGAATAAGTGGACCTTGAAGTGTATTTTGTTT
TGTAAAAATAGTTAAAAGTTTCCCTAAAGCCATTTAGACTCATTGTGAGA
GGATTATATTTAAATTTAACAAATACCATCAAGGGTTTTGCTTTGTGTTT
GGTAGGATTGCGAATGAAAAATTAACTCGCGATCTCTAGATTCTAGACCG
GCGAATTCTTAGGAGTGTGTTGAGTGTATTGATTAGCATAAATATGTACT
TGATGCGACGAACAGAACTTATCAAACGGCGAATTGGAATTTTTTTCGAA
TAAGACCCCTGATGGGTGACCATTCATTTCCTTTCATTTAGATTCACTCC
AGAGCAGCTAGGAATGACAGCAAGTTCAGCATTTGTTTGGTTATGTATTG
AATTAATTGTCATCGTAATGATTATGTATTTAATTGGTATCTCTGGTAAT
ATCAAATATTTGGATATACTTTCTTTTTGTGGTTACAAATATGTTGGGTA
GGTAAATTGTTGAATTGAGAACGTTCAAAGTAAAAATTTATATATATGTA
TTCTGAGGTAGCTAATTGTCATTTGTGCGTTTTTCAAAATTCCTTTTTGT
CCACTACTTGAAATTATTGAATTATTGTCACATCGGGAAAAACTACATTA
CTTTGATTCTTTTTTACAGAATGATATTGACATCAGTATGCGGATTACTA
TTCGAAACCACTGGATATTATGCTTCCCTTTTATGGTGTAGTGTGGCTAT
CTCATTTTTCATAGTAAGTATTATTGTTCATATATAATTATTTAAACCTA
GTTATACAGACACACAAACTCTTGAGTTTGTGTCAAAATAGGTGGGGTTT
GTACTAAAATCTCAGACACATAATTTGTAATGAAGAATTTTTTCTCAAAA
GTGCAGAAAACTTTTTTTGCATAAGTTGATACTTTGAATTATGCTACTTA
ATGAATTGGGCNACTACATTACTCGGAAAAACCTTCATAACTCGTGAGGA
CTCCAATTACTCGAACGAGTCTCGTCATTTAAAGAGAGTTTTAGCTTTTT
TCGCTTTTGTACACATTCTATTTCTTTGCTATTTTTTTCACTATCTCGTA
AAGTAAAAGCTTTTTAGATAATTTAACCATGTCAAACGATAGCCCTTGAC
CCAATATGCATTTGTGGTGTAATGTCAGTGGTGGTCAAAGCAAATTTTTC
AGGAAATTAGCAATCCCAGGGCTTGCCCGAAAATTAGCGTTGCTTGTAAA
AAAGATGTGTATTACTCATGGGATTAAAATGTCAGGATTTAACCCATAAA
ATGGAATTATTGTATTGTCTTTGCAGACCTTTCTCAATATTTTGATTCTT
TTTCACAGAATGATATTGACATCAGTATGCGGATTATTATTTGAAGCCAC
TGGATATTATGCTTCCTTATTATGGTGTAGTGTGGCTATCTCATTTTTCA
TAGTAAGTTTTATTGTTCATATATAATTATTTAAACCTAGTTATACAGAC
ACACAAACTCTTGAGTGTGTGTCAAAGTAGGTGGGGTTTGTACTAAAATC
TCAGACACATAAATTTAATTCGATTTAGTTTCATTCACTTTCTTGTTCTC
CACTTAGGCTCGATCACTTCGCCTTGTCATTAATCCTGAGGATCATTCAG
ACAGCGTATCTCGATCAACCAGTGGTAATAAACGACGTCTATACATTCTA
CTCACTGTCTCACTTATTCAACCAGTTTTCATGTACTTTTTAACGAAACA
TTTGATTCATTATACACCACCGAAAATTATGAAAATGTCTGGATAATAAA
AGCAATGGAATCCTTTTTGAGAGAGAAGTTTTTAGTTTTATGTCAAATTG
TGAAATTGTATTTAACAATGGCTTTGGGAAAATCTAGTTCAGCCATAATA
TCGAAATATCTGTTGGAGAAATTGGTATTGGGTTCGAAAACAATCCACGA
ATCATCAGTAGAAAATATCGAAGATTGCGGTTTCAGATAACATCGTTGTC
AGTGAAGACCCGAAGAAGATTCTGACGATTATAACTTGATCATTTTTTTT
AACTGACGATTATAACTTGATCATCTATATATTAATAGCGGTAGTCTGTA
TGTCGTTTTGTCGTCTTTCTTTCTGTCTGTGCTACTTTCGTTTTCGCACG
CAATGTTTTTGTTCTTCCAAA

