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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049303 ID=TCONS_00049303|Name=TCONS_00049303|organism=Clytia hemisphaerica|type=transcript|length=1262bp
ataAATCAAGAAAATTAGTGAAAACATCTGGATTTTTCTCTACAAAGTTC
TCtcttccttgaaaatttgaatattctCAGTTTCACATGAAAATTTAGAG
GGAATGATTTAAGCTAAGGTAATTGATACTGGTTATAAGAGAAAGCTGAT
GCTAGccCCGAAGATTGAAAAAGATATTCCATCCTATGCTGAGGAAAAAA
CTGAAGAAACTAAACCGTCACCTCCTTCATATCTTGAGAGAATTTTATCC
ATGACTGCTGACATTGAGGAGATAAAACAACCTGAAGATGACGGGCAAGA
AACGACAAGCGTTGGTGTATCAACCGAGGAATATCATGGAGATAATAAAG
ATATGACACCACCTGATTTGAAAGTTATGGAGATCAATGAAGAGGGAATT
GAACCAGAGGATGAACACTCAGAGATTTTAAGACAAGCGAAATTTGAATG
GCTGATTCCAAAAGATTTCGGAACCTTTCAGGTTGTACATTACGATCGGC
CAACCGTTCCCGACCCATTCAACGACATTATTCAAAGCGTCATGGAGGAA
AACTCGTCAAACAAAAACCGGCTTTCGGTTAACCAATCAAAACGAGCTAC
ACCTAAATCTCCACGCACGCCTCGGACACCTTTATCCGCGCGTTCAACTA
CAAGCGGTCCACCAGCACCGAAACCTTTAAAAGGAAAAGAGCGCGTTTTG
CACGCGGATAAAGTCTACAATTTATTAATGGAGCTCgatcaaaacaatag
aaacatTAGCCAATCATATCGCACGAAAAGCCCCGTTCTGGCACCTAATT
GGCTGATATCTTCGCGTCCGATCTCCTCAAACTCTTTTGCGCCATTACCT
GAGATCAATGCAACAACGaagaaacagaaaaagaaaaagacacaaaaaga
aGTCAAATTTACTacTGAAAGTGTTCGGCGTACGATATCAAAGGTATTAG
AAGAGAACTTGAGAGACAAAGCGTACGACgccgaatatttcaaaacacAT
TTATGTATACTGACAGACATTATCAAGAGTAAAATCAAACGATTTTATGG
TCCTCGGTACCGTGTCATTTGTAATATGAACGTTTTCGAGATCAAAGGAC
AATCAGTGAGAACGGCAAGTCGCTGTTGTTGGGACACGGAAAGAGATAAT
TTTACGGAATGTATTTTTGAAGGGAATGGTTTTTCTATTACTTTTGTGGC
CTATGGTGTTTACCTGGAATGACCACTGATTGGCTGAAATTgtaatcaaa
gcaaaattttcc Run BLAST on NCBI transcript from alignment at scaffold_154:660487..665064- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049303 ID=TCONS_00049303|Name=TCONS_00049303|organism=Clytia hemisphaerica|type=transcript|length=4578bp|location=Sequence derived from alignment at scaffold_154:660487..665064- (Clytia hemisphaerica)
ATAAATCAAGAAAATTAGTGAAAACATCTGGATTTTTCTCTACAAAGTTC
TCTCTTCCTTGAAAATTTGAATATTCTCAGTTTCACATGAAAATTTAGAG
GGAATGATTTAAGCTAAGGTAATTGATACTGGTTATAAGAGAAAGCTGAT
GCTAGGCAAGTCACTTTGTTTAAAATTGCATACACACCCTTTGTTGGGCA
GGAGGGGGTGGTGGGGCTGGGGTAGATATCTAGTTTAATTTTTTTATAAG
AACATCCAAAGTTGTGGACGCCTTCGGATGTTTTAGAAATTTTTCCAGTT
TTAAGCCTAAAAATGTTCTCAAACCCTACCCTTAAGCTCGGGTCAATCTA
TGGACCGTTAGCCTCTCTCTGCATGTTTGTGCTTTGGTTCTTTTGGCGAA
AAAAGTTCTAGCCTAATTGCCATTCATCAATGATGACAATGATATCCAAT
ATGATTAACAGTAACAGGAATCAACCCTAGAAATCAGCTATAAATTGCTT
TTTCAGGAAGTCTCTCACAATATCATAAGAAACCTCAGTCTAGACGACGC
TTAAGATAATAAGAAATAGGATATAGAATTACTTCTCGGCTAAAAAGTAT
TGAAGGAAGAAATATATCTCTTGATTAAACTTAAAAAATATTTTATGAAT
TAGAGGTACAGACATAGTCGAAGGACTTGATCAAGTATATTTTATTTTTC
TTAGCCCCGAAGATTGAAAAAGATATTCCATCCTATGCTGAGGAAAAAAC
TGAAGAAACTAAACCGTCACCTCCTTCATATCTTGAGAGAATTTTATCCA
TGACTGCTGACATTGAGGAGATAAAACAACCTGAAGATGACGGGCAAGAA
ACGACAAGCGTTGGTGTATCAACCGAGGAATATCATGGAGATAATAAAGA
TATGACACCACCTGATTTGAAAGTTATGGAGATCAATGAAGAGGGAATTG
