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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047678 ID=TCONS_00047678|Name=TCONS_00047678|organism=Clytia hemisphaerica|type=transcript|length=4337bpRun BLAST on NCBI protein sequence of TCONS_00047678-protein >TCONS_00047678-protein ID=TCONS_00047678-protein|Name=TCONS_00047678-protein|organism=Clytia hemisphaerica|type=polypeptide|length=727bp MNGSLSFTGVMKLRIYEALGLEETKVRSSVITSIGVTSIDPYLQVNVDDERun BLAST on NCBI transcript from alignment at scaffold_133:430262..451563- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047678 ID=TCONS_00047678|Name=TCONS_00047678|organism=Clytia hemisphaerica|type=transcript|length=21302bp|location=Sequence derived from alignment at scaffold_133:430262..451563- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_133:430262..451563- >TCONS_00047678 ID=TCONS_00047678|Name=TCONS_00047678|organism=Clytia hemisphaerica|type=CDS|length=34944bp|location=Sequence derived from alignment at scaffold_133:430262..451563- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047678 vs. Swiss-Prot (Human)
Match: KPCE (Protein kinase C epsilon type OS=Homo sapiens GN=PRKCE PE=1 SV=1) HSP 1 Score: 746.888 bits (1927), Expect = 0.000e+0 Identity = 383/739 (51.83%), Postives = 507/739 (68.61%), Query Frame = 1
Query: 277 FTGVMKLRIYEALGLEET--KVRXXXXXXXXXXXXDPYLQVNVDDENIYQTQKQVNTFSPEWNEDFQTNLKDAKVINFTVFHTSIVGGGAFVSNSAIPLQEIIDEGQSDL--WIKLEPAGKLHVFIELKPGQVDVNHSKIEDKARHFRERESSYLKKXXXXXXXXXXXXXXSGHKFMATYLRQFHFCSHCKEFIWGVFSKQGYQCQVCQSVTHKKCHQFVVSKCPGVQAENQNSSKEKDEPRFSINIPHRFQVHNYKRPTFCEHCGSLLYGLFRQGMQCQACQRNVHKRCQGNVPNDCGVDAKKMAEVIKKEIDMTPDEXXXXXXXXXXXXXXXPTKKLTSQTSKDEK-----------------ITNNHNTTQNGETSNTNDTLEINPYLPTLPHSPGTKRHFFSDD--RYTKDSFTYLKVIGKGSFGKVMLAEKKGTSELYAIKILKKMTIIQDDDVECVMTEKRVLTIAGQHPYLTSLHSCFQSDDRLFFVMEYVSGGDLMFQIQKARKFDEQRSRFYAAEITLALQFLHKKGVIYRDLKLDNVLLDCGGHVKLADFGMCKDNMLQNQYTSTFCGTPDYIAPEIVNEQDYAESVDWWALGVLMYEMMAGQPPFEADNEDELFQCILHSDVLYPVWLSREAISILKGFLTKNYEKRLGCVPGI-GEVAINKHPFFASIDWRKLEHRQVAPPFQPQIRSRTDVANFDTDFTRENPCLTPTEKDVVNNINQDEFSGFSY 2421
F G++K++I EA+ L+ T +R +V +DPY+ +NVDD I QT + T SP W+++F T++ + + I VFH + +G FV+N I +E++ G WI LEP G+++V I+L + +++ R FRER ++ R R+ AVRRRVH V+GHKFMATYLRQ +CSHC++FIWGV KQGYQCQVC V HK+CH+ +++KC G++ Q + + RFS+N+PH+F +HNYK PTFC+HCGSLL+GL RQG+QC+ C+ NVH+RC+ NV +CGVDA+ +A+V+ ++ +TPD++ ++ L G+ + + S +S E+ + NN + + +P + SPG R D F ++KV+GKGSFGKVMLAE KG E+YA+K+LKK I+QDDDV+C MTEKR+L +A +HPYLT L+ CFQ+ DRLFFVMEYV+GGDLMFQIQ++RKFDE RSRFYAAE+T AL FLH+ GVIYRDLKLDN+LLD GH KLADFGMCK+ +L T+TFCGTPDYIAPEI+ E +Y SVDWWALGVLMYEMMAGQPPFEADNED+LF+ ILH DVLYPVWLS+EA+SILK F+TKN KRLGCV GE AI +HPFF IDW LE +++ PPF+P+I+++ DV NFD DFTRE P LT ++ +V INQ+EF GFSY
Sbjct: 4 FNGLLKIKICEAVSLKPTAWSLRHAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPEGRVYVIIDLSGSS---GEAPKDNEERVFRER----MRPRKRQGAVRRRVHQVNGHKFMATYLRQPTYCSHCRDFIWGVIGKQGYQCQVCTCVVHKRCHELIITKCAGLK--KQETPDQVGSQRFSVNMPHKFGIHNYKVPTFCDHCGSLLWGLLRQGLQCKVCKMNVHRRCETNVAPNCGVDARGIAKVLA-DLGVTPDKITNSGQRRKKLIAGAESPQPASGSSPSEEDRSKSAPTSPCDQEIKELENNIRKALSFDNRGEEHRAASSPDGQLM--SPGENGEVRQGQAKRLGLDEFNFIKVLGKGSFGKVMLAELKGKDEVYAVKVLKKDVILQDDDVDCTMTEKRILALARKHPYLTQLYCCFQTKDRLFFVMEYVNGGDLMFQIQRSRKFDEPRSRFYAAEVTSALMFLHQHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFESILHDDVLYPVWLSKEAVSILKAFMTKNPHKRLGCVASQNGEDAIKQHPFFKEIDWVLLEQKKIKPPFKPRIKTKRDVNNFDQDFTREEPVLTLVDEAIVKQINQEEFKGFSY 730 The following BLAST results are available for this feature:
BLAST of TCONS_00047678 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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