TCONS_00047871 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047871
Unique NameTCONS_00047871
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3925

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047871 ID=TCONS_00047871|Name=TCONS_00047871|organism=Clytia hemisphaerica|type=transcript|length=3925bp
ATTTGACGGTCAATAACTATAAAATACTGGAATGTATATGTTTGTAATAC
ATTTTTGTATCttatattataaattaaaaaaactcttACATACTTCTATC
GTACTAATCAAGCTATAATTAGTACATAAACCCCCGGTATTTAAAGTGAA
AGAACAATAGACAACTCGGAGTCGATTGGTTTTCCTCTGTACAACAAAAA
TGGCTGATTCGTTTGATAGAGCGAACTTCGCGAaagtctttgttttgatg
tgacTGAATTTTTATCGGAgttcaaattttacaaaacttttcaaCTGTAT
TTCAACCTAAAACCCTTGGGATACATTTTATATATGTAAAAAGTGTGAtg
atatttcaatgaaaatgactCGATTACAACAAAGACGAAACAGTTCCTGC
AATTGTGGGAAAACAACAAAAGAGAGCAAGCCTTTTGTCACGAAAAATAA
AACCTACGAAACTCGCTCTGGTGTGCAAAGAAAACAAGACGTCTCGAATG
GCTTTCAAAAGAATTTGCCCGTAAACTGTAGCACACTAAATCTGAGAGGa
aaagttttcattaaaaagatgGAGGGTCCTATCGCAACACTACCACCGCT
GAGAAATGGCAAAATTAATGGAGATGGAACAGTAGAATTGATTAAAAGTC
CGACATCTAAAGTTTGTAAAAAGACTCGTAAAGCCGTCGTTCAAAATGCG
AAAGGAAATGGGCTGATCGATAATACTCTAGAAGAAATGATCACTGCTAA
ACTCAAGGTAGATTTTATTGACATTAAtgctgatattttgaaaaaagaag
acactgcAATTTCGAATGGTATTCTGACAGATGAAATAGTAAAATCTCTC
CAAAACGAAAcgaaccaaaacaaagaaattcaaaatggcgacttAGTAGA
AAGAAATGGTGTGGATCAAATTTTGTTGAATGGAGAAGAAATAAAAGTAA
AGGAGGAGATTGTAAGTAATGGAAATATTGAAAACACTGAGAACAATCTT
AatctaaaatgtcaatatgagaACCTAGATTTAGAAAATGATGAGGATGT
AAAACAACCAAAGAAAAAGAGACTAAAAAGAAGGACtgcttttgaaattt
tcatgaataACACTATTGATCTAAGTGGAATGACTGTCAAAAGAACTAGA
AAAGCACCATCTTCTTTTTCACCTGAATCCCCCCGTAAGGTAAAATCAAA
TGATGTTCCACCACAGGCACAACAAATAAAGCTTCCTGTAGATGAACCGG
TTCCATATAAACCGGTAATACAATTGACAAAAAAAGGACTACCGTTTAAG
AAAAAAGGGAGAAAGCCAAGACTCAAAGGTCCAGTAGAACATTACTTGGA
TGTAATTGTTAGAAACAAGttaaaagaaaatgtttcaaatagtAATTGTG
ATGACGATGATAATAAAGGATCTGAAATAGATCTAGACTCAAATAATATT
ACAACCAAAGATATTGTTGAAATTCCTGATAAACCTGAAGAAATTCTAGA
AAACAATCCTCCCTCAGactcatttaaaacaaaaactgtTGAACAGCTGC
TATTGCCAATATGTAATGCAAAGCCAATCAAAAATCGTTACCATGatcta
aaacgaaaaaatattatgaaaaaacAGCTTagtaaaaagagaaaaacttt
CAGTAAAATGGACACTGATGAATTTTCTAGTCCTATCATAAGTGTTTTAG
GATATCGTACTCAcaaattaaagaaagaaatgCTTGTCCAGTTTGAAAAT
GGAACTAGTAATTGGATTGATTACCATGAGAAGGAATTCAATGTTACAAA
AATGAAGGAATATTATGAGCACACTGAACAATCTTTACCGATCATACATC
GGCTTGGGTATCAAACATTTTTCCCTTCATCATCTATCTCTTCATTCTCT
GACCAAGACTTGTCATCAAGTGATGAATCTGATCTTGATGATGTTTTCTT
TAGACCGTTGCCAGCATTGGGGAAGAAATGTGACCAGCTTTTATCAAATA
AGGAAGCTCTACAGTCAACAAATAAAGAGGTAGAAATGAGTCTCGATTCA
GAAAAAGGACTCAAAAACTTGTGCAACTATGCTTTATCTTCAAAATGTAG
CAGTATCTACCCATATCAAAAGATGCAAGAAATGTTTGTTAAGAACGATG
GAGACTTTGTGAGCatttatttgagaaaattaaatacaaaagatcagaaa
aagggtgatcTTGTCAATCCCAGATGTTGTGAAAAAGTTATTTCAACTTT
GGAGGACTGTGCTGTTGATGATGTTTGTAAGGCAGTTATCATCAATGGCA
TAGAGGAGTACTTTGCATCAAGCAGTATATTTGAGAAATTGTTGAAGAAA
ACACCAGCACTAGAAGGAAAGAAATATGAAGAGGATGTATCAATGTTGAG
GTATTTGATTCAAACGATCCGGAACTTCAACAAACCCATCGTAGCCGTTA
TACGTAAGACAGCGATTGGATTCCCTGCTTCGCTTCTCTCTTTATTTGAT
ATGGTTTTTCACGagCGAGAAACAGAGAAAGCTTCACACACCAGCAAACA
ATCAAACGTAGGAAGGAAGAAAACGTTGAACAAGCAACCTTCGGAAGATG
TCGAGGATAGCGAGGTATCGTGCCCTAGTACAGAAACAGAATGCCAATCT
TTTGTGTTTCCAAGGTTGATGGGCTTGACTCAGAATAACGAAAGTCGAAT
CATGGGTGAGGACACACGGCTTCTTTCGCCTACAGATTGTACGGAAAACG
TCGATTGTTTGAATGAAGCGCCGTTATCGCAACAACTTCGAAATAGCCTT
CGTCACATGCGCTCCAATAGTAAGATACAAATTAAACGACGTGGTAGGTC
CCAGTCGGAGATCTCAGAGCCAGCTAATGATGAGGAATCAGGCGatgagg
aggaggaggaggttGATGACGTAATGTTACCGGCACGTCAATCTAATCAT
TTGGAACAGTTAGAACGATTGGAGAGGGAAATTCTACAAGAGAAAGAAAG
AACTGAAAAGTATATGAGCGAGCTTTTCTCTTATATGAATTCACTAGacg
aatgaaaatgatttttattgaTGATGATGGTTGGAAATAAACGTTTAAAA
TGGTTAACAATGCATTTTTACTATATAGTTAGGTTTAACAACAATAActa
tttttagttattttttaacaaattatttatttttcttgataCGACGCAGT
TGTATTTAGCCTGTAGATAGTTTTTTTGGCTGGTTTTTACGCAATATTTT
ATTGGTTTTATTATTAGTGATGTTTTAAccgattttttttgtgattttct
gaACAGCCAAGGGTCAAATGGAAGCATGTCAAATTTTGGTTTCcagagta
cacgttttttaataagaacttcCAAAATTCTTGGAGCCTTCAGATGTTTT
TAACCTTTTGAGTTCAAAGCCTAAAgattttcttaacatgttcttaattt
ttgcccattttcctaagaaatctgTAGAGAagtctgtaaagccttaaaat
gtcctTGGCTTGTTCTTGGACATTTTTGGTCATCGAAAccgtatgttctt
atatagtttgtttttataaaaaacgtgtatgctctCTCTTCCTACCTTGT
AATTTTTGTTAAcctttgattgaaaaatttcggaAAGTCTAGCTCTAAAG
TACAATATACCAGACAACGTTAGCGAAGTTTTCTGTGTGATCAATTCAAC
AGTAAAATATAGGCTTCCACCCTGGCAATTTAATTATACGCCCTTATAAG
GGtggttttgttttaaatgtacaGTTGTTATTATTTTGATGGCTATGtag
ttttacattttatttGGCTACTTGTGAAATACTGTAATAATATAGATTCA
TTTTATggatattttgttttcattttgaagaaatcCTTTGTGTTTAGAAA
TTCTGCACTGATAGATCAATTTGAC
Run BLAST on NCBI

transcript from alignment at scaffold_139:188518..194742+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047871 ID=TCONS_00047871|Name=TCONS_00047871|organism=Clytia hemisphaerica|type=transcript|length=6225bp|location=Sequence derived from alignment at scaffold_139:188518..194742+ (Clytia hemisphaerica)
ATTTGACGGTCAATAACTATAAAATACTGGAATGTATATGTTTGTAATAC ATTTTTGTATCttatattataaattaaaaaaactcttACATACTTCTATC GTACTAATCAAGCTATAATTAGTACATAAACCCCCGGTATTTAAAGTGAA AGAACAATAGACAACTCGGAGTCGATTGGTTTTCCTCTGTACAACAAAAA TGGCTGATTCGTTTGATAGAGCGAACTTCGCGAaagtctttgttttgatg tgacTGAATTTTTATCGGAgttcaaattttacaaaacttttcaaCTGTAT TTCAACCTAAAACCCTTGGGATACATTTTATATATGTAAAAAGTGTGAtg atatttcaatgaaaatgactCGATTACAACAAAGACGAAACAGTTCCTGC AATTGTGGGAAAACAACAAAAGAGAGCAAGCCTTTTGTCACGAAAAATAA AACCTACGAAACTCGCTCTGGTGTGCAAAGAAAACAAGACGTCTCGAATG GCTTTCAAAAGAATTTGCCCGTAAACTGTAGCACACTAAATCTGAGAGGa aaagttttcattaaaaagatgGAGGGTCCTATCGCAACACTACCACCGCT GAGAAATGGCAAAATTAATGGAGATGGAACAGTAGAATTGATTAAAAGTC CGACATCTAAAGTTTGTAAAAAGACTCGTAAAGCCGTCGTTCAAAATGCG AAAGGAAATGGGCTGATCGATAATACTCTAGAAGAAATGATCACTGCTAA ACTCAAGGTAGATTTTATTGACATTAAtgctgatattttgaaaaaagaag acactgcAATTTCGAATGGTATTCTGACAGATGAAATAGTAAAATCTCTC CAAAACGAAAcgaaccaaaacaaagaaattcaaaatggcgacttAGTAGA AAGAAATGGTGTGGATCAAATTTTGTTGAATGGAGAAGAAATAAAAGTAA AGGAGGAGATTGTAAGTAATGGAAATATTGAAAACACTGAGAACAATCTT AatctaaaatgtcaatatgagaACCTAGATTTAGAAAATGATGAGGATGT AAAACAACCAAAGAAAAAGAGACTAAAAAGAAGGACtgcttttgaaattt tcatgaataACACTATTGATCTAAGTGGAATGACTGTCAAAAGAACTAGA AAAGCACCATCTTCTTTTTCACCTGAATCCCCCCGTAAGGTAAAATCAAA TGATGTTCCACCACAGGCACAACAAATAAAGCTTCCTGTAGATGAACCGG TTCCATATAAACCGGTAATACAATTGACAAAAAAAGGACTACCGTTTAAG AAAAAAGGGAGAAAGCCAAGACTCAAAGGTCCAGTAGAACATTACTTGGA TGTAATTGTTAGAAACAAGttaaaagaaaatgtttcaaatagtAATTGTG ATGACGATGATAATAAAGGATCTGAAATAGATCTAGACTCAAATAATATT ACAACCAAAGATATTGTTGAAATTCCTGATAAACCTGAAGAAATTCTAGA AAACAATCCTCCCTCAGactcatttaaaacaaaaactgtTGAACAGCTGC TATTGCCAATATGTAATGCAAAGCCAATCAAAAATCGTTACCATGatcta aaacgaaaaaatattatgaaaaaacAGCTTagtaaaaagagaaaaacttt CAGTAAAATGGACACTGATGAATTTTCTAGTCCTATCATAAGTGTTTTAG GATATCGTACTCAcaaattaaagaaagaaatgCTTGTCCAGTTTGAAAAT GGAACTAGTAATTGGATTGATTACCATGAGAAGGAATTCAATGTTACAAA AATGAAGGAATATTATGAGCACACTGAACAATCTTTACCGATCATACATC GGCTTGGGTATCAAACATTTTTCCCTTCATCATCTATCTCTTCATTCTCT GACCAAGACTTGTCATCAAGTGATGAATCTGATCTTGATGATGTTTTCTT TAGACCGTTGCCAGCATTGGGGAAGAAATGTGACCAGCTTTTATCAAATA AGGAAGCTCTACAGTCAACAAATAAAGAGGTAGAAATGAGTCTCGATTCA GAAAAAGGACTCAAAAACTTGTGCAACTATGCTTTATCTTCAAAATGTAG CAGTATCTACCCATATCAAAAGATGCAAGAAATGTTTGTTAAGAACGATG GAGACTTTGTGAGCatttatttgagaaaattaaatacaaaagatcagaaa aagggtgatcTTGTCAATCCCAGATGTTGTGAAAAAGTTATTTCAACTTT GGAGGACTGTGCTGTTGATGATGTTTGTAAGGCAGTTATCATCAATGGCA TAGAGGAGTACTTTGCATCAAGCAGTATATTTGAGAAATTGTTGAAGAAA ACACCAGCACTAGAAGGAAAGAAATATGAAGAGGATGTATCAATGTTGAG GTATGTATCATTCTTAATAATGTCCTTTGCCTTTAATTAAAAAAGAGTGG TCAAATGCTATTGACTCTGGCCCTGCTAATTTTTAGATTTGAGATTACTT TAGGCATACTAACTTTCGCAAGGACAAAAAATCGCAAAATTTACGACACT TACTTTCGCAAATTTAACGGAAAAATAATTTTTTCAAGCATTAACTTTCG TAAATCAAGACTTAAAATTGAATATTTTCACATGAAAAAATGGCTTAGAG GCACGAATACTTCTGGTATTGGCTTGAAACATTGGTCCTTTGACTTATTA GTCTTTTAGCAAGCAGGCTAAAAAGTTCCCTAAAAGTTACATTTTATTCA AAGGTTGAAGTTTTACATAAACTTTCGCGAATGGCCCTTCCTAGAATTTT TAAAGACATTTATTTTCGCAAAACAGGTCGAAATTCACGAAAATGGCAAA AGTTTCTGCTTGCGAAAGTTTCTGTCTAAATTAGTACATATAAGAATTTT AAAATTTGATCAATTTTGTTGTAGCTTTGAAGACTGCACATTTTTTTCCA TTTCATTATCATATTTTTGGTGTAGACACAAAATTTGGACACATGGTATC TCGAAATACTTTACTGTGGTTTCGAGAAATAATTTCTCTTCAATTTTTAT TAATCTTCATTCTATTCAAATTTTCTTTTTGCAATGGCTTAGTTGTCTTG TAGTGTTTTCTGAATATCCTCCTTCTTGACCTTAGTATAGAGGCTACTGT TCTTTCTTTTAACTTCTTTGGTATTTTTGGTTCTCTTCTGAAAACTTAGT TGTGAAAAAGGATGAATATAGATTTCACAGCCAGGGTTGTTATTTTATAA AAGCAAATAAAAACTGAGAGAGGTTTTGTCTCTTTGACTCATCCATGCTT GAATTCTTTTCAAGGGAGAGACATATTATTGAAATTTGTAGGTTCAAGGT CCTACTTTCTCTCTACTTGAGTAATCTATTcacatttttttcacattttt acagaacttttttcatttctttttatgatttttctctTCTTAGTTAGAGA GGGATGAAATCTATAAGTCTTTCATTGCTTTCAAAGAAAGGTGCAAGTTT TAACTCTCTTTTACAGTAAGGAGCAATGTTTACGTTGTAttataaaacct ttaagttgaAAAAAAGAATTGCAAGCTgactattttttgttttgattaga aAGGGCTGTTATCGAAAAATGAATGAGAGAGCCTTGATTACTTGATTAGT GTCGAGTTACCATTTCCTCTTTTTACAGTCATACTTCATGCCTCactatt tgaaatttctcatccATTGTTGATTTTAATGACCTATATTTATTACGAAA AAGTTGGTAGTTATAAGCAGTTAATTACATTTATCATTTCATATCTATTT