Coding sequence (CDS) from alignment at scaffold_133:289578..294148-

>TCONS_00047667 ID=TCONS_00047667|Name=TCONS_00047667|organism=Clytia hemisphaerica|type=CDS|length=9774bp|location=Sequence derived from alignment at scaffold_133:289578..294148- (Clytia hemisphaerica)
GCTCGATCACTTCGCCTTGTCATTAATCCTGAGGATCATTCAGACAGCGT
ATCTCGATCAACCAGTGGTAATAAACGACGTCTATACATTCTACTCACTG
TCTCACTTATTCAACCAGTTTTCATGTACTTTTTAACGAAACATTTGATT
CATTATACACCACCGAAAATTATGAAAATGTCTGGATAAAATGATATTGA
CATCAGTATGCGGATTACTATTCGAAACCACTGGATATTATGCTTCCCTT
TTATGGTGTAGTGTGGCTATCTCATTTTTCATAATTCACTCCAGAGCAGC
TAGGAATGACAGCAAGTTCAGCATTTGTTTGGTTATGTATTGAATTAATT
GTCATCGTAATGATTATGTATTTAATTGGTATCTCTGGTAATATCAAATA
TTTGGATATACTTTCTTTTTGTGGTTACAAATATGTTGGCTATGGCTTTC
GTTACATATGTATTGGTTTGCAGTGTAATACTTGGTACACAGAATAGGAT
TGGTCTTTGAAATATGATAATGCAGAACCAGTTGCTCCTCGCTTTGAGAT
CAATGCTCCTGACCTTTATATTCCATCTTGATCATTTCTTGTCAGTTTCA
AAATTGAAGTATTATTTTGCTGTTGACACTACTTACGTCCTCAAGAAATT
AGGATTACTTGTCTTCCCATTCGCACATAAGGAAAGCAGCCACCGCAACA
GCAACAGTTTTACCAACCTTCACAGCAACAAAATTCATATACTCCAGAAC
TATTCGATGATATGTCAGCCTACAACCAACAACCACAACAAACCACACCA
CCAAGTAGTATGATGCAACCCAATCAGCCGATGCAACCAGCTCAAATGAC
ATTCCCAGGACAAGAGCTTCTACAAGATCCAAACATGGCAAACATGGCAA
CTAATATGGCGATGCAATATGGACAGCAGTTTATGCCGGCTGGTAAAGAG
TTTGTTGAAAAGAAGAAGAAGATACAAGTATGCAACAAAGGGGAAATAGA
AGGAACAAAGCTTGTTTTTGCTGTACTTTTTAATCATTGTGCATTCATGT
CAATGACGAATAATCAGTATCTACTCGAACTAAATGGCTCGATCACTTCG
CCTTGTCATTAATCCTGAGGATCATTCAGACAGCGTATCTCGATCAACCA
GTGGTAATAAACGACGTCTATACATTCTACTCACTGTCTCACTTATTCAA
CCAGTTTTCATGTACTTTTTAACGAAACATTTGATTCATTATACACCACC
GAAAATTATGAAAATGTCTGGATAAAATGATATTGACATCAGTATGCGGA
TTACTATTCGAAACCACTGGATATTATGCTTCCCTTTTATGGTGTAGTGT
GGCTATCTCATTTTTCATAATTCACTCCAGAGCAGCTAGGAATGACAGCA
AGTTCAGCATTTGTTTGGTTATGTATTGAATTAATTGTCATCGTAATGAT
TATGTATTTAATTGGTATCTCTGGTAATATCAAATATTTGGATATACTTT
CTTTTTGTGGTTACAAATATGTTGGCTATGGCTTTCGTTACATATGTATT
GGTTTGCAGTGTAATACTTGGTACACAGAATAGGATTGGTCTTTGAAATA
TGATAATGCAGAACCAGTTGCTCCTCGCTTTGAGATCAATGCTCCTGACC
TTTATATTCCATCTTGATCATTTCTTGTCAGTTTCAAAATTGAAGTATTA
TTTTGCTGTTGACACTACTTACGTCCTCAAGAAATTAGGATTACTTGTCT
TCCCATTCGCACATAAGGAAAGCAGCCACCGCAACAGCAACAGTTTTACC
AACCTTCACAGCAACAAAATTCATATACTCCAGAACTATTCGATGATATG
TCAGCCTACAACCAACAACCACAACAAACCACACCACCAAGTAGTATGAT
GCAACCCAATCAGCCGATGCAACCAGCTCAAATGACATTCCCAGGACAAG
AGCTTCTACAAGATCCAAACATGGCAAACATGGCAACTAATATGGCGATG
CAATATGGACAGCAGTTTATGCCGGCTGGTAAAGAGTTTGTTGAAAAGAA
GAAGAAGATACAAGTATGCAACAAAGGGGAAATAGAAGGAACAAAGCTTG
TTTTTGCTGTACTTTTTAATCATTGTGCATTCATGTCAATGACGAATAAT
CAGTATCTACTCGAACTAAATGGCTCGATCACTTCGCCTTGTCATTAATC
CTGAGGATCATTCAGACAGCGTATCTCGATCAACCAGTGGTAATAAACGA
CGTCTATACATTCTACTCACTGTCTCACTTATTCAACCAGTTTTCATGTA
CTTTTTAACGAAACATTTGATTCATTATACACCACCGAAAATTATGAAAA
TGTCTGGATAAAATGATATTGACATCAGTATGCGGATTACTATTCGAAAC
CACTGGATATTATGCTTCCCTTTTATGGTGTAGTGTGGCTATCTCATTTT
TCATAATTCACTCCAGAGCAGCTAGGAATGACAGCAAGTTCAGCATTTGT
TTGGTTATGTATTGAATTAATTGTCATCGTAATGATTATGTATTTAATTG
GTATCTCTGGTAATATCAAATATTTGGATATACTTTCTTTTTGTGGTTAC
AAATATGTTGGCTATGGCTTTCGTTACATATGTATTGGTTTGCAGTGTAA
TACTTGGTACACAGAATAGGATTGGTCTTTGAAATATGATAATGCAGAAC
CAGTTGCTCCTCGCTTTGAGATCAATGCTCCTGACCTTTATATTCCATCT
TGATCATTTCTTGTCAGTTTCAAAATTGAAGTATTATTTTGCTGTTGACA
CTACTTACGTCCTCAAGAAATTAGGATTACTTGTCTTCCCATTCGCACAT
AAGGAAAGCAGCCACCGCAACAGCAACAGTTTTACCAACCTTCACAGCAA
CAAAATTCATATACTCCAGAACTATTCGATGATATGTCAGCCTACAACCA
ACAACCACAACAAACCACACCACCAAGTAGTATGATGCAACCCAATCAGC
CGATGCAACCAGCTCAAATGACATTCCCAGGACAAGAGCTTCTACAAGAT
CCAAACATGGCAAACATGGCAACTAATATGGCGATGCAATATGGACAGCA
GTTTATGCCGGCTGGTAAAGAGTTTGTTGAAAAGAAGAAGAAGATACAAG
TATGCAACAAAGGGGAAATAGAAGGAACAAAGCTTGTTTTTGCTGTACTT
TTTAATCATTGTGCATTCATGTCAATGACGAATAATCAGTATCTACTCGA
ACTAAATGGCTCGATCACTTCGCCTTGTCATTAATCCTGAGGATCATTCA
GACAGCGTATCTCGATCAACCAGTGGTAATAAACGACGTCTATACATTCT
ACTCACTGTCTCACTTATTCAACCAGTTTTCATGTACTTTTTAACGAAAC
ATTTGATTCATTATACACCACCGAAAATTATGAAAATGTCTGGATAAAAT
GATATTGACATCAGTATGCGGATTACTATTCGAAACCACTGGATATTATG
CTTCCCTTTTATGGTGTAGTGTGGCTATCTCATTTTTCATAATTCACTCC
AGAGCAGCTAGGAATGACAGCAAGTTCAGCATTTGTTTGGTTATGTATTG
AATTAATTGTCATCGTAATGATTATGTATTTAATTGGTATCTCTGGTAAT
ATCAAATATTTGGATATACTTTCTTTTTGTGGTTACAAATATGTTGGCTA
TGGCTTTCGTTACATATGTATTGGTTTGCAGTGTAATACTTGGTACACAG
AATAGGATTGGTCTTTGAAATATGATAATGCAGAACCAGTTGCTCCTCGC
TTTGAGATCAATGCTCCTGACCTTTATATTCCATCTTGATCATTTCTTGT
CAGTTTCAAAATTGAAGTATTATTTTGCTGTTGACACTACTTACGTCCTC
AAGAAATTAGGATTACTTGTCTTCCCATTCGCACATAAGGAAAGCAGCCA
CCGCAACAGCAACAGTTTTACCAACCTTCACAGCAACAAAATTCATATAC
TCCAGAACTATTCGATGATATGTCAGCCTACAACCAACAACCACAACAAA
CCACACCACCAAGTAGTATGATGCAACCCAATCAGCCGATGCAACCAGCT
