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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047871 ID=TCONS_00047871|Name=TCONS_00047871|organism=Clytia hemisphaerica|type=transcript|length=3925bp ATTTGACGGTCAATAACTATAAAATACTGGAATGTATATGTTTGTAATAC ATTTTTGTATCttatattataaattaaaaaaactcttACATACTTCTATC GTACTAATCAAGCTATAATTAGTACATAAACCCCCGGTATTTAAAGTGAA AGAACAATAGACAACTCGGAGTCGATTGGTTTTCCTCTGTACAACAAAAA TGGCTGATTCGTTTGATAGAGCGAACTTCGCGAaagtctttgttttgatg tgacTGAATTTTTATCGGAgttcaaattttacaaaacttttcaaCTGTAT TTCAACCTAAAACCCTTGGGATACATTTTATATATGTAAAAAGTGTGAtg atatttcaatgaaaatgactCGATTACAACAAAGACGAAACAGTTCCTGC AATTGTGGGAAAACAACAAAAGAGAGCAAGCCTTTTGTCACGAAAAATAA AACCTACGAAACTCGCTCTGGTGTGCAAAGAAAACAAGACGTCTCGAATG GCTTTCAAAAGAATTTGCCCGTAAACTGTAGCACACTAAATCTGAGAGGa aaagttttcattaaaaagatgGAGGGTCCTATCGCAACACTACCACCGCT GAGAAATGGCAAAATTAATGGAGATGGAACAGTAGAATTGATTAAAAGTC CGACATCTAAAGTTTGTAAAAAGACTCGTAAAGCCGTCGTTCAAAATGCG AAAGGAAATGGGCTGATCGATAATACTCTAGAAGAAATGATCACTGCTAA ACTCAAGGTAGATTTTATTGACATTAAtgctgatattttgaaaaaagaag acactgcAATTTCGAATGGTATTCTGACAGATGAAATAGTAAAATCTCTC CAAAACGAAAcgaaccaaaacaaagaaattcaaaatggcgacttAGTAGA AAGAAATGGTGTGGATCAAATTTTGTTGAATGGAGAAGAAATAAAAGTAA AGGAGGAGATTGTAAGTAATGGAAATATTGAAAACACTGAGAACAATCTT AatctaaaatgtcaatatgagaACCTAGATTTAGAAAATGATGAGGATGT AAAACAACCAAAGAAAAAGAGACTAAAAAGAAGGACtgcttttgaaattt tcatgaataACACTATTGATCTAAGTGGAATGACTGTCAAAAGAACTAGA AAAGCACCATCTTCTTTTTCACCTGAATCCCCCCGTAAGGTAAAATCAAA TGATGTTCCACCACAGGCACAACAAATAAAGCTTCCTGTAGATGAACCGG TTCCATATAAACCGGTAATACAATTGACAAAAAAAGGACTACCGTTTAAG AAAAAAGGGAGAAAGCCAAGACTCAAAGGTCCAGTAGAACATTACTTGGA TGTAATTGTTAGAAACAAGttaaaagaaaatgtttcaaatagtAATTGTG ATGACGATGATAATAAAGGATCTGAAATAGATCTAGACTCAAATAATATT ACAACCAAAGATATTGTTGAAATTCCTGATAAACCTGAAGAAATTCTAGA AAACAATCCTCCCTCAGactcatttaaaacaaaaactgtTGAACAGCTGC TATTGCCAATATGTAATGCAAAGCCAATCAAAAATCGTTACCATGatcta aaacgaaaaaatattatgaaaaaacAGCTTagtaaaaagagaaaaacttt CAGTAAAATGGACACTGATGAATTTTCTAGTCCTATCATAAGTGTTTTAG GATATCGTACTCAcaaattaaagaaagaaatgCTTGTCCAGTTTGAAAAT GGAACTAGTAATTGGATTGATTACCATGAGAAGGAATTCAATGTTACAAA AATGAAGGAATATTATGAGCACACTGAACAATCTTTACCGATCATACATC GGCTTGGGTATCAAACATTTTTCCCTTCATCATCTATCTCTTCATTCTCT GACCAAGACTTGTCATCAAGTGATGAATCTGATCTTGATGATGTTTTCTT TAGACCGTTGCCAGCATTGGGGAAGAAATGTGACCAGCTTTTATCAAATA AGGAAGCTCTACAGTCAACAAATAAAGAGGTAGAAATGAGTCTCGATTCA GAAAAAGGACTCAAAAACTTGTGCAACTATGCTTTATCTTCAAAATGTAG CAGTATCTACCCATATCAAAAGATGCAAGAAATGTTTGTTAAGAACGATG GAGACTTTGTGAGCatttatttgagaaaattaaatacaaaagatcagaaa aagggtgatcTTGTCAATCCCAGATGTTGTGAAAAAGTTATTTCAACTTT GGAGGACTGTGCTGTTGATGATGTTTGTAAGGCAGTTATCATCAATGGCA TAGAGGAGTACTTTGCATCAAGCAGTATATTTGAGAAATTGTTGAAGAAA ACACCAGCACTAGAAGGAAAGAAATATGAAGAGGATGTATCAATGTTGAG GTATTTGATTCAAACGATCCGGAACTTCAACAAACCCATCGTAGCCGTTA TACGTAAGACAGCGATTGGATTCCCTGCTTCGCTTCTCTCTTTATTTGAT ATGGTTTTTCACGagCGAGAAACAGAGAAAGCTTCACACACCAGCAAACA ATCAAACGTAGGAAGGAAGAAAACGTTGAACAAGCAACCTTCGGAAGATG TCGAGGATAGCGAGGTATCGTGCCCTAGTACAGAAACAGAATGCCAATCT TTTGTGTTTCCAAGGTTGATGGGCTTGACTCAGAATAACGAAAGTCGAAT CATGGGTGAGGACACACGGCTTCTTTCGCCTACAGATTGTACGGAAAACG TCGATTGTTTGAATGAAGCGCCGTTATCGCAACAACTTCGAAATAGCCTT CGTCACATGCGCTCCAATAGTAAGATACAAATTAAACGACGTGGTAGGTC CCAGTCGGAGATCTCAGAGCCAGCTAATGATGAGGAATCAGGCGatgagg aggaggaggaggttGATGACGTAATGTTACCGGCACGTCAATCTAATCAT TTGGAACAGTTAGAACGATTGGAGAGGGAAATTCTACAAGAGAAAGAAAG AACTGAAAAGTATATGAGCGAGCTTTTCTCTTATATGAATTCACTAGacg aatgaaaatgatttttattgaTGATGATGGTTGGAAATAAACGTTTAAAA TGGTTAACAATGCATTTTTACTATATAGTTAGGTTTAACAACAATAActa tttttagttattttttaacaaattatttatttttcttgataCGACGCAGT TGTATTTAGCCTGTAGATAGTTTTTTTGGCTGGTTTTTACGCAATATTTT ATTGGTTTTATTATTAGTGATGTTTTAAccgattttttttgtgattttct gaACAGCCAAGGGTCAAATGGAAGCATGTCAAATTTTGGTTTCcagagta cacgttttttaataagaacttcCAAAATTCTTGGAGCCTTCAGATGTTTT TAACCTTTTGAGTTCAAAGCCTAAAgattttcttaacatgttcttaattt ttgcccattttcctaagaaatctgTAGAGAagtctgtaaagccttaaaat gtcctTGGCTTGTTCTTGGACATTTTTGGTCATCGAAAccgtatgttctt atatagtttgtttttataaaaaacgtgtatgctctCTCTTCCTACCTTGT AATTTTTGTTAAcctttgattgaaaaatttcggaAAGTCTAGCTCTAAAG TACAATATACCAGACAACGTTAGCGAAGTTTTCTGTGTGATCAATTCAAC AGTAAAATATAGGCTTCCACCCTGGCAATTTAATTATACGCCCTTATAAG GGtggttttgttttaaatgtacaGTTGTTATTATTTTGATGGCTATGtag ttttacattttatttGGCTACTTGTGAAATACTGTAATAATATAGATTCA TTTTATggatattttgttttcattttgaagaaatcCTTTGTGTTTAGAAA TTCTGCACTGATAGATCAATTTGAC Run BLAST on NCBI transcript from alignment at scaffold_139:188518..194742+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047871 ID=TCONS_00047871|Name=TCONS_00047871|organism=Clytia hemisphaerica|type=transcript|length=6225bp|location=Sequence derived from alignment at scaffold_139:188518..194742+ (Clytia hemisphaerica) ATTTGACGGTCAATAACTATAAAATACTGGAATGTATATGTTTGTAATAC
ATTTTTGTATCttatattataaattaaaaaaactcttACATACTTCTATC
GTACTAATCAAGCTATAATTAGTACATAAACCCCCGGTATTTAAAGTGAA
AGAACAATAGACAACTCGGAGTCGATTGGTTTTCCTCTGTACAACAAAAA
TGGCTGATTCGTTTGATAGAGCGAACTTCGCGAaagtctttgttttgatg
tgacTGAATTTTTATCGGAgttcaaattttacaaaacttttcaaCTGTAT
TTCAACCTAAAACCCTTGGGATACATTTTATATATGTAAAAAGTGTGAtg
atatttcaatgaaaatgactCGATTACAACAAAGACGAAACAGTTCCTGC
AATTGTGGGAAAACAACAAAAGAGAGCAAGCCTTTTGTCACGAAAAATAA
AACCTACGAAACTCGCTCTGGTGTGCAAAGAAAACAAGACGTCTCGAATG
GCTTTCAAAAGAATTTGCCCGTAAACTGTAGCACACTAAATCTGAGAGGa
aaagttttcattaaaaagatgGAGGGTCCTATCGCAACACTACCACCGCT
GAGAAATGGCAAAATTAATGGAGATGGAACAGTAGAATTGATTAAAAGTC
CGACATCTAAAGTTTGTAAAAAGACTCGTAAAGCCGTCGTTCAAAATGCG
AAAGGAAATGGGCTGATCGATAATACTCTAGAAGAAATGATCACTGCTAA
ACTCAAGGTAGATTTTATTGACATTAAtgctgatattttgaaaaaagaag
acactgcAATTTCGAATGGTATTCTGACAGATGAAATAGTAAAATCTCTC
CAAAACGAAAcgaaccaaaacaaagaaattcaaaatggcgacttAGTAGA
AAGAAATGGTGTGGATCAAATTTTGTTGAATGGAGAAGAAATAAAAGTAA
AGGAGGAGATTGTAAGTAATGGAAATATTGAAAACACTGAGAACAATCTT
AatctaaaatgtcaatatgagaACCTAGATTTAGAAAATGATGAGGATGT
AAAACAACCAAAGAAAAAGAGACTAAAAAGAAGGACtgcttttgaaattt
tcatgaataACACTATTGATCTAAGTGGAATGACTGTCAAAAGAACTAGA
AAAGCACCATCTTCTTTTTCACCTGAATCCCCCCGTAAGGTAAAATCAAA
TGATGTTCCACCACAGGCACAACAAATAAAGCTTCCTGTAGATGAACCGG
TTCCATATAAACCGGTAATACAATTGACAAAAAAAGGACTACCGTTTAAG
AAAAAAGGGAGAAAGCCAAGACTCAAAGGTCCAGTAGAACATTACTTGGA
TGTAATTGTTAGAAACAAGttaaaagaaaatgtttcaaatagtAATTGTG
ATGACGATGATAATAAAGGATCTGAAATAGATCTAGACTCAAATAATATT
ACAACCAAAGATATTGTTGAAATTCCTGATAAACCTGAAGAAATTCTAGA
AAACAATCCTCCCTCAGactcatttaaaacaaaaactgtTGAACAGCTGC
TATTGCCAATATGTAATGCAAAGCCAATCAAAAATCGTTACCATGatcta
aaacgaaaaaatattatgaaaaaacAGCTTagtaaaaagagaaaaacttt
CAGTAAAATGGACACTGATGAATTTTCTAGTCCTATCATAAGTGTTTTAG
GATATCGTACTCAcaaattaaagaaagaaatgCTTGTCCAGTTTGAAAAT
GGAACTAGTAATTGGATTGATTACCATGAGAAGGAATTCAATGTTACAAA
AATGAAGGAATATTATGAGCACACTGAACAATCTTTACCGATCATACATC
GGCTTGGGTATCAAACATTTTTCCCTTCATCATCTATCTCTTCATTCTCT
GACCAAGACTTGTCATCAAGTGATGAATCTGATCTTGATGATGTTTTCTT
TAGACCGTTGCCAGCATTGGGGAAGAAATGTGACCAGCTTTTATCAAATA
AGGAAGCTCTACAGTCAACAAATAAAGAGGTAGAAATGAGTCTCGATTCA
GAAAAAGGACTCAAAAACTTGTGCAACTATGCTTTATCTTCAAAATGTAG
CAGTATCTACCCATATCAAAAGATGCAAGAAATGTTTGTTAAGAACGATG
GAGACTTTGTGAGCatttatttgagaaaattaaatacaaaagatcagaaa
aagggtgatcTTGTCAATCCCAGATGTTGTGAAAAAGTTATTTCAACTTT
GGAGGACTGTGCTGTTGATGATGTTTGTAAGGCAGTTATCATCAATGGCA
TAGAGGAGTACTTTGCATCAAGCAGTATATTTGAGAAATTGTTGAAGAAA
ACACCAGCACTAGAAGGAAAGAAATATGAAGAGGATGTATCAATGTTGAG
GTATGTATCATTCTTAATAATGTCCTTTGCCTTTAATTAAAAAAGAGTGG
TCAAATGCTATTGACTCTGGCCCTGCTAATTTTTAGATTTGAGATTACTT
TAGGCATACTAACTTTCGCAAGGACAAAAAATCGCAAAATTTACGACACT
TACTTTCGCAAATTTAACGGAAAAATAATTTTTTCAAGCATTAACTTTCG
TAAATCAAGACTTAAAATTGAATATTTTCACATGAAAAAATGGCTTAGAG
GCACGAATACTTCTGGTATTGGCTTGAAACATTGGTCCTTTGACTTATTA
GTCTTTTAGCAAGCAGGCTAAAAAGTTCCCTAAAAGTTACATTTTATTCA
AAGGTTGAAGTTTTACATAAACTTTCGCGAATGGCCCTTCCTAGAATTTT
TAAAGACATTTATTTTCGCAAAACAGGTCGAAATTCACGAAAATGGCAAA
AGTTTCTGCTTGCGAAAGTTTCTGTCTAAATTAGTACATATAAGAATTTT
AAAATTTGATCAATTTTGTTGTAGCTTTGAAGACTGCACATTTTTTTCCA
TTTCATTATCATATTTTTGGTGTAGACACAAAATTTGGACACATGGTATC
TCGAAATACTTTACTGTGGTTTCGAGAAATAATTTCTCTTCAATTTTTAT
TAATCTTCATTCTATTCAAATTTTCTTTTTGCAATGGCTTAGTTGTCTTG
TAGTGTTTTCTGAATATCCTCCTTCTTGACCTTAGTATAGAGGCTACTGT
TCTTTCTTTTAACTTCTTTGGTATTTTTGGTTCTCTTCTGAAAACTTAGT
TGTGAAAAAGGATGAATATAGATTTCACAGCCAGGGTTGTTATTTTATAA
AAGCAAATAAAAACTGAGAGAGGTTTTGTCTCTTTGACTCATCCATGCTT
GAATTCTTTTCAAGGGAGAGACATATTATTGAAATTTGTAGGTTCAAGGT
CCTACTTTCTCTCTACTTGAGTAATCTATTcacatttttttcacattttt
acagaacttttttcatttctttttatgatttttctctTCTTAGTTAGAGA
GGGATGAAATCTATAAGTCTTTCATTGCTTTCAAAGAAAGGTGCAAGTTT
TAACTCTCTTTTACAGTAAGGAGCAATGTTTACGTTGTAttataaaacct
ttaagttgaAAAAAAGAATTGCAAGCTgactattttttgttttgattaga
aAGGGCTGTTATCGAAAAATGAATGAGAGAGCCTTGATTACTTGATTAGT
GTCGAGTTACCATTTCCTCTTTTTACAGTCATACTTCATGCCTCactatt
tgaaatttctcatccATTGTTGATTTTAATGACCTATATTTATTACGAAA
AAGTTGGTAGTTATAAGCAGTTAATTACATTTATCATTTCATATCTATTT
GAATTGAATGTCCATTCAAAAGAATGTTCTGTGTATTACTATATGGAACG
ATTATATCTGAAGTGTGTGCGAAAGCTCTCTCATTTTATTATGTATTGAT
TTTACagcttttatttgaaatgtaTATTATGGATTTGTGAATCATGTCTT
GCTAGCTCAAGTTCTCTCTTGTTTTTTCCTCCCAATGAGAACTTTTATGG
TTCTAACTTTATTCTCATCATGGTCTATTCGTtgcaaatcgaaagtgaaa
gtcagtcgcttgaaaacgaaagtaaacaACGCAATCGCGTCAAACAAAAT
CATTCCGAGAAAAAGTTGCGAGTCAGATCTAAGACGGAAgttatacattt
ttttgtttggattATTTTTACAGGTATTTGATTCAAACGATCCGGAACTT
CAACAAACCCATCGTAGCCGTTATACGTAAGACAGCGATTGGATTCCCTG
CTTCGCTTCTCTCTTTATTTGATATGGTTTTTCACGaggtaaagattttt
ttatgataacGTTTTTATCAATCATTCCAAAATCAGCTGATAATactaaa
atttttatataattccTCTTTTCACTCCAAGTATAAACATTGGAAGTATT
AAGGGGATTTTTCTCTTTTCGTGTATTTTAATTCGTCGTTAAAATATTGT
AGTTGTTATGAcgattcacttttttgaatgaTTGTAATTAAATGACCAAG
CACGTTATTGCAAGATGTCTATTCTAATGACCGCATTGTTATTTCAAACG
ACCCCATAAATAGTGTAATGACCCTTGAGATTTATGAAGCCGGAAAATCT
TGTCATAGAGAGAGTGTATTTGCACGTGGTACTCATcaaatgtttatttt
ctgaaaggTTTTTGGTATCAGGATTTTCGACGCACGCCGTCTTTTTCTAT
GACGGTAAACTGGTTATCCACGCTAAGTATTTGTATTGTTAATATTAATA
CTTTTAAATCCTTTATTATGGCATGTTAAAAGTAAAGCATTTTCCTCTAC
TTTTATTTCGAACAGCGAGAAACAGAGAAAGCTTCACACACCAGCAAACA
ATCAAACGTAGGAAGGAAGAAAACGTTGAACAAGCAACCTTCGGAAGATG
TCGAGGATAGCGAGGTATCGTGCCCTAGTACAGAAACAGAATGCCAATCT
TTTGTGTTTCCAAGGTTGATGGGCTTGACTCAGAATAACGAAAGTCGAAT
CATGGGTGAGGACACACGGCTTCTTTCGCCTACAGATTGTACGGAAAACG
TCGATTGTTTGAATGAAGCGCCGTTATCGCAACAACTTCGAAATAGCCTT
CGTCACATGCGCTCCAATAGTAAGATACAAATTAAACGACGTGGTAGGTC
CCAGTCGGAGATCTCAGAGCCAGCTAATGATGAGGAATCAGGCGatgagg
aggaggaggaggttGATGACGTAATGTTACCGGCACGTCAATCTAATCAT
TTGGAACAGTTAGAACGATTGGAGAGGGAAATTCTACAAGAGAAAGAAAG
AACTGAAAAGTATATGAGCGAGCTTTTCTCTTATATGAATTCACTAGacg
aatgaaaatgatttttattgaTGATGATGGTTGGAAATAAACGTTTAAAA
TGGTTAACAATGCATTTTTACTATATAGTTAGGTTTAACAACAATAActa
tttttagttattttttaacaaattatttatttttcttgataCGACGCAGT
TGTATTTAGCCTGTAGATAGTTTTTTTGGCTGGTTTTTACGCAATATTTT
ATTGGTTTTATTATTAGTGATGTTTTAAccgattttttttgtgattttct
gaACAGCCAAGGGTCAAATGGAAGCATGTCAAATTTTGGTTTCcagagta
cacgttttttaataagaacttcCAAAATTCTTGGAGCCTTCAGATGTTTT
TAACCTTTTGAGTTCAAAGCCTAAAgattttcttaacatgttcttaattt
