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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047695 ID=TCONS_00047695|Name=TCONS_00047695|organism=Clytia hemisphaerica|type=transcript|length=1954bp
GAGGTCATTCTGATTTAATAAGAACCCTAATAAAGCGGACTCGTCATGTA
TTGGAGCTACtgttaagatttttttcttcaaaaatctaaaactttCGTAT
TGAGTGGGTTATAAAGTACTTCTTATATAAAAATACTCGATAAAAgtcgt
aaaataaaaaactactgGCATATAAACTATTTTCGTCCGCActaatttga
tcaatttttggtttttgaaaatAGACTACAGATTCACTTTTAGCAAACGA
TCATTGACACTTCCAGAGGAGTCCTGGAGAATATCAATACCGTTACAGCT
GCAGTAGATTAACATCCAtcgggtttttttttgctctaatcTCTTAATGG
AAATAATCCACTGCTTGACCACAAAAGAAGTCAATGAAATATACTAGAAG
TAaacgatttgaaaaaaaagtcaagtcATAAAAAGTCATATCCCAAAAGT
CAGGAAGATCACACTTTCACCTATACCCCATCGAGCGATAATATTATTCA
TTAATCACGAAAGTTTCAAAGCTTAAAATTACCACGTTGAGCGATAGTGT
TGGAAACAATTTTCTCTTGTTTCTTTTGTTCACTTTTAAAAGCGATTTTA
TTCGATTTCTTTTCAATGCGTCGATTCTTCCTCTGTTCCTTAACATCCTT
TTTTCGTTGTTTTCGTTGCTCCggtgtttcatctttatttcgAACGTTAT
TCAGTTCAACAGTTTCCATCATTTCAGTATCAACATCCTCCTCATCTACA
TCATCGTCCTCAactttttttgctgactcagcaaaaacaCCAATAGGAAT
GCCAGTCCGTTTATGGAGTTGATATTTCTTTGTCGATTCCTCGGCAATCA
ATTTAGGATGATTGTAAATATTGGAATAAGTGCTGATGATAGATTCACAG
TCCCATTTCTCTTTAGGTTTGGTCATAAATTGCTCAAAGATTTTCTGCTC
GTCTTCTTCCTCAGATTCAGCATCATTCTCCTCGATTAGGTTCTCGTCGT
CACCATCTTTAGTTTTGGACAAATCGTGTTTCTTGTTACTCTCATAAAAA
TCTTCAATGACGTTATTGACCAGATCATTATTGACATTGAAGACACCTTG
AACTTCCTCTTGATCGACACATCCAATCGCTTCCTCATCATATTCCTCCA
TAATCCTCTCGAAACGATCATCCAAAACTTTCAAACCTTCGGTACGTCGA
ATAACAGACGAAGTCATGGAATAATTAGTGAATCGAGATTTGGTTTCCTC
ATTTGCAAAAGGGTCTTCATCGTCTGACATTAAATTGTCAGAGGAGAAAT
AACTTTCGTTTTCACTGTCTGTTTCATCATCTTCGTTACCAGTCTCCTGG
TACCCTGCTCTTCTCTCTGAGAAGAGTCCTTCTGATAAATCACAACCATC
TTTAATTAATCCACCATCAGCATTTGCTTTCATAATGAAATCATCGTCAA
GAAAATTATCAGGGTCATCGAAATCGACATCCTCATCAAGCGCTTGAACA
ATATCAGGGTCCCAATCAGGTTGCGGGCCTCTCGGTAAAACACCTTTATT
CAACATTCCAATATCCTCCTCCTGAGCAGAGGCGAACGCATCTGATGGTA
ATTTCAGATTTCCAAACGAGACATCCTCACGATCCTCCTCATCTTTGACA
ATAATTTCTGACGGTTTGGATGGGGTATCAGCTAGAATAAGCATTCCTTC
ACCTCTAGGACGTAAATGCTGCATGTAGTCATAATCGTCATCATATGTGA
TACcatatttaacattttcttcGTTCTGATTCTTCTCACCTGAATCATTT
GTTTGGTCAACTGGTAAGAGAACATGTTCACCTACTTCATCATCTGCTTG
GAGAGGATCACGCTGGCTACGATGCACAAGTGTAAACTTGTGTGCAGATT
TCTTGTCAATAAAttgcttcttctttttcctACCCATTTTTTCCTTTCCt
gaga Run BLAST on NCBI protein sequence of TCONS_00047695-protein >TCONS_00047695-protein ID=TCONS_00047695-protein|Name=TCONS_00047695-protein|organism=Clytia hemisphaerica|type=polypeptide|length=478bp