CAAATGACATTCCCAGGACAAGAGCTTCTACAAGATCCAAACATGGCAAA
CATGGCAACTAATATGGCGATGCAATATGGACAGCAGTTTATGCCGGCTG
GTAAAGAGTTTGTTGAAAAGAAGAAGAAGATACAAGTATGCAACAAAGGG
GAAATAGAAGGAACAAAGCTTGTTTTTGCTGTACTTTTTAATCATTGTGC
ATTCATGTCAATGACGAATAATCAGTATCTACTCGAACTAAATGGCTCGA
TCACTTCGCCTTGTCATTAATCCTGAGGATCATTCAGACAGCGTATCTCG
ATCAACCAGTGGTAATAAACGACGTCTATACATTCTACTCACTGTCTCAC
TTATTCAACCAGTTTTCATGTACTTTTTAACGAAACATTTGATTCATTAT
ACACCACCGAAAATTATGAAAATGTCTGGATAAAATGATATTGACATCAG
TATGCGGATTACTATTCGAAACCACTGGATATTATGCTTCCCTTTTATGG
TGTAGTGTGGCTATCTCATTTTTCATAATTCACTCCAGAGCAGCTAGGAA
TGACAGCAAGTTCAGCATTTGTTTGGTTATGTATTGAATTAATTGTCATC
GTAATGATTATGTATTTAATTGGTATCTCTGGTAATATCAAATATTTGGA
TATACTTTCTTTTTGTGGTTACAAATATGTTGGCTATGGCTTTCGTTACA
TATGTATTGGTTTGCAGTGTAATACTTGGTACACAGAATAGGATTGGTCT
TTGAAATATGATAATGCAGAACCAGTTGCTCCTCGCTTTGAGATCAATGC
TCCTGACCTTTATATTCCATCTTGATCATTTCTTGTCAGTTTCAAAATTG
AAGTATTATTTTGCTGTTGACACTACTTACGTCCTCAAGAAATTAGGATT
ACTTGTCTTCCCATTCGCACATAAGGAAAGCAGCCACCGCAACAGCAACA
GTTTTACCAACCTTCACAGCAACAAAATTCATATACTCCAGAACTATTCG
ATGATATGTCAGCCTACAACCAACAACCACAACAAACCACACCACCAAGT
AGTATGATGCAACCCAATCAGCCGATGCAACCAGCTCAAATGACATTCCC
AGGACAAGAGCTTCTACAAGATCCAAACATGGCAAACATGGCAACTAATA
TGGCGATGCAATATGGACAGCAGTTTATGCCGGCTGGTAAAGAGTTTGTT
GAAAAGAAGAAGAAGATACAAGTATGCAACAAAGGGGAAATAGAAGGAAC
AAAGCTTGTTTTTGCTGTACTTTTTAATCATTGTGCATTCATGTCAATGA
CGAATAATCAGTATCTACTCGAACTAAATGGCTCGATCACTTCGCCTTGT
CATTAATCCTGAGGATCATTCAGACAGCGTATCTCGATCAACCAGTGGTA
ATAAACGACGTCTATACATTCTACTCACTGTCTCACTTATTCAACCAGTT
TTCATGTACTTTTTAACGAAACATTTGATTCATTATACACCACCGAAAAT
TATGAAAATGTCTGGATAAAATGATATTGACATCAGTATGCGGATTACTA
TTCGAAACCACTGGATATTATGCTTCCCTTTTATGGTGTAGTGTGGCTAT
CTCATTTTTCATAATTCACTCCAGAGCAGCTAGGAATGACAGCAAGTTCA
GCATTTGTTTGGTTATGTATTGAATTAATTGTCATCGTAATGATTATGTA
TTTAATTGGTATCTCTGGTAATATCAAATATTTGGATATACTTTCTTTTT
GTGGTTACAAATATGTTGGCTATGGCTTTCGTTACATATGTATTGGTTTG
CAGTGTAATACTTGGTACACAGAATAGGATTGGTCTTTGAAATATGATAA
TGCAGAACCAGTTGCTCCTCGCTTTGAGATCAATGCTCCTGACCTTTATA
TTCCATCTTGATCATTTCTTGTCAGTTTCAAAATTGAAGTATTATTTTGC
TGTTGACACTACTTACGTCCTCAAGAAATTAGGATTACTTGTCTTCCCAT
TCGCACATAAGGAAAGCAGCCACCGCAACAGCAACAGTTTTACCAACCTT
CACAGCAACAAAATTCATATACTCCAGAACTATTCGATGATATGTCAGCC
TACAACCAACAACCACAACAAACCACACCACCAAGTAGTATGATGCAACC
CAATCAGCCGATGCAACCAGCTCAAATGACATTCCCAGGACAAGAGCTTC
