TCONS_00047676 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047676
Unique NameTCONS_00047676
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length621

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047676 ID=TCONS_00047676|Name=TCONS_00047676|organism=Clytia hemisphaerica|type=transcript|length=621bp
AAAGTTGAGAACAACTCAAGATAAACTTCAGTATATTTGGTAAATAAAAC
CACAATACAGCACCAAAAACTGTTTTTCATACAAGCACACAAAATGTCTC
ACATTGTTGATTTGGATGAACGAGAGttaTTGGAAAGTGAAAAACACGAA
gttgatgaaaaatttaaattattttttgacaaaattgcaGGAGAAGACGG
AGAGATTGATTCATTCGAGCTACAAGAATTGTTCAACGCAGCTTTTTCAA
AAGAATTGAATGGAAAATCTTTCAGTTTGGAAGCTTGTCGAAGCATGTCA
GCCATGACTGACCGCGGACAACGCAACGGAACCATTGATTATGAAGAATT
TCAACATCTCTGGTTACACTTACGAAGATATAAAGAATCATTTTCTAAGC
AGGACGTAGATAAAAGTGGAGACATGTGTATAGAGGAGTTAGGGAAAGCT
CTTTCAAGAGTTGGTTTTGATTTGAGTGACCGGGTATTGAACATTTGCTC
AGCACGTTTCGCGAACCGTGACGGGAAAGTCGACTTAGATGATTTCATAC
AGATTTGTTGTCGTGTGAAGACGTCATTTGaaGCCTTCATCAGCCACAGT
GGAAAACCTTTATCCATAGAT
Run BLAST on NCBI

protein sequence of TCONS_00047676-protein

>TCONS_00047676-protein ID=TCONS_00047676-protein|Name=TCONS_00047676-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MSHIVDLDERELLESEKHEVDEKFKLFFDKIAGEDGEIDSFELQELFNAA
FSKELNGKSFSLEACRSMSAMTDRGQRNGTIDYEEFQHLWLHLRRYKESF
SKQDVDKSGDMCIEELGKALSRVGFDLSDRVLNICSARFANRDGKVDLDD
FIQICCRVKTSFEAFISHSGKPLSID
Run BLAST on NCBI

transcript from alignment at scaffold_133:407102..409388-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047676 ID=TCONS_00047676|Name=TCONS_00047676|organism=Clytia hemisphaerica|type=transcript|length=2287bp|location=Sequence derived from alignment at scaffold_133:407102..409388- (Clytia hemisphaerica)
AAAGTTGAGAACAACTCAAGATAAACTTCAGTATATTTGGTAAATAAAAC
CACAATACAGCACCAAAAACTGTTTTTCATACAAGCACACAAAATGTCTC
ACATTGTTGATTTGGATGAACGAGAGGTAAGTACCAAACACTACCAATTT
TAACACCCCTGTGTCAACAGACCCCTACCAGCTGGAAGATTTGGCTAAAT
TCCCCCTAGCGGGGAAAATACCTTGAAATTTTCGCCTCACTGCACAGGAA
AATTCACTTTGTTTTCATCCCAAAACCATCCCACTAGATTTTTTACCTGG
GACCAATAGAATTTCTATCTTTATTGGGATTTTGATATAAATTTTTTCCC
ATGTGCGTGGTAAGAAATTCCACCGGATTGTGAGACAGGGGTGTATCTTG
AGACAACTACCAATTTTGCAAGACATGCTAAACAGTCCATCGATAGAGTC
ATAACTATTGATTAAACTGTGGAAAGTCAAAATCTCAAAAATTAACTTTA
GCTTTTTAATGAAAAATGCATCTGAAAATATTTTCTAAAATTCAAGTGTA
TTGACTAAAAGAAAGTATTGCTGGGATATTTAAGAATCTCTTTATGGTTT
CAATATTTTCAATGGGGTCAATTCCATCAACAACATCATTCTAGTGGAGT
GATTGACGGAGCTGTCCTGACCCTTTTTACACTGGCCAGCATTGAGAACT
GTTAGTCTTAAAAATCTCGAAGAGGTCACCCTGGACACAAATGATAAATA
GTATTTAAATTTTTNGAGAACTGTTAGTCTTAAAAATCTCGAAGAGGTCA
CCCTGGAAACAAATGATAAATAGTATTTAATTTCTTTTTCAGTTATTGGA
AAGTGAAAAACACGAAGTTGATGAAAAATTTAAATTATTTTTTGACAAAA
TTGCAGGAGAAGTAAGTTTACTTTTTATAAAGATTCCTTAAAAAAAAAAA
ACTTCGATAACAATAGCGAGAAAAATTGCATGAAAACTTTAATCTGCTTT