SGKEKMGRKKKKQFIDKKSAHKFTLVHRSQRDPLQADDEVGEHVLLPVDQ
TNDSGEKNQNEENVKYGITYDDDYDYMQHLRPRGEGMLILADTPSKPSEI
IVKDEEDREDVSFGNLKLPSDAFASAQEEDIGMLNKGVLPRGPQPDWDPD
IVQALDEDVDFDDPDNFLDDDFIMKANADGGLIKDGCDLSEGLFSERRAG
YQETGNEDDETDSENESYFSSDNLMSDDEDPFANEETKSRFTNYSMTSSV
IRRTEGLKVLDDRFERIMEEYDEEAIGCVDQEEVQGVFNVNNDLVNNVIE
DFYESNKKHDLSKTKDGDDENLIEENDAESEEEDEQKIFEQFMTKPKEKW
DCESIISTYSNIYNHPKLIAEESTKKYQLHKRTGIPIGVFAESAKKVEDD
DVDEEDVDTEMMETVELNNVRNKDETPEQRKQRKKDVKEQRKNRRIEKKS
NKIAFKSEQKKQEKIVSNTIAQRGNFKL Run BLAST on NCBI transcript from alignment at scaffold_133:254983..256936 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047695 ID=TCONS_00047695|Name=TCONS_00047695|organism=Clytia hemisphaerica|type=transcript|length=1954bp|location=Sequence derived from alignment at scaffold_133:254983..256936 (Clytia hemisphaerica)
tctcaGGAAAGGAAAAAATGGGTaggaaaaagaagaagcaaTTTATTGAC
AAGAAATCTGCACACAAGTTTACACTTGTGCATCGTAGCCAGCGTGATCC
TCTCCAAGCAGATGATGAAGTAGGTGAACATGTTCTCTTACCAGTTGACC
AAACAAATGATTCAGGTGAGAAGAATCAGAACgaagaaaatgttaaatat
gGTATCACATATGATGACGATTATGACTACATGCAGCATTTACGTCCTAG
AGGTGAAGGAATGCTTATTCTAGCTGATACCCCATCCAAACCGTCAGAAA
TTATTGTCAAAGATGAGGAGGATCGTGAGGATGTCTCGTTTGGAAATCTG
AAATTACCATCAGATGCGTTCGCCTCTGCTCAGGAGGAGGATATTGGAAT
GTTGAATAAAGGTGTTTTACCGAGAGGCCCGCAACCTGATTGGGACCCTG
ATATTGTTCAAGCGCTTGATGAGGATGTCGATTTCGATGACCCTGATAAT
TTTCTTGACGATGATTTCATTATGAAAGCAAATGCTGATGGTGGATTAAT
TAAAGATGGTTGTGATTTATCAGAAGGACTCTTCTCAGAGAGAAGAGCAG
GGTACCAGGAGACTGGTAACGAAGATGATGAAACAGACAGTGAAAACGAA
AGTTATTTCTCCTCTGACAATTTAATGTCAGACGATGAAGACCCTTTTGC
AAATGAGGAAACCAAATCTCGATTCACTAATTATTCCATGACTTCGTCTG
TTATTCGACGTACCGAAGGTTTGAAAGTTTTGGATGATCGTTTCGAGAGG
ATTATGGAGGAATATGATGAGGAAGCGATTGGATGTGTCGATCAAGAGGA
AGTTCAAGGTGTCTTCAATGTCAATAATGATCTGGTCAATAACGTCATTG
AAGATTTTTATGAGAGTAACAAGAAACACGATTTGTCCAAAACTAAAGAT
GGTGACGACGAGAACCTAATCGAGGAGAATGATGCTGAATCTGAGGAAGA
AGACGAGCAGAAAATCTTTGAGCAATTTATGACCAAACCTAAAGAGAAAT
GGGACTGTGAATCTATCATCAGCACTTATTCCAATATTTACAATCATCCT
AAATTGATTGCCGAGGAATCGACAAAGAAATATCAACTCCATAAACGGAC
TGGCATTCCTATTGGtgtttttgctgagtcagcaaaaaaagtTGAGGACG
ATGATGTAGATGAGGAGGATGTTGATACTGAAATGATGGAAACTGTTGAA
CTGAATAACGTTcgaaataaagatgaaacaccGGAGCAACGAAAACAACG
AAAAAAGGATGTTAAGGAACAGAGGAAGAATCGACGCATTGAAAAGAAAT
CGAATAAAATCGCTTTTAAAAGTGAACAAAAGAAACAAGAGAAAATTGTT
