TCONS_00048806 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048806
Unique NameTCONS_00048806
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length540

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048806 ID=TCONS_00048806|Name=TCONS_00048806|organism=Clytia hemisphaerica|type=transcript|length=540bp
ATCGCATTCCGCAAATAAACGTCATCGTATCTTTCCAATCAAAATGAATA
ACATTACAGTTGAAATGTTGATTGATAGTGGAAGCGATTTAAACATTATC
AGTCAAGAAACTCTAACCAAAATGAACTTTGAACCCAAACGTTTTCCATA
CAAGGGGCAAGCTAAATCGTTTAATGCTCCAATTCCATTTAAAGAATGTT
GTTATGTAAAAATCAGGGCAGGGAACTCTGAAACAAATGCCCGATTTATC
ATCAATCCTCACCCATCCATTACTATCCTTGGGTATGACTCGTCAATTGA
ATTGAACCTACTTCGTGTCGGACCTGATCCAGTTGCAACAACTACCACTA
CAGAAAGAGTTAATAACATTACTGCTAATTCTTCAAAGATGAATGACATT
ATTACCGAATATAGTGATCGATTTCAAGGCTTGGGTAAATTAAAAGGTGT
TTCATTGAACATTAAGACTGACCCATCTATTCAACCAGTTGCACAGAAAC
CTCGACGGCTTCCAATATTAATGCGAAAGGAAGTGGACAC
Run BLAST on NCBI

protein sequence of TCONS_00048806-protein

>TCONS_00048806-protein ID=TCONS_00048806-protein|Name=TCONS_00048806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
SHSANKRHRIFPIKMNNITVEMLIDSGSDLNIISQETLTKMNFEPKRFPY
KGQAKSFNAPIPFKECCYVKIRAGNSETNARFIINPHPSITILGYDSSIE
LNLLRVGPDPVATTTTTERVNNITANSSKMNDIITEYSDRFQGLGKLKGV
SLNIKTDPSIQPVAQKPRRLPILMRKEVD
Run BLAST on NCBI

transcript from alignment at scaffold_146:365669..366208

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048806 ID=TCONS_00048806|Name=TCONS_00048806|organism=Clytia hemisphaerica|type=transcript|length=540bp|location=Sequence derived from alignment at scaffold_146:365669..366208 (Clytia hemisphaerica)
GTGTCCACTTCCTTTCGCATTAATATTGGAAGCCGTCGAGGTTTCTGTGC
AACTGGTTGAATAGATGGGTCAGTCTTAATGTTCAATGAAACACCTTTTA
ATTTACCCAAGCCTTGAAATCGATCACTATATTCGGTAATAATGTCATTC
ATCTTTGAAGAATTAGCAGTAATGTTATTAACTCTTTCTGTAGTGGTAGT
TGTTGCAACTGGATCAGGTCCGACACGAAGTAGGTTCAATTCAATTGACG
AGTCATACCCAAGGATAGTAATGGATGGGTGAGGATTGATGATAAATCGG
GCATTTGTTTCAGAGTTCCCTGCCCTGATTTTTACATAACAACATTCTTT
AAATGGAATTGGAGCATTAAACGATTTAGCTTGCCCCTTGTATGGAAAAC
GTTTGGGTTCAAAGTTCATTTTGGTTAGAGTTTCTTGACTGATAATGTTT
AAATCGCTTCCACTATCAATCAACATTTCAACTGTAATGTTATTCATTTT
GATTGGAAAGATACGATGACGTTTATTTGCGGAATGCGAT

Coding sequence (CDS) from alignment at scaffold_146:365669..366208

>TCONS_00048806 ID=TCONS_00048806|Name=TCONS_00048806|organism=Clytia hemisphaerica|type=CDS|length=537bp|location=Sequence derived from alignment at scaffold_146:365669..366208 (Clytia hemisphaerica)
GTCCACTTCCTTTCGCATTAATATTGGAAGCCGTCGAGGTTTCTGTGCAA
CTGGTTGAATAGATGGGTCAGTCTTAATGTTCAATGAAACACCTTTTAAT
TTACCCAAGCCTTGAAATCGATCACTATATTCGGTAATAATGTCATTCAT
CTTTGAAGAATTAGCAGTAATGTTATTAACTCTTTCTGTAGTGGTAGTTG
TTGCAACTGGATCAGGTCCGACACGAAGTAGGTTCAATTCAATTGACGAG
TCATACCCAAGGATAGTAATGGATGGGTGAGGATTGATGATAAATCGGGC
ATTTGTTTCAGAGTTCCCTGCCCTGATTTTTACATAACAACATTCTTTAA
ATGGAATTGGAGCATTAAACGATTTAGCTTGCCCCTTGTATGGAAAACGT
TTGGGTTCAAAGTTCATTTTGGTTAGAGTTTCTTGACTGATAATGTTTAA
ATCGCTTCCACTATCAATCAACATTTCAACTGTAATGTTATTCATTTTGA
TTGGAAAGATACGATGACGTTTATTTGCGGAATGCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031025XLOC_031025Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048806-proteinTCONS_00048806-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048806-exon-scaffold_146-1491911889:365669..366208TCONS_00048806-exon-scaffold_146-1491911889:365669..366208Clytia hemisphaericaexon
TCONS_00048806-exon-scaffold_146-1510915933:365669..366208TCONS_00048806-exon-scaffold_146-1510915933:365669..366208Clytia hemisphaericaexon
TCONS_00048806-exon-scaffold_146-1575043694:365669..366208TCONS_00048806-exon-scaffold_146-1575043694:365669..366208Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_146supercontigscaffold_146:365669..366208 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.981169	1.27118	2.4715	0.670273	5.56945	4.4516	2.11134	2.9771	2.08294	4.54472	8.70178	2.44856	1.69166	1.761	0.821099	0.502141	1.5655	0.521914	4.23688	4.0115	1.84519	2.62397	1.04865	2.0754	1.34816	2.90115	2.36819	4.50871	1.3999	0.725509
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
IPR001969Aspartic_peptidase_AS
IPR001995Peptidase_A2_cat
Vocabulary: Molecular Function
TermDefinition
GO:0004190aspartic-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004190 aspartic-type endopeptidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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