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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048987 ID=TCONS_00048987|Name=TCONS_00048987|organism=Clytia hemisphaerica|type=transcript|length=3115bpRun BLAST on NCBI protein sequence of TCONS_00048987-protein >TCONS_00048987-protein ID=TCONS_00048987-protein|Name=TCONS_00048987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1038bp GTNGPIWMNGLHPDTIGQTKTVPVCVRFQSACCKDTFNIDVKKCQEGNEERun BLAST on NCBI transcript from alignment at scaffold_15:280817..299813+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048987 ID=TCONS_00048987|Name=TCONS_00048987|organism=Clytia hemisphaerica|type=transcript|length=18997bp|location=Sequence derived from alignment at scaffold_15:280817..299813+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_15:280817..299813+ >TCONS_00048987 ID=TCONS_00048987|Name=TCONS_00048987|organism=Clytia hemisphaerica|type=CDS|length=52938bp|location=Sequence derived from alignment at scaffold_15:280817..299813+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00048987 vs. Swiss-Prot (Human)
Match: VWDE (von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4) HSP 1 Score: 168.703 bits (426), Expect = 3.009e-42 Identity = 120/463 (25.92%), Postives = 207/463 (44.71%), Query Frame = 1
Query: 1777 DGEDAFYFYDPPQPNGT----LPSFPTPNGITEQQADQECDQILRQSDIGKVCLKMIPDLGIDQYKHSCKFDAMVLDDLNAAKFSSLGVLKNECEEKALKNLSLWETGQNGNLQPPQAVGNAL----CPSDCSGKGKCVNSTCVCDAGYLSTDCSIQTGDKPTLEKVAFNGLCDIRNKDCLRTRVVGKNFVNSPKLACQTNKLKFTTDHGIDPTFNGESTVQKSQLLSFAELTCDIPNVPVDIMFSSTQKGIPVGGFDIRLSNDGTSFTSQSSQFVIYDSKCLICDAASHN-CRWKDDSCRVNNYCFANGESHPTDWCQKC---VGQNTFTARKDNLAPVFRT-STPYKVFKHARMNFTIPVSDPEQKRMTYEFVGDSYGMEISSVGILTWTPGGENRTYTVTIKATDICGNSSQASYDIEVVHCPCESSNGAAC----KWTSNKGDFSCVCPSGCTGKYCTV 3114
D E+ YF+ PS+PTP+G+TE C + L S IG++CL + +D C D ++ DDL+ A+ + + +L+NECE++ + E G+ + ++ + L CP+ CSG G+C+ C C + S DCS P + ++ G CD++ +C+ RV GK F P + C+ KL++ + + GE ++ + + C +P G P G + +++SNDG F S VIYD C +C ++ C K++ C ++ C+ G+ +PT C C + + T++ ++N PV + + F + DPE + + G +SS G+ W T +T++ D C ++ + ++ V C C NG +C ++ G + CVC G G C V
Sbjct: 771 DLEELTYFFPEDHAEDVQQEFFPSWPTPSGLTEYSTLTLCQETLANSSIGRLCLAFLGKR-LDSVIEMCVKDVLLKDDLSWAE-AGVALLENECEKRIV------EEGKYNTEEYGTSIEDILSVLKCPNLCSGNGQCMEWGCACSPSFSSYDCSDSYDKAPEITELGNAGFCDVQKYNCMMVRVFGKGFKELPSIKCEVTKLQYNSSEWMP----GEPIYTQTVFHNSRAVDCQLPTDVQQFDTMDLVGGKPTGKWQLKVSNDGYKF-SNPKITVIYDGACQVCGLYKNDSCTIKENVCIIDGLCYVEGDKNPTSPCLICRPKISRFTWSFLENNQPPVIQALQDKLQTFYGENFEYQFVAFDPEGSDIHFTLDSGPEGASVSSAGLFMWKTDLLT-TQQITVRLNDDCDAETRVTIEVTVKSCDC--LNGGSCVSDRNFSPGSGVYLCVCLPGFHGSLCEV 1217 HSP 2 Score: 137.117 bits (344), Expect = 1.647e-32 Identity = 142/555 (25.59%), Postives = 235/555 (42.34%), Query Frame = 1
Query: 1 GTNGPIWMNGLHPDTI---GQTKTVPVCVRFQ------SACCKDTFNIDVKKCQEGNEEFYVYNLLPAPGCPESYCIGSETQCPEGKLSPNGF----TPG-CTDQY-----PRLSGIPTVTVDQKVLNFTCKFTPQYPNSNAKHQVLWYGAPPNANRKLLKKETLQGTAHQSYLYNKQAEDLTFLSMQDIYCEVHSYFANSATVTDKK-RSDFFYAGIKISPQTMILKESDGPKDITFKTTVPITCGPGIT---SCKLVIEVAQTVK-------DFVLSFCTVSFDNGGPGQVKTLS-----VDAKRDFLDDGDKTLKITFSIQRRLRLSEWWINHESIPE-VTVNTQDVATGQCQSWGDPHIVPFNEITTYYDHMRVGDYILAKSNARLFEVQTRSFQCGT----VACNCAVAVREGDDVMIVDSCRTGIPRAR---FASTVEPQPGSIMERSTNGKQFTLKFPSGSQVIVDIFRWFAFSDYYWLFTITVLVPPEDYRNTSGLCGNWDQIIXXXXXXXXXXMKSKDGTVYEVAPRTIAPTGFTESWKLSPGTSL 1536
GT PIW++ +T+ G+ K + C +Q CC + V+ C GN F VY L P GC YC + + + +L P G T G C Q P +G P V V+ C+ + P + K+ V ++ A + + +K+E Q T Q++ + + + I+C +F + V S F+AG K+ P+ + E + ++TVPI C CK+ +++ + + LS C V T S A DF DGD+ I +Q + W N+ IP+ + + +DV T C ++ DPHI+ F+ YD+ + G ++L KS +R FEV R + C + V+CNC +EG D++ D C + ++ F + + + S G++ T+ F SG+ + D+ W ++T+ P DYRNT GLCG +D+ N + K+G ++ F W++ PG S+
Sbjct: 86 GTQAPIWLSLRDSETLPSPGEIKQLTACATWQFLFSTTKDCCLFQIPVSVRNC--GN--FSVYLLQPTQGC-MGYCAEAIS---DARLHPCGSDETETGGDCVRQLAASLPPPPAGRPEVLVELIESRLFCRCSFDVPAT--KNSVGFHIAWSRLSSQEVKEELTQETTVQAFSL-LELDGINLRLGDRIFCSASVFFLENPHVQSVAIESQEFFAGFKLQPELSTISEDGKEYYLRIESTVPIICSEFSELDQECKISLKLKTIGQGREHLGLNLALSSCHVDLLQTSSCANGTCSHTFVYYTAVTDFSRDGDRVSNIV--VQPIVNEDFLWNNY--IPDSIQIKVKDVPTAYCYTFTDPHIITFD--GRVYDNFKTGTFVLYKSMSRDFEVHVRQWDCRSLHYPVSCNCGFVAQEGGDIVTFDMCNGQLRESQPYLFIKSQDVTRNIKISESYLGRKVTIWFSSGAFIRADLGEWG--------MSLTIRAPSVDYRNTLGLCGTFDE-------NPENDFHDKNGM--QIDQNFNNYVAFINEWRILPGKSM 606 The following BLAST results are available for this feature:
BLAST of TCONS_00048987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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