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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049306 ID=TCONS_00049306|Name=TCONS_00049306|organism=Clytia hemisphaerica|type=transcript|length=1454bp
CTCAGCTCAGagttttcgaaatttttaagGAGAGCACACttacaaaaatg
ctcaaaaagaattttctttatgATTGTTTTTGACTTAGAAGAAAAAATTC
TATTTCAGTTTGGAGAGