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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048804 ID=TCONS_00048804|Name=TCONS_00048804|organism=Clytia hemisphaerica|type=transcript|length=1216bp
ttaaaactcaaaaattagcCTATAGGaaggctttttcaaaattttagatg
ttcttataaaatgtacTTCCAATCTATTTAAGTTTCTGCTTCCTTGAACC
TGTCAAGAGTTGTCTACGTTTGATGTCGCTCGAAACATAGCTTTGATTGA
GTCTCGAAAATCTTTCATTCTCGTAAATTGTTGTACTCGCTCTGATTAAG
TCTCGAAAATCTTTTATTCTCGTAAAGTTGTATTCGTTGGACGTTGCTCG
AAACATAGCTTTGATTGAGTCTCGAAAATCTTTCATTCTCGTAATGCAGA
TTATTGGGTTGACGATAGCAGCCACGGGCATTGGTAGGTTGAAAAGAAAT
CTCATGGAAAGACTGGGTTGGAAAGTATGTTTTGCATAGTAAATCCTGAT
ACTAAAATCTGTCACCATGAGGAAAAATATAACCGTAAGCTGTGTCAGAA
GGATGAGTTTACACGTGCTCAAAGCgcgtttttcattttctgcgTTTTGA
TTGGACGAGGCTGATACAATTGATTGGGTCTTACCATTTCCCCGCGTTTT
TAACGCGTTCCAGACGCGGTTGTATATAATTGTAAGCCCCACTGTGACAA
CAAAACTCATTACGGTATTAACGATGAGAGTTGTTAGCTTGTCCAAGAAA
AATAAAGTGATAGTCATTAAAGCTAGCACCCATACGATTCCAATGTAATA
CAAGAAGTGTTTGGTTGAGATGTTCCCTCGGTAGACGATCGGATCAGTTA
TTGCTTTGTACCGATCGTAAGATAAACATATCGTTGTGAAAAATCCGGCG
TTTAGGATCGGGGTTCCTATATACGACACAAGGTTCAAAGTACGGAATAA
CTTCTGGTCATCAAACGCCAATGAAGCgtatgacgtcatcggaaagcATA
CAAAACTAGCTGCAAGGTCACACATACACAGAtgaattaacaaaaaattg
aacatttttcgAAGCCTTTTGAGAGGATCTTTGATAACTGCCGAAATAAC
CAATGTGTTTAAAACAATACTGATGATTGCCGCCAAACCGAAAATTGCTC
CGATGGAATACTTGAATAAGTTGAAATTCATTTTATGAGCTCTACACAGC
AGCGACGATGTCCTCTTATTTGTAGTTGGTTAAATTTTGCAGACGTCTTG
TtgtttccaaaaatcaaaataaagcacaacaaaaatttgaaaaactcacC
ACACcaaatcaatttt Run BLAST on NCBI protein sequence of TCONS_00048804-protein >TCONS_00048804-protein ID=TCONS_00048804-protein|Name=TCONS_00048804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
MNFNLFKYSIGAIFGLAAIISIVLNTLVISAVIKDPLKRLRKMFNFLLIH
LCMCDLAASFVCFPMTSYASLAFDDQKLFRTLNLVSYIGTPILNAGFFTT
ICLSYDRYKAITDPIVYRGNISTKHFLYYIGIVWVLALMTITLFFLDKLT
TLIVNTVMSFVVTVGLTIIYNRVWNALKTRGNGKTQSIVSASSNQNAENE
KRALSTCKLILLTQLTVIFFLMVTDFSIRIYYAKHTFQPSLSMRFLFNLP
MPVAAIVNPIICITRMKDFRDSIKAMFRATSNEYNFTRIKDFRDLIRAST
TIYENERFSRLNQSYVSSDIKRRQLLTGSRKQKLK Run BLAST on NCBI transcript from alignment at scaffold_146:324463..325678 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048804 ID=TCONS_00048804|Name=TCONS_00048804|organism=Clytia hemisphaerica|type=transcript|length=1216bp|location=Sequence derived from alignment at scaffold_146:324463..325678 (Clytia hemisphaerica)
aaaattgatttgGTGTGgtgagtttttcaaatttttgttgtgctttattt
tgatttttggaaacaACAAGACGTCTGCAAAATTTAACCAACTACAAATA
AGAGGACATCGTCGCTGCTGTGTAGAGCTCATAAAATGAATTTCAACTTA
TTCAAGTATTCCATCGGAGCAATTTTCGGTTTGGCGGCAATCATCAGTAT
TGTTTTAAACACATTGGTTATTTCGGCAGTTATCAAAGATCCTCTCAAAA
GGCTTcgaaaaatgttcaattttttgttaattcaTCTGTGTATGTGTGAC
CTTGCAGCTAGTTTTGTATgctttccgatgacgtcatacGCTTCATTGGC
GTTTGATGACCAGAAGTTATTCCGTACTTTGAACCTTGTGTCGTATATAG
GAACCCCGATCCTAAACGCCGGATTTTTCACAACGATATGTTTATCTTAC
GATCGGTACAAAGCAATAACTGATCCGATCGTCTACCGAGGGAACATCTC
AACCAAACACTTCTTGTATTACATTGGAATCGTATGGGTGCTAGCTTTAA
TGACTATCACTTTATTTTTCTTGGACAAGCTAACAACTCTCATCGTTAAT
ACCGTAATGAGTTTTGTTGTCACAGTGGGGCTTACAATTATATACAACCG
CGTCTGGAACGCGTTAAAAACGCGGGGAAATGGTAAGACCCAATCAATTG
TATCAGCCTCGTCCAATCAAAAcgcagaaaatgaaaaacgcGCTTTGAGC
ACGTGTAAACTCATCCTTCTGACACAGCTTACGGTTATATTTTTCCTCAT
GGTGACAGATTTTAGTATCAGGATTTACTATGCAAAACATACTTTCCAAC
CCAGTCTTTCCATGAGATTTCTTTTCAACCTACCAATGCCCGTGGCTGCT
ATCGTCAACCCAATAATCTGCATTACGAGAATGAAAGATTTTCGAGACTC
AATCAAAGCTATGTTTCGAGCAACGTCCAACGAATACAACTTTACGAGAA
TAAAAGATTTTCGAGACTTAATCAGAGCGAGTACAACAATTTACGAGAAT
GAAAGATTTTCGAGACTCAATCAAAGCTATGTTTCGAGCGACATCAAACG
TAGACAACTCTTGACAGGTTCAAGGAAGCAGAAACTTAAATAGATTGGAA
gtacattttataagaacatctaaaattttgaaaaagccttCCTATAGgct
aatttttgagttttaa Coding sequence (CDS) from alignment at scaffold_146:324463..325678 >TCONS_00048804 ID=TCONS_00048804|Name=TCONS_00048804|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_146:324463..325678 (Clytia hemisphaerica)
ATGAATTTCAACTTATTCAAGTATTCCATCGGAGCAATTTTCGGTTTGGC
GGCAATCATCAGTATTGTTTTAAACACATTGGTTATTTCGGCAGTTATCA
AAGATCCTCTCAAAAGGCTTcgaaaaatgttcaattttttgttaattcaT
CTGTGTATGTGTGACCTTGCAGCTAGTTTTGTATgctttccgatgacgtc
atacGCTTCATTGGCGTTTGATGACCAGAAGTTATTCCGTACTTTGAACC
TTGTGTCGTATATAGGAACCCCGATCCTAAACGCCGGATTTTTCACAACG
ATATGTTTATCTTACGATCGGTACAAAGCAATAACTGATCCGATCGTCTA
CCGAGGGAACATCTCAACCAAACACTTCTTGTATTACATTGGAATCGTAT
GGGTGCTAGCTTTAATGACTATCACTTTATTTTTCTTGGACAAGCTAACA
ACTCTCATCGTTAATACCGTAATGAGTTTTGTTGTCACAGTGGGGCTTAC
AATTATATACAACCGCGTCTGGAACGCGTTAAAAACGCGGGGAAATGGTA
AGACCCAATCAATTGTATCAGCCTCGTCCAATCAAAAcgcagaaaatgaa
aaacgcGCTTTGAGCACGTGTAAACTCATCCTTCTGACACAGCTTACGGT
TATATTTTTCCTCATGGTGACAGATTTTAGTATCAGGATTTACTATGCAA
AACATACTTTCCAACCCAGTCTTTCCATGAGATTTCTTTTCAACCTACCA
ATGCCCGTGGCTGCTATCGTCAACCCAATAATCTGCATTACGAGAATGAA
AGATTTTCGAGACTCAATCAAAGCTATGTTTCGAGCAACGTCCAACGAAT
ACAACTTTACGAGAATAAAAGATTTTCGAGACTTAATCAGAGCGAGTACA
ACAATTTACGAGAATGAAAGATTTTCGAGACTCAATCAAAGCTATGTTTC
GAGCGACATCAAACGTAGACAACTCTTGACAGGTTCAAGGAAGCAGAAAC
TTAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048804-exon-scaffold_146-1491911889:324463..325678 | TCONS_00048804-exon-scaffold_146-1491911889:324463..325678 | Clytia hemisphaerica | exon |
| TCONS_00048804-exon-scaffold_146-1510915933:324463..325678 | TCONS_00048804-exon-scaffold_146-1510915933:324463..325678 | Clytia hemisphaerica | exon |
| TCONS_00048804-exon-scaffold_146-1575043694:324463..325678 | TCONS_00048804-exon-scaffold_146-1575043694:324463..325678 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:324463..325678 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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