ttgcccattttcctaagaaatctgTAGAGAagtctgtaaagccttaaaat
gtcctTGGCTTGTTCTTGGACATTTTTGGTCATCGAAAccgtatgttctt
atatagtttgtttttataaaaaacgtgtatgctctCTCTTCCTACCTTGT
AATTTTTGTTAAcctttgattgaaaaatttcggaAAGTCTAGCTCTAAAG
TACAATATACCAGACAACGTTAGCGAAGTTTTCTGTGTGATCAATTCAAC
AGTAAAATATAGGCTTCCACCCTGGCAATTTAATTATACGCCCTTATAAG
GGtggttttgttttaaatgtacaGTTGTTATTATTTTGATGGCTATGtag
ttttacattttatttGGCTACTTGTGAAATACTGTAATAATATAGATTCA
TTTTATggatattttgttttcattttgaagaaatcCTTTGTGTTTAGAAA
TTCTGCACTGATAGATCAATTTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00047871-exon-scaffold_139-1491911889:188518..190917 | TCONS_00047871-exon-scaffold_139-1491911889:188518..190917 | Clytia hemisphaerica | exon |
TCONS_00047871-exon-scaffold_139-1510915933:188518..190917 | TCONS_00047871-exon-scaffold_139-1510915933:188518..190917 | Clytia hemisphaerica | exon |
TCONS_00047871-exon-scaffold_139-1575043694:188518..190917 | TCONS_00047871-exon-scaffold_139-1575043694:188518..190917 | Clytia hemisphaerica | exon |
TCONS_00047871-exon-scaffold_139-1491911889:192691..192805 | TCONS_00047871-exon-scaffold_139-1491911889:192691..192805 | Clytia hemisphaerica | exon |
TCONS_00047871-exon-scaffold_139-1510915933:192691..192805 | TCONS_00047871-exon-scaffold_139-1510915933:192691..192805 | Clytia hemisphaerica | exon |
TCONS_00047871-exon-scaffold_139-1575043694:192691..192805 | TCONS_00047871-exon-scaffold_139-1575043694:192691..192805 | Clytia hemisphaerica | exon |
TCONS_00047871-exon-scaffold_139-1491911889:193333..194742 | TCONS_00047871-exon-scaffold_139-1491911889:193333..194742 | Clytia hemisphaerica | exon |
TCONS_00047871-exon-scaffold_139-1510915933:193333..194742 | TCONS_00047871-exon-scaffold_139-1510915933:193333..194742 | Clytia hemisphaerica | exon |
TCONS_00047871-exon-scaffold_139-1575043694:193333..194742 | TCONS_00047871-exon-scaffold_139-1575043694:193333..194742 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_139 | supercontig | scaffold_139:188518..194742 + |
Blast
The following BLAST results are available for this feature:
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