TACAAGATCCAAACATGGCAAACATGGCAACTAATATGGCGATGCAATAT
GGACAGCAGTTTATGCCGGCTGGTAAAGAGTTTGTTGAAAAGAAGAAGAA
GATACAAGTATGCAACAAAGGGGAAATAGAAGGAACAAAGCTTGTTTTTG
CTGTACTTTTTAATCATTGTGCATTCATGTCAATGACGAATAATCAGTAT
CTACTCGAACTAAATGGCTCGATCACTTCGCCTTGTCATTAATCCTGAGG
ATCATTCAGACAGCGTATCTCGATCAACCAGTGGTAATAAACGACGTCTA
TACATTCTACTCACTGTCTCACTTATTCAACCAGTTTTCATGTACTTTTT
AACGAAACATTTGATTCATTATACACCACCGAAAATTATGAAAATGTCTG
GATAAAATGATATTGACATCAGTATGCGGATTACTATTCGAAACCACTGG
ATATTATGCTTCCCTTTTATGGTGTAGTGTGGCTATCTCATTTTTCATAA
TTCACTCCAGAGCAGCTAGGAATGACAGCAAGTTCAGCATTTGTTTGGTT
ATGTATTGAATTAATTGTCATCGTAATGATTATGTATTTAATTGGTATCT
CTGGTAATATCAAATATTTGGATATACTTTCTTTTTGTGGTTACAAATAT
GTTGGCTATGGCTTTCGTTACATATGTATTGGTTTGCAGTGTAATACTTG
GTACACAGAATAGGATTGGTCTTTGAAATATGATAATGCAGAACCAGTTG
CTCCTCGCTTTGAGATCAATGCTCCTGACCTTTATATTCCATCTTGATCA
TTTCTTGTCAGTTTCAAAATTGAAGTATTATTTTGCTGTTGACACTACTT
ACGTCCTCAAGAAATTAGGATTACTTGTCTTCCCATTCGCACATAAGGAA
AGCAGCCACCGCAACAGCAACAGTTTTACCAACCTTCACAGCAACAAAAT
TCATATACTCCAGAACTATTCGATGATATGTCAGCCTACAACCAACAACC
ACAACAAACCACACCACCAAGTAGTATGATGCAACCCAATCAGCCGATGC
AACCAGCTCAAATGACATTCCCAGGACAAGAGCTTCTACAAGATCCAAAC
ATGGCAAACATGGCAACTAATATGGCGATGCAATATGGACAGCAGTTTAT
GCCGGCTGGTAAAGAGTTTGTTGAAAAGAAGAAGAAGATACAAGTATGCA
ACAAAGGGGAAATAGAAGGAACAAAGCTTGTTTTTGCTGTACTTTTTAAT
CATTGTGCATTCATGTCAATGACGAATAATCAGTATCTACTCGAACTAAA
TGGCTCGATCACTTCGCCTTGTCATTAATCCTGAGGATCATTCAGACAGC
GTATCTCGATCAACCAGTGGTAATAAACGACGTCTATACATTCTACTCAC
TGTCTCACTTATTCAACCAGTTTTCATGTACTTTTTAACGAAACATTTGA
TTCATTATACACCACCGAAAATTATGAAAATGTCTGGATAAAATGATATT
GACATCAGTATGCGGATTACTATTCGAAACCACTGGATATTATGCTTCCC
TTTTATGGTGTAGTGTGGCTATCTCATTTTTCATAATTCACTCCAGAGCA
GCTAGGAATGACAGCAAGTTCAGCATTTGTTTGGTTATGTATTGAATTAA
TTGTCATCGTAATGATTATGTATTTAATTGGTATCTCTGGTAATATCAAA
TATTTGGATATACTTTCTTTTTGTGGTTACAAATATGTTGGCTATGGCTT
TCGTTACATATGTATTGGTTTGCAGTGTAATACTTGGTACACAGAATAGG
ATTGGTCTTTGAAATATGATAATGCAGAACCAGTTGCTCCTCGCTTTGAG
ATCAATGCTCCTGACCTTTATATTCCATCTTGATCATTTCTTGTCAGTTT
CAAAATTGAAGTATTATTTTGCTGTTGACACTACTTACGTCCTCAAGAAA
TTAGGATTACTTGTCTTCCCATTCGCACATAAGGAAAGCAGCCACCGCAA
CAGCAACAGTTTTACCAACCTTCACAGCAACAAAATTCATATACTCCAGA
ACTATTCGATGATATGTCAGCCTACAACCAACAACCACAACAAACCACAC
CACCAAGTAGTATGATGCAACCCAATCAGCCGATGCAACCAGCTCAAATG
ACATTCCCAGGACAAGAGCTTCTACAAGATCCAAACATGGCAAACATGGC