AACCAGAGGATGAACACTCAGAGATTTTAAGACAAGCGAAATTTGAATGG
CTGATTCCAAAAGATTTCGGAACCTTTCAGGTATGTTTACAATTATCACA
GACGTTTTTTGGACGTTCATCTAACGTTGGACGTTATGGGCGTTAGGCTG
ACGATATTTTGACATTTTGTGACTTAAATAAAAAATGAATCAAGAGAATG
AATTTGAAATTCATCCCAAAACTGCATTTAAAACTTCAAAGCAGTTCTTC
TAGCCAGGGTAGATCCTCTAAAGAGCTCGCCTAGTAATCATGAAGCGCAA
AAACCGTTTTTTATCATATAAAGTTGATTCGCGACATTGTCATCGTTCAT
TACAGGGAAAATAATATGCAAATGGTGGTATACGGAATTTTCTTCGGCTT
TTGGGTTTTTATTCAGTGATTTGTCTTGACTGTAGAATTGTCTAAGTTGA
CTCTCGCAAATTCGAATTCAAACGGGAAGTCTTCTTTGTTCGAATAACAG
AGAGGTTGAAATTATAGAAAGTAATTTTCCCTACGACGGGAACTGATAAA
TAAAGTCTATTCACGATAAGTGTGCACTCTTTTTTCATTTACCTATAACT
TTTGAAGGAATTCTTCAATCTTTATAAATTTGGTATCATTGTAAAGATAT
TACTGAGTGGAACAATTTAAAATAAAAAAGTTCTTGAAAAATCCTAAAAA
CGAAGATGAAAATGAAGAAGAAAAAAATGAAGATCTTGTAGAGAAGTGCT
ATAACTTTCATTTTTACTGTAGTGAATCTTTGATTATTGAACGTCATCAC
TGTGAAAAAATTTCTCAAATATAATCATTCAATCAAAAGATATCAAACAA
AGTTATAAGCTGATTGACGTCTAAAAACCCTGTTTTCTGCTGTTTTCTGC
TGTTTTTTGGGGTCAATCACTTATCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATCTTTCC
AATGATACCAAATTTATAAAGATTGAAGAATTCCTTCAAAAGTTATAGGT
AAAAGAAAAAAGAGTGCACACTTATCGTGAATAGACTTTAGTTCGAATTA
TAGAAAGCTTCGAATAATAGAAGTTACAATTAGCGAAAGTCCATTGTTGC
CTCTTTACTTTTTTTAGGTTGTACATTACGATCGGCCAACCGTTCCCGAC
CCATTCAACGACATTATTCAAAGCGTCATGGAGGAAAACTCGTCAAACAA
AAACCGGCTTTCGGTTAACCAATCAAAACGAGCTACACCTAAATCTCCAC
GCACGCCTCGGACACCTTTATCCGCGCGTTCAACTACAAGCGGTCCACCA
GCACCGAAACCTTTAAAAGGAAAAGAGCGCGTTTTGCACGCGGATAAAGT
CTACAATTTATTAATGGAGCTCGATCAAAACAATAGAAACATTAGCCAAT
CATATCGCACGAAAAGCCCCGTTCTGGCACCTAATTGGCTGATATCTTCG
CGTCCGATCTCCTCAAACTCTTTTGCGCCATTACCTGAGATCAATGCAAC
AACGAAGAAACAGAAAAAGAAAAAGACACAAAAAGAAGTCAAATTTACTG
TAAGTATCTATGACGCTATGTTGGTTTGCTCTCTCAAAGGCCTCTGTAAA
GCCATAACACATCTAGAAAAATTTGAACATGAAGAATATTCCTAATATAG
TCTCACGCATTTAGTTGTGAAGATTTCAGGACGCTCTTGTTTAGAGCACT
CGTTAACGGTGCATAAGGTTGTGATTTCAACCCAACTGGGATTTACTAAA
AGAATTGTAAATAGTACATTAAGCCTTTAAGACTCAGTGTAGGGGTAATG
TAAGTAGAGGCGCTCAAGAAAAAAGAGTGGCCTCACCCCTTAGCATAAAA
TATCAAAATTAAGTAAGAAAGCTAATTAAAAAGTAAGACTAGGTTCACCC
TCAAATGCGGTCACAAAGCTTTGGAACACACAATCTTTAACAAGTAAAAA
TAGACAATTTGAAGCATTTTTAGAGTGCTTTAAAGTGGTTTAACATATTT
CATAGGGTTAGACGTCTAAGTACTTTCGTAGCCTTTTTTATAAGAACATG
CTCGAAAAAAACTTTCCCTGGTTAAATTAAATTAAGTTAAATTAAATCTT
TCGCTAAGTGATTACATTTTTGCCACGGTAAACAAAGTGCCAATTTGAGC
CTGACCAATTTTACACCGCTTCTCAAGGTTGTACAAGTGGAGTCAACTCT
CACAAATTCCAACTTCTATATTTCGAAATAATCCCCTCAGTTTGGCTACT
AGTATAAAATGCTTTTTCTTTAATTCAAAATAAATTATTTGTTTCTGGAG
GATCGAATTAGAAAGAGACAACTGTACCTTAATGGCCCAAATCTTGAGCA
TACGCAAATTTGGACTGGAAGTAACTACAAGATTAGGCATAACTTTATCT
AGAACATATAACGAAAAAAACAACATAAAGTTTTATTACAGTTGAGCCTT
TATAACTCGAAAACATAGGGGCCACAAATTTGTTCGAGCTATGGAAAATT
TGAATTATGAAACTTCGTCTATGTTTGTTATCTGTGACAGAACCAGAAAA
AATTTTCGAGTTGAGGAGATATTCGAATCATAGAGGTCCTACATATTTTA
GAAAGGCAGGGCAGCGTCCGTTGATGGCCAGAAAGGGCACTTTTTCTTAT