TTGGTCAGTGGGTTCTTTATGGAAGGATTTAGAAGAATATGTGATAACGT
ATACTCAGTTAATTTCGCCTTTTCAGGACGGAGAGATTGATTCATTCGAG
CTACAAGAATTGTTCAACGCAGCTTTTTCAAAAGGTAAGGTGTTATTGAA
TAGTCCCAAACATGCTTAAATTTTCAATATATTGTACTTTGATTGGTCCG
ATACTAAATCCAAAATATACAGTAGCCAGTTTGAATAGAAGACTTTTATT
AGCCCGTTGAAAACCTTGAAGTATAAAGCTGGTTGCTTTTCACACCCTAC
GTACCAGTTATCGTGCAAGTTTGAGTGAAATTCGAGAAATATTTTACGGG
TTCCGAGTTTTTTCTGTAACTGGAATAAAGTAACGGAAAAATACATCGGA
AAAAAACGAAAAGAGTAAAACATAGAACATGTGAGCGTGGTTGTGAAAAA
GCAACTTTGAAGCAGTACATACATGAAAATTGAAACCTGACTTACTAAAT
TCTCTCCTTAGAATTGAATGGAAAATCTTTCAGTTTGGAAGCTTGTCGAA
GCATGTCAGCCATGACTGACCGCGGACAACGCAACGGAACCATTGATTAT
GAAGAATTTCAACATCTCTGGTTACACTTACGAAGATATAAAGAATCATT
TTCTAAGCAGGACGTAGATAAAAGTGGAGACATGTGTATAGAGGAGTTAG
GGAAAGCTCTTTCAAGAGTTGGTTTTGATTTGAGTGACCGGGTATTGAAC
ATTTGCTCAGCACGTTTCGCGAACCGTGACGGGAAAGTCGACTTAGATGA
TTTCATACAGATTTGTTGTCGTGTGAAGACGTCATTTGGTGAGTTTTTTA
TACCACATTTTTTTTCCTTTTTTTTGGCTTTTCTAGAAAAAACTACAGTA
GTTCATTGAGATTGGAAGAGTACTATTATTTTAAATGATCTGGCATCTAG
ATTAAGATGGACGACATGAGCCCTGGACATTTCGATTTTTCACCCCCTGG
ATACACTTGTAATACCCCTGGCATCAAAACGACACATAGGCAATAAAATT
GATCGTTTAGACATACTCAGCCAATGGTCATGTTTTTCATTGATACCCTT
GTTCAATACAAACCCTATCAACGTTTTTTTTCTCAGGAAAACACCTAAAT
TATTCAACTCCAACGCAATATTTATAGATATACAAGTCGAAAATATTCAA
GAAAGTGAGATTATTTTAAAGAAATTCTTCTTCTTTTTTTTTGCAGAAGC
CTTCATCAGCCACAGTGGAAAACCTTTATCCATAGAT

Coding sequence (CDS) from alignment at scaffold_133:407102..409388-

>TCONS_00047676 ID=TCONS_00047676|Name=TCONS_00047676|organism=Clytia hemisphaerica|type=CDS|length=2640bp|location=Sequence derived from alignment at scaffold_133:407102..409388- (Clytia hemisphaerica)
AAGCCTTCATCAGCCACAGTGGAAAACCTTTATCCATAGATAATTGAATG
GAAAATCTTTCAGTTTGGAAGCTTGTCGAAGCATGTCAGCCATGACTGAC
CGCGGACAACGCAACGGAACCATTGATTATGAAGAATTTCAACATCTCTG
GTTACACTTACGAAGATATAAAGAATCATTTTCTAAGCAGGACGTAGATA
AAAGTGGAGACATGTGTATAGAGGAGTTAGGGAAAGCTCTTTCAAGAGTT
GGTTTTGATTTGAGTGACCGGGTATTGAACATTTGCTCAGCACGTTTCGC
GAACCGTGACGGGAAAGTCGACTTAGATGATTTCATACAGATTTGTTGTC
GTGTGAAGACGTCATTTGGACGGAGAGATTGATTCATTCGAGCTACAAGA
ATTGTTCAACGCAGCTTTTTCAAAAGTTATTGGAAAGTGAAAAACACGAA
GTTGATGAAAAATTTAAATTATTTTTTGACAAAATTGCAGGAGAAATGTC
TCACATTGTTGATTTGGATGAACGAGAGAAGCCTTCATCAGCCACAGTGG
AAAACCTTTATCCATAGATAATTGAATGGAAAATCTTTCAGTTTGGAAGC
TTGTCGAAGCATGTCAGCCATGACTGACCGCGGACAACGCAACGGAACCA
TTGATTATGAAGAATTTCAACATCTCTGGTTACACTTACGAAGATATAAA
GAATCATTTTCTAAGCAGGACGTAGATAAAAGTGGAGACATGTGTATAGA
GGAGTTAGGGAAAGCTCTTTCAAGAGTTGGTTTTGATTTGAGTGACCGGG
TATTGAACATTTGCTCAGCACGTTTCGCGAACCGTGACGGGAAAGTCGAC
TTAGATGATTTCATACAGATTTGTTGTCGTGTGAAGACGTCATTTGGACG
GAGAGATTGATTCATTCGAGCTACAAGAATTGTTCAACGCAGCTTTTTCA
AAAGTTATTGGAAAGTGAAAAACACGAAGTTGATGAAAAATTTAAATTAT
TTTTTGACAAAATTGCAGGAGAAATGTCTCACATTGTTGATTTGGATGAA