TCCAACACTATCGCTCAACGTGGTAATTTTAAGCTTTGAAACTTTCGTGA
TTAATGAATAATATTATCGCTCGATGGGGTATAGGTGAAAGTGTGATCTT
CCTGACTTTTGGGATATGACTTTTTATgacttgacttttttttcaaatcg
ttTACTTCTAGTATATTTCATTGACTTCTTTTGTGGTCAAGCAGTGGATT
ATTTCCATTAAGAgattagagcaaaaaaaaacccgaTGGATGTTAATCTA
CTGCAGCTGTAACGGTATTGATATTCTCCAGGACTCCTCTGGAAGTGTCA
ATGATCGTTTGCTAAAAGTGAATCTGTAGTCTattttcaaaaaccaaaaa
ttgatcaaattagTGCGGACGAAAATAGTTTATATGCcagtagtttttta
ttttacgacTTTTATCGAGTATTTTTATATAAGAAGTACTTTATAACCCA
CTCAATACGaaagttttagatttttgaagaaaaaaatcttaacaGTAGCT
CCAATACATGACGAGTCCGCTTTATTAGGGTTCTTATTAAATCAGAATGA
CCTC Coding sequence (CDS) from alignment at scaffold_133:254983..256936 >TCONS_00047695 ID=TCONS_00047695|Name=TCONS_00047695|organism=Clytia hemisphaerica|type=CDS|length=1437bp|location=Sequence derived from alignment at scaffold_133:254983..256936 (Clytia hemisphaerica)
tcaGGAAAGGAAAAAATGGGTaggaaaaagaagaagcaaTTTATTGACAA
GAAATCTGCACACAAGTTTACACTTGTGCATCGTAGCCAGCGTGATCCTC
TCCAAGCAGATGATGAAGTAGGTGAACATGTTCTCTTACCAGTTGACCAA
ACAAATGATTCAGGTGAGAAGAATCAGAACgaagaaaatgttaaatatgG
TATCACATATGATGACGATTATGACTACATGCAGCATTTACGTCCTAGAG
GTGAAGGAATGCTTATTCTAGCTGATACCCCATCCAAACCGTCAGAAATT
ATTGTCAAAGATGAGGAGGATCGTGAGGATGTCTCGTTTGGAAATCTGAA
ATTACCATCAGATGCGTTCGCCTCTGCTCAGGAGGAGGATATTGGAATGT
TGAATAAAGGTGTTTTACCGAGAGGCCCGCAACCTGATTGGGACCCTGAT
ATTGTTCAAGCGCTTGATGAGGATGTCGATTTCGATGACCCTGATAATTT
TCTTGACGATGATTTCATTATGAAAGCAAATGCTGATGGTGGATTAATTA
AAGATGGTTGTGATTTATCAGAAGGACTCTTCTCAGAGAGAAGAGCAGGG
TACCAGGAGACTGGTAACGAAGATGATGAAACAGACAGTGAAAACGAAAG
TTATTTCTCCTCTGACAATTTAATGTCAGACGATGAAGACCCTTTTGCAA
ATGAGGAAACCAAATCTCGATTCACTAATTATTCCATGACTTCGTCTGTT
ATTCGACGTACCGAAGGTTTGAAAGTTTTGGATGATCGTTTCGAGAGGAT
TATGGAGGAATATGATGAGGAAGCGATTGGATGTGTCGATCAAGAGGAAG
TTCAAGGTGTCTTCAATGTCAATAATGATCTGGTCAATAACGTCATTGAA
GATTTTTATGAGAGTAACAAGAAACACGATTTGTCCAAAACTAAAGATGG
TGACGACGAGAACCTAATCGAGGAGAATGATGCTGAATCTGAGGAAGAAG
ACGAGCAGAAAATCTTTGAGCAATTTATGACCAAACCTAAAGAGAAATGG
GACTGTGAATCTATCATCAGCACTTATTCCAATATTTACAATCATCCTAA
ATTGATTGCCGAGGAATCGACAAAGAAATATCAACTCCATAAACGGACTG
GCATTCCTATTGGtgtttttgctgagtcagcaaaaaaagtTGAGGACGAT
GATGTAGATGAGGAGGATGTTGATACTGAAATGATGGAAACTGTTGAACT
GAATAACGTTcgaaataaagatgaaacaccGGAGCAACGAAAACAACGAA
AAAAGGATGTTAAGGAACAGAGGAAGAATCGACGCATTGAAAAGAAATCG
AATAAAATCGCTTTTAAAAGTGAACAAAAGAAACAAGAGAAAATTGTTTC