GGTTTTCTGCTAAAAAGGCTGTTTTTACCAAAATTTTAGAGATTTCAGGA
GGGGCGGCAGCGTCCGATAACCGGACGCTAAAAGGGCATGAAAAATTGCC
TGTTCTAGATTTGAAGGCCTTCATTTTTTCTTATAACATAACATTTTTGC
ATTTATTTTTGTTTAGACTGAAAGTGTTCGGCGTACGATATCAAAGGTAT
TAGAAGAAAACTTGATAGACAAAANTTATAACTCGAAAACGCTAGGGGCC
ACAAATTTGTTCGAGTTATGGAAAATTTGAATTATGAAACTTCGTCTTGT
TCGAGTTAAGAGGAGGTTCGAGATTTGAAGGCTTTCATTTTTTCTTATAA
CATAAATATTTGTATTTATTTTTGTTTAGACTGAAAGTGTTCGGCGTACG
ATATCAAAGGTATTAGAAGAGAACTTGAGAGACAAAGCGTACGACGCCGA
ATATTTCAAAACACATTTATGTATACTGACAGACATTATCAAGAGTAAAA
TCAAACGATTTTATGGTCCTCGGTACCGTGTCATTTGTAATATGAACGTT
TTCGAGATCAAAGGACAATCAGTGAGAACGGCAAGTCGCTGTTGTTGGGA
CACGGAAAGAGATAATTTTACGGAATGTATTTTTGAAGGGAATGGTTTTT
CTATTACTTTTGTGGCCTATGGTGTTTACCTGGAATGACCACTGATTGGC
TGAAATTGTAATCAAAGCAAAATTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049303-exon-scaffold_154-1575043694:664910..665064 | TCONS_00049303-exon-scaffold_154-1575043694:664910..665064 | Clytia hemisphaerica | exon |
| TCONS_00049303-exon-scaffold_154-1575043694:664035..664360 | TCONS_00049303-exon-scaffold_154-1575043694:664035..664360 | Clytia hemisphaerica | exon |
| TCONS_00049303-exon-scaffold_154-1575043694:662316..662747 | TCONS_00049303-exon-scaffold_154-1575043694:662316..662747 | Clytia hemisphaerica | exon |
| TCONS_00049303-exon-scaffold_154-1575043694:660487..660835 | TCONS_00049303-exon-scaffold_154-1575043694:660487..660835 | Clytia hemisphaerica | exon |
| TCONS_00049303-exon-scaffold_154-1510915933:664910..665064 | TCONS_00049303-exon-scaffold_154-1510915933:664910..665064 | Clytia hemisphaerica | exon |
| TCONS_00049303-exon-scaffold_154-1510915933:664035..664360 | TCONS_00049303-exon-scaffold_154-1510915933:664035..664360 | Clytia hemisphaerica | exon |
| TCONS_00049303-exon-scaffold_154-1510915933:662316..662747 | TCONS_00049303-exon-scaffold_154-1510915933:662316..662747 | Clytia hemisphaerica | exon |
| TCONS_00049303-exon-scaffold_154-1510915933:660487..660835 | TCONS_00049303-exon-scaffold_154-1510915933:660487..660835 | Clytia hemisphaerica | exon |
| TCONS_00049303-exon-scaffold_154-1491911889:664910..665064 | TCONS_00049303-exon-scaffold_154-1491911889:664910..665064 | Clytia hemisphaerica | exon |
| TCONS_00049303-exon-scaffold_154-1491911889:664035..664360 | TCONS_00049303-exon-scaffold_154-1491911889:664035..664360 | Clytia hemisphaerica | exon |
| TCONS_00049303-exon-scaffold_154-1491911889:662316..662747 | TCONS_00049303-exon-scaffold_154-1491911889:662316..662747 | Clytia hemisphaerica | exon |
| TCONS_00049303-exon-scaffold_154-1491911889:660487..660835 | TCONS_00049303-exon-scaffold_154-1491911889:660487..660835 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:660487..665064 - |
Blast
The following BLAST results are available for this feature:
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