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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048927 ID=TCONS_00048927|Name=TCONS_00048927|organism=Clytia hemisphaerica|type=transcript|length=2115bpRun BLAST on NCBI protein sequence of TCONS_00048927-protein >TCONS_00048927-protein ID=TCONS_00048927-protein|Name=TCONS_00048927-protein|organism=Clytia hemisphaerica|type=polypeptide|length=644bp VALESRDKKEPSFFVLGRFCSQRCVGAYASKRRTQLIQQQLESGERPPTKRun BLAST on NCBI transcript from alignment at scaffold_148:207125..214623- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048927 ID=TCONS_00048927|Name=TCONS_00048927|organism=Clytia hemisphaerica|type=transcript|length=7499bp|location=Sequence derived from alignment at scaffold_148:207125..214623- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_148:207125..214623- >TCONS_00048927 ID=TCONS_00048927|Name=TCONS_00048927|organism=Clytia hemisphaerica|type=CDS|length=25155bp|location=Sequence derived from alignment at scaffold_148:207125..214623- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048927 vs. Swiss-Prot (Human)
Match: LMBL3 (Lethal(3)malignant brain tumor-like protein 3 OS=Homo sapiens GN=L3MBTL3 PE=1 SV=2) HSP 1 Score: 380.948 bits (977), Expect = 5.629e-120 Identity = 209/563 (37.12%), Postives = 309/563 (54.88%), Query Frame = 2
Query: 305 GFCWETYLQITATKSVPVEAFFKEYDEQEILPQSTTNQFEQGMKLECIDPKHQSIICCCTVVEVQGARLRLNFDGWPANYDFWINSNSFFLHPCGWCSKNQQKLQPPKDIDPKDFEWSTYLMKTQSKAAPANLFFD-TPPVSRHAFRISMKLEAIDRKNPDLVCVASVANTIGDQILIHFDEWDDLYDYWCREDNPYIHPMGWCQKNQIALV-PPTDEMVGKFVWKDYLNDSDCIAAPDEVFKEPKKLLFVIGDKMEVIDPRNPTLCRVATVNRAEDFKVQIHFDGWPSMYDWWFDFDSMDLHPVGWCQKTGHVLEPPPSGQDATSP-----CGIQGCRGVGHIKGAKYTTHHTSFGCPYTSQNIHRTTSPVVDRLVMDSEEVFAGSTPSNKSNENSPTSTVFPDSTTNYXXXXXXXXXXXXXXXXXXXXXXXXXXDEVSSSTNFLHEEQITKHEYSPMDIPKKIRST---HIPAGLYGRNTYFERKSQAIP------------WNTQEVGEFLSRI-GYAEYVPIFKDNQIDGQALLLLSQADLVHHLNLKLGPALKIYSEI 1924
+CW +YL+ +VP + F E + P + N F+ GMKLE +DP+HQS+ C TV EV G R++L+FDG+ YDFW+N+++ +HP GWC K KL PPK ++F W TYL +++AAP +LF + V FR+ MKLEA+D+KNP +CVA+V + + ++ L+HFD WD+ YDYWC +P+IHP+GWC++++ L+ PP V F W YL +++ + AP FK F K+EV+D RNP RVATV +D +V++HFDGW + YD+W D DS D+HPVGWC KTGH L+PP S + C GC+G+GH K A++ H++ CPY+ N+++ DR+ P S E P S FP N + + + K + S HE + + E P + RS + + +E++S+ +P W+T EV EF+ + G E+ +FKD QIDG+A LL++Q D+V +++KLGPALKI++ I
Sbjct: 231 AWCWASYLEEEKAVAVPAKLF----KEHQSFPYNK-NGFKVGMKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSDCYDFWVNADALDIHPVGWCEKTGHKLHPPKGYKEEEFNWQTYLKTCKAQAAPKSLFENQNITVIPSGFRVGMKLEAVDKKNPSFICVATVTDMVDNRFLVHFDNWDESYDYWCEASSPHIHPVGWCKEHRRTLITPPGYPNVKHFSWDKYLEETNSLPAPARAFKVKPPHGFQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVGWCSKTGHPLQPPLSPLELMEASEHGGCSTPGCKGIGHFKRARHLGPHSAANCPYSEINLNK------DRIF-----------PDRLSGEMPPASPSFP---RNKRTDANESSSSPEIRDQHADDVKEDFEERTESEMRTSHEARGAREE--PTVQQAQRRSAVFLSFKSPIPCLPLRWEQQSKLLPTVAGIPASKVSKWSTDEVSEFIQSLPGCEEHGKVFKDEQIDGEAFLLMTQTDIVKIMSIKLGPALKIFNSI 766 The following BLAST results are available for this feature:
BLAST of TCONS_00048927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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