CAACACTATCGCTCAACGTGGTAATTTTAAGCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047695-exon-scaffold_133-1491911889:254983..256936 | TCONS_00047695-exon-scaffold_133-1491911889:254983..256936 | Clytia hemisphaerica | exon |
| TCONS_00047695-exon-scaffold_133-1510915933:254983..256936 | TCONS_00047695-exon-scaffold_133-1510915933:254983..256936 | Clytia hemisphaerica | exon |
| TCONS_00047695-exon-scaffold_133-1575043694:254983..256936 | TCONS_00047695-exon-scaffold_133-1575043694:254983..256936 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_133 | supercontig | scaffold_133:254983..256936 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007307 | LTV |
Blast
BLAST of TCONS_00047695 vs. Swiss-Prot (Human)
Match: LTV1 (Protein LTV1 homolog OS=Homo sapiens GN=LTV1 PE=1 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 1.821e-69 Identity = 182/467 (38.97%), Postives = 280/467 (59.96%), Query Frame = -3
Query: 549 AHKFTLVHRSQRDPLQADDEVGEHVLLPVDQTNDSGEKNQNEENVKYGITYDDDYDYMQHLR-PRGEGMLILADTPSKPSEIIVKDEEDREDVSFGN--LKLPSDAFASAQEEDIGMLNKGVLPRGPQPDWDPDIVQALXXXXXXXXXXXXXXXXFIMKANADGGLIKDGCDLSEGLFSERRAGYQXXXXXXXXXXXXXXSYFSSDNLMSDDE--------------DPFANEETKSRFTNYSMTSSVIRRTEGLKVLDDRFERIMEEYDEEAIGCVDQEEVQGXXXXXXXXXXXVIEDFYESNKKHDLSKTKDGDDXXXXXXXXXXXXXXXEQKIFEQFMTKPKEKWDCESIISTYSNIYNHPKLIA-EESTKKYQLHKRTGIPIGVFAESAKKXXXXXXXXXXXXXXXXXXXELNNVRNKDETPEQRKQRKKDVKEQRKNRRIEKKSNKIAFKSEQKKQEKIVSN 1895
A F LVHRSQRDPL AD+ + VLLP + ++ + + E KYG+ +DDDYDY+QHL+ P G LI + T S + + EE E + + +KLPS FAS EED+G+LNK GP+ D+DPDIV ALD+D DFDDPDN L+DDFI++AN G ++G D+ + +E + +++ +E +++ + + S L+SD++ F +EETKSRFT YSMTSSV+RR E L + D+RFE+ E+YD++ IG +D E++G V+++ + V+ D+Y+ K + K + + E +E +E+++ + + KEKWDCESI STYSN+YNHP+LI + K+ ++ +TGIP+ V + K + + + R+K+E+ E ++ RK+ +KE+RK RR+EKK+NK+AFK E+++QEK + N
Sbjct: 15 AVSFHLVHRSQRDPLAADESAPQRVLLPTQKIDN---EERRAEQRKYGVFFDDDYDYLQHLKEPSGPSELIPSSTFSAHN----RREEKEETLVIPSTGIKLPSSVFASEFEEDVGLLNKAAPVSGPRLDFDPDIVAALDDDFDFDDPDNLLEDDFILQANKATGE-EEGMDIQKS-ENEDDSEWEDVDDEKGDSNDD----YDSAGLLSDEDCMSVPGKTHRAIADHLFWSEETKSRFTEYSMTSSVMRRNEQLTLHDERFEKFYEQYDDDEIGALDNAELEGSIQVDSNRLQEVLNDYYKE-KAENCVKLNTLEPLEDQDLPMNELDESEEEEMITVVLEEAKEKWDCESICSTYSNLYNHPQLIKYQPKPKQIRISSKTGIPLNVLPK--KGLTAKQTERIQMINGSDLPKVSTQPRSKNESKEDKRARKQAIKEERKERRVEKKANKLAFKLEKRRQEKELLN 465
The following BLAST results are available for this feature:
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