AACTAATATGGCGATGCAATATGGACAGCAGTTTATGCCGGCTGGTAAAG
AGTTTGTTGAAAAGAAGAAGAAGATACAAGTATGCAACAAAGGGGAAATA
GAAGGAACAAAGCTTGTTTTTGCTGTACTTTTTAATCATTGTGCATTCAT
GTCAATGACGAATAATCAGTATCTACTCGAACTAAATGGCTCGATCACTT
CGCCTTGTCATTAATCCTGAGGATCATTCAGACAGCGTATCTCGATCAAC
CAGTGGTAATAAACGACGTCTATACATTCTACTCACTGTCTCACTTATTC
AACCAGTTTTCATGTACTTTTTAACGAAACATTTGATTCATTATACACCA
CCGAAAATTATGAAAATGTCTGGATAAAATGATATTGACATCAGTATGCG
GATTACTATTCGAAACCACTGGATATTATGCTTCCCTTTTATGGTGTAGT
GTGGCTATCTCATTTTTCATAATTCACTCCAGAGCAGCTAGGAATGACAG
CAAGTTCAGCATTTGTTTGGTTATGTATTGAATTAATTGTCATCGTAATG
ATTATGTATTTAATTGGTATCTCTGGTAATATCAAATATTTGGATATACT
TTCTTTTTGTGGTTACAAATATGTTGGCTATGGCTTTCGTTACATATGTA
TTGGTTTGCAGTGTAATACTTGGTACACAGAATAGGATTGGTCTTTGAAA
TATGATAATGCAGAACCAGTTGCTCCTCGCTTTGAGATCAATGCTCCTGA
CCTTTATATTCCATCTTGATCATTTCTTGTCAGTTTCAAAATTGAAGTAT
TATTTTGCTGTTGACACTACTTACGTCCTCAAGAAATTAGGATTACTTGT
CTTCCCATTCGCACATAAGGAAAGCAGCCACCGCAACAGCAACAGTTTTA
CCAACCTTCACAGCAACAAAATTCATATACTCCAGAACTATTCGATGATA
TGTCAGCCTACAACCAACAACCACAACAAACCACACCACCAAGTAGTATG
ATGCAACCCAATCAGCCGATGCAACCAGCTCAAATGACATTCCCAGGACA
AGAGCTTCTACAAGATCCAAACATGGCAAACATGGCAACTAATATGGCGA
TGCAATATGGACAGCAGTTTATGCCGGCTGGTAAAGAGTTTGTTGAAAAG
AAGAAGAAGATACAAGTATGCAACAAAGGGGAAATAGAAGGAACAAAGCT
TGTTTTTGCTGTACTTTTTAATCATTGTGCATTCATGTCAATGACGAATA
ATCAGTATCTACTCGAACTAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030354XLOC_030354Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047667-exon-scaffold_133-1575043694:294072..294148TCONS_00047667-exon-scaffold_133-1575043694:294072..294148Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1575043694:293863..293907TCONS_00047667-exon-scaffold_133-1575043694:293863..293907Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1575043694:293306..293589TCONS_00047667-exon-scaffold_133-1575043694:293306..293589Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1575043694:292862..292966TCONS_00047667-exon-scaffold_133-1575043694:292862..292966Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1575043694:292389..292467TCONS_00047667-exon-scaffold_133-1575043694:292389..292467Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1575043694:292025..292082TCONS_00047667-exon-scaffold_133-1575043694:292025..292082Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1575043694:291252..291407TCONS_00047667-exon-scaffold_133-1575043694:291252..291407Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1575043694:290986..291079TCONS_00047667-exon-scaffold_133-1575043694:290986..291079Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1575043694:289578..290141TCONS_00047667-exon-scaffold_133-1575043694:289578..290141Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1510915933:294072..294148TCONS_00047667-exon-scaffold_133-1510915933:294072..294148Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1510915933:293863..293907TCONS_00047667-exon-scaffold_133-1510915933:293863..293907Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1510915933:293306..293589TCONS_00047667-exon-scaffold_133-1510915933:293306..293589Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1510915933:292862..292966TCONS_00047667-exon-scaffold_133-1510915933:292862..292966Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1510915933:292389..292467TCONS_00047667-exon-scaffold_133-1510915933:292389..292467Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1510915933:292025..292082TCONS_00047667-exon-scaffold_133-1510915933:292025..292082Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1510915933:291252..291407TCONS_00047667-exon-scaffold_133-1510915933:291252..291407Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1510915933:290986..291079TCONS_00047667-exon-scaffold_133-1510915933:290986..291079Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1510915933:289578..290141TCONS_00047667-exon-scaffold_133-1510915933:289578..290141Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1491911889:294072..294148TCONS_00047667-exon-scaffold_133-1491911889:294072..294148Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1491911889:293863..293907TCONS_00047667-exon-scaffold_133-1491911889:293863..293907Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1491911889:293306..293589TCONS_00047667-exon-scaffold_133-1491911889:293306..293589Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1491911889:292862..292966TCONS_00047667-exon-scaffold_133-1491911889:292862..292966Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1491