GAATTGAATGTCCATTCAAAAGAATGTTCTGTGTATTACTATATGGAACG ATTATATCTGAAGTGTGTGCGAAAGCTCTCTCATTTTATTATGTATTGAT TTTACagcttttatttgaaatgtaTATTATGGATTTGTGAATCATGTCTT GCTAGCTCAAGTTCTCTCTTGTTTTTTCCTCCCAATGAGAACTTTTATGG TTCTAACTTTATTCTCATCATGGTCTATTCGTtgcaaatcgaaagtgaaa gtcagtcgcttgaaaacgaaagtaaacaACGCAATCGCGTCAAACAAAAT CATTCCGAGAAAAAGTTGCGAGTCAGATCTAAGACGGAAgttatacattt ttttgtttggattATTTTTACAGGTATTTGATTCAAACGATCCGGAACTT CAACAAACCCATCGTAGCCGTTATACGTAAGACAGCGATTGGATTCCCTG CTTCGCTTCTCTCTTTATTTGATATGGTTTTTCACGaggtaaagattttt ttatgataacGTTTTTATCAATCATTCCAAAATCAGCTGATAATactaaa atttttatataattccTCTTTTCACTCCAAGTATAAACATTGGAAGTATT AAGGGGATTTTTCTCTTTTCGTGTATTTTAATTCGTCGTTAAAATATTGT AGTTGTTATGAcgattcacttttttgaatgaTTGTAATTAAATGACCAAG CACGTTATTGCAAGATGTCTATTCTAATGACCGCATTGTTATTTCAAACG ACCCCATAAATAGTGTAATGACCCTTGAGATTTATGAAGCCGGAAAATCT TGTCATAGAGAGAGTGTATTTGCACGTGGTACTCATcaaatgtttatttt ctgaaaggTTTTTGGTATCAGGATTTTCGACGCACGCCGTCTTTTTCTAT GACGGTAAACTGGTTATCCACGCTAAGTATTTGTATTGTTAATATTAATA CTTTTAAATCCTTTATTATGGCATGTTAAAAGTAAAGCATTTTCCTCTAC TTTTATTTCGAACAGCGAGAAACAGAGAAAGCTTCACACACCAGCAAACA ATCAAACGTAGGAAGGAAGAAAACGTTGAACAAGCAACCTTCGGAAGATG TCGAGGATAGCGAGGTATCGTGCCCTAGTACAGAAACAGAATGCCAATCT TTTGTGTTTCCAAGGTTGATGGGCTTGACTCAGAATAACGAAAGTCGAAT CATGGGTGAGGACACACGGCTTCTTTCGCCTACAGATTGTACGGAAAACG TCGATTGTTTGAATGAAGCGCCGTTATCGCAACAACTTCGAAATAGCCTT CGTCACATGCGCTCCAATAGTAAGATACAAATTAAACGACGTGGTAGGTC CCAGTCGGAGATCTCAGAGCCAGCTAATGATGAGGAATCAGGCGatgagg aggaggaggaggttGATGACGTAATGTTACCGGCACGTCAATCTAATCAT TTGGAACAGTTAGAACGATTGGAGAGGGAAATTCTACAAGAGAAAGAAAG AACTGAAAAGTATATGAGCGAGCTTTTCTCTTATATGAATTCACTAGacg aatgaaaatgatttttattgaTGATGATGGTTGGAAATAAACGTTTAAAA TGGTTAACAATGCATTTTTACTATATAGTTAGGTTTAACAACAATAActa tttttagttattttttaacaaattatttatttttcttgataCGACGCAGT TGTATTTAGCCTGTAGATAGTTTTTTTGGCTGGTTTTTACGCAATATTTT ATTGGTTTTATTATTAGTGATGTTTTAAccgattttttttgtgattttct gaACAGCCAAGGGTCAAATGGAAGCATGTCAAATTTTGGTTTCcagagta cacgttttttaataagaacttcCAAAATTCTTGGAGCCTTCAGATGTTTT TAACCTTTTGAGTTCAAAGCCTAAAgattttcttaacatgttcttaattt ttgcccattttcctaagaaatctgTAGAGAagtctgtaaagccttaaaat gtcctTGGCTTGTTCTTGGACATTTTTGGTCATCGAAAccgtatgttctt atatagtttgtttttataaaaaacgtgtatgctctCTCTTCCTACCTTGT