CGAGAGAAGCCTTCATCAGCCACAGTGGAAAACCTTTATCCATAGATAAT
TGAATGGAAAATCTTTCAGTTTGGAAGCTTGTCGAAGCATGTCAGCCATG
ACTGACCGCGGACAACGCAACGGAACCATTGATTATGAAGAATTTCAACA
TCTCTGGTTACACTTACGAAGATATAAAGAATCATTTTCTAAGCAGGACG
TAGATAAAAGTGGAGACATGTGTATAGAGGAGTTAGGGAAAGCTCTTTCA
AGAGTTGGTTTTGATTTGAGTGACCGGGTATTGAACATTTGCTCAGCACG
TTTCGCGAACCGTGACGGGAAAGTCGACTTAGATGATTTCATACAGATTT
GTTGTCGTGTGAAGACGTCATTTGGACGGAGAGATTGATTCATTCGAGCT
ACAAGAATTGTTCAACGCAGCTTTTTCAAAAGTTATTGGAAAGTGAAAAA
CACGAAGTTGATGAAAAATTTAAATTATTTTTTGACAAAATTGCAGGAGA
AATGTCTCACATTGTTGATTTGGATGAACGAGAGAAGCCTTCATCAGCCA
CAGTGGAAAACCTTTATCCATAGATAATTGAATGGAAAATCTTTCAGTTT
GGAAGCTTGTCGAAGCATGTCAGCCATGACTGACCGCGGACAACGCAACG
GAACCATTGATTATGAAGAATTTCAACATCTCTGGTTACACTTACGAAGA
TATAAAGAATCATTTTCTAAGCAGGACGTAGATAAAAGTGGAGACATGTG
TATAGAGGAGTTAGGGAAAGCTCTTTCAAGAGTTGGTTTTGATTTGAGTG
ACCGGGTATTGAACATTTGCTCAGCACGTTTCGCGAACCGTGACGGGAAA
GTCGACTTAGATGATTTCATACAGATTTGTTGTCGTGTGAAGACGTCATT
TGGACGGAGAGATTGATTCATTCGAGCTACAAGAATTGTTCAACGCAGCT
TTTTCAAAAGTTATTGGAAAGTGAAAAACACGAAGTTGATGAAAAATTTA
AATTATTTTTTGACAAAATTGCAGGAGAAATGTCTCACATTGTTGATTTG
GATGAACGAGAGAAGCCTTCATCAGCCACAGTGGAAAACCTTTATCCATA
GATAATTGAATGGAAAATCTTTCAGTTTGGAAGCTTGTCGAAGCATGTCA
GCCATGACTGACCGCGGACAACGCAACGGAACCATTGATTATGAAGAATT
TCAACATCTCTGGTTACACTTACGAAGATATAAAGAATCATTTTCTAAGC
AGGACGTAGATAAAAGTGGAGACATGTGTATAGAGGAGTTAGGGAAAGCT
CTTTCAAGAGTTGGTTTTGATTTGAGTGACCGGGTATTGAACATTTGCTC
AGCACGTTTCGCGAACCGTGACGGGAAAGTCGACTTAGATGATTTCATAC
AGATTTGTTGTCGTGTGAAGACGTCATTTGGACGGAGAGATTGATTCATT
CGAGCTACAAGAATTGTTCAACGCAGCTTTTTCAAAAGTTATTGGAAAGT
GAAAAACACGAAGTTGATGAAAAATTTAAATTATTTTTTGACAAAATTGC
AGGAGAAATGTCTCACATTGTTGATTTGGATGAACGAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030359XLOC_030359Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047676-proteinTCONS_00047676-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047676-exon-scaffold_133-1575043694:409263..409388TCONS_00047676-exon-scaffold_133-1575043694:409263..409388Clytia hemisphaericaexon
TCONS_00047676-exon-scaffold_133-1575043694:408478..408546TCONS_00047676-exon-scaffold_133-1575043694:408478..408546Clytia hemisphaericaexon
TCONS_00047676-exon-scaffold_133-1575043694:408255..408312TCONS_00047676-exon-scaffold_133-1575043694:408255..408312Clytia hemisphaericaexon
TCONS_00047676-exon-scaffold_133-1575043694:407551..407877TCONS_00047676-exon-scaffold_133-1575043694:407551..407877Clytia hemisphaericaexon
TCONS_00047676-exon-scaffold_133-1575043694:407102..407142TCONS_00047676-exon-scaffold_133-1575043694:407102..407142Clytia hemisphaericaexon
TCONS_00047676-exon-scaffold_133-1510915933:409263..409388TCONS_00047676-exon-scaffold_133-1510915933:409263..409388Clytia hemisphaericaexon
TCONS_00047676-exon-scaffold_133-1510915933:408478..408546TCONS_00047676-exon-scaffold_133-1510915933:408478..408546Clytia hemisphaericaexon
TCONS_00047676-exon-scaffold_133-1510915933:408255..408312TCONS_00047676-exon-scaffold_133-1510915933:408255..408312Clytia hemisphaericaexon
TCONS_00047676-exon-scaffold_133-1510915933:407551..407877TCONS_00047676-exon-scaffold_133-1510915933:407551..407877Clytia hemisphaericaexon
TCONS_00047676-exon-scaffold_133-1510915933:407102..407142TCONS_00047676-exon-scaffold_133-1510915933:407102..407142Clytia hemisphaericaexon
TCONS_00047676-exon-scaffold_133-1491911889:409263..409388TCONS_00047676-exon-scaffold_133-1491911889:409263..409388Clytia hemisphaericaexon
TCONS_00047676-exon-scaffold_133-1491911889:408478..408546TCONS_00047676-exon-scaffold_133-1491911889:408478..408546Clytia hemisphaericaexon
TCONS_00047676-exon-scaffold_133-1491911889:408255..408312TCONS_00047676-exon-scaffold_133-1491911889:408255..408312Clytia hemisphaericaexon
TCONS_00047676-exon-scaffold_133-1491911889:407551..407877TCONS_00047676-exon-scaffold_133-1491911889:407551..407877Clytia hemisphaericaexon
TCONS_00047676-exon-scaffold_133-1491911889:407102..407142TCONS_00047676-exon-scaffold_133-1491911889:407102..407142Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:407102..409388 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.344444	0.167944	0.487497	0.572327	0.929004	0.91764	0.221419	0.103645	0.507949	0.0898824	0	0.114699	0.171809	0.11895	0.0977934	0.104947	0.775719	1.65643	0.274614	0.0957878	7.07685	3.77672	1.87593	4.93695	0.554722	2.55789	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00047676 vs. Swiss-Prot (Human)
Match: CAN1 (Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.484e-25
Identity = 63/162 (38.89%), Postives = 90/162 (55.56%), Query Frame = 1 
Query:  109 DLDERELLESEKHEVDEKFKLFFDKIAGEDGEIDSFELQELFNAAFSK--ELNGKSFSLEACRSMSAMTDRGQRNGTIDYEEFQHLWLHLRRYKESFSKQDVDKSGDMCIEELGKALSRVGFDLSDRVLNICSARFANRDGKVDLDDFIQICCRVKTSFEAF 588
            +L + ++L  E  E+DE FK  F ++AGED EI   EL+ + N   SK  +L  K FSLE+CRSM  + DR   NG +   EF  LW  +R Y   F K D+DKSG M   E+  A+   GF L+ ++  +   R++  D  VD D+F+    R++T F  F
Sbjct:  531 NLPDEQVLSEE--EIDENFKALFRQLAGEDMEISVKELRTILNRIISKHKDLRTKGFSLESCRSMVNLMDR-DGNGKLGLVEFNILWNRIRNYLSIFRKFDLDKSGSMSAYEMRMAIESAGFKLNKKLYELIITRYSEPDLAVDFDNFVCCLVRLETMFRFF 689
The following BLAST results are available for this feature:
BLAST of TCONS_00047676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAN11.484e-2538.89Calpain-1 catalytic subunit OS=Homo sapiens GN=CAP... [more]
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