911889:292389..292467TCONS_00047667-exon-scaffold_133-1491911889:292389..292467Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1491911889:292025..292082TCONS_00047667-exon-scaffold_133-1491911889:292025..292082Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1491911889:291252..291407TCONS_00047667-exon-scaffold_133-1491911889:291252..291407Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1491911889:290986..291079TCONS_00047667-exon-scaffold_133-1491911889:290986..291079Clytia hemisphaericaexon
TCONS_00047667-exon-scaffold_133-1491911889:289578..290141TCONS_00047667-exon-scaffold_133-1491911889:289578..290141Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047667-proteinTCONS_00047667-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:289578..294148 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.44164e-06	7.00384e-05	0	0	0	0	0	0	4.15039	0	0	0	0	0	0	0	0	2.68403e-08	0	1.28266e-08	5.34552e-06	5.54089e-09	2.51183e-07	0	0	0	0	0	1.49265e-07	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005578Yif1_fam
Blast
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BLAST of TCONS_00047667 vs. Swiss-Prot (Human)
Match: YIF1B (Protein YIF1B OS=Homo sapiens GN=YIF1B PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 2.885e-79
Identity = 115/231 (49.78%), Postives = 164/231 (71.00%), Query Frame = 2 
Query:  359 YGQQFMPAGKEFVEKKLDHFLSVSKLKYYFAVDTTYVLKKLGLLVFPFAHKDWSLKYDNAEPVAPRFEINAPDLYIPSMAFVTYVLVCSVILGTQNRFTPEQLGMTASSAFVWLCIELIVIVMIMYLIGISGNIKYLDILSFCGYKYVGMILTSVCGLLFETTGYYASLLWCSVAISFFIARSLRLVINPEDHSDSVSRSTSGNKRRLYILLTVSLIQPVFMYFLTKHLIH 1051
            YG      GKE V+K +D F+ ++KLKYYFAVDT YV +KLGLL FP+ H+DW ++Y    PVAPRF++NAPDLYIP+MAF+TYVLV  + LGTQ+RF+P+ LG+ ASSA  WL +E++ I++ +YL+ ++ ++  +D+++F GYKYVGMI   + GLLF   GYY  L WC VAI  F+ R+LRL I  +  ++ V    + N+ R+Y+ + V+  QP+ MY+LT HL+ 
Sbjct:   84 YGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFMIRTLRLKILADAAAEGVPVRGARNQLRMYLTMAVAAAQPMLMYWLTFHLVR 314
The following BLAST results are available for this feature:
BLAST of TCONS_00047667 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
YIF1B2.885e-7949.78Protein YIF1B OS=Homo sapiens GN=YIF1B PE=1 SV=1[more]
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