AATTTTTGTTAAcctttgattgaaaaatttcggaAAGTCTAGCTCTAAAG TACAATATACCAGACAACGTTAGCGAAGTTTTCTGTGTGATCAATTCAAC AGTAAAATATAGGCTTCCACCCTGGCAATTTAATTATACGCCCTTATAAG GGtggttttgttttaaatgtacaGTTGTTATTATTTTGATGGCTATGtag ttttacattttatttGGCTACTTGTGAAATACTGTAATAATATAGATTCA TTTTATggatattttgttttcattttgaagaaatcCTTTGTGTTTAGAAA TTCTGCACTGATAGATCAATTTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030468XLOC_030468Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047871-exon-scaffold_139-1491911889:188518..190917TCONS_00047871-exon-scaffold_139-1491911889:188518..190917Clytia hemisphaericaexon
TCONS_00047871-exon-scaffold_139-1510915933:188518..190917TCONS_00047871-exon-scaffold_139-1510915933:188518..190917Clytia hemisphaericaexon
TCONS_00047871-exon-scaffold_139-1575043694:188518..190917TCONS_00047871-exon-scaffold_139-1575043694:188518..190917Clytia hemisphaericaexon
TCONS_00047871-exon-scaffold_139-1491911889:192691..192805TCONS_00047871-exon-scaffold_139-1491911889:192691..192805Clytia hemisphaericaexon
TCONS_00047871-exon-scaffold_139-1510915933:192691..192805TCONS_00047871-exon-scaffold_139-1510915933:192691..192805Clytia hemisphaericaexon
TCONS_00047871-exon-scaffold_139-1575043694:192691..192805TCONS_00047871-exon-scaffold_139-1575043694:192691..192805Clytia hemisphaericaexon
TCONS_00047871-exon-scaffold_139-1491911889:193333..194742TCONS_00047871-exon-scaffold_139-1491911889:193333..194742Clytia hemisphaericaexon
TCONS_00047871-exon-scaffold_139-1510915933:193333..194742TCONS_00047871-exon-scaffold_139-1510915933:193333..194742Clytia hemisphaericaexon
TCONS_00047871-exon-scaffold_139-1575043694:193333..194742TCONS_00047871-exon-scaffold_139-1575043694:193333..194742Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:188518..194742 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.50632 4.15231 6.83188 6.61426 55.9019 35.4937 29.0842 31.4549 8.73378 8.98049 8.44744 8.69187 8.14392 6.12946 6.69679 9.74319 7.53106 8.14732 3.10471 4.32337 9.28207 9.54058 6.13218 6.85841 37.4494 35.9435 15.9119 10.3566 7.01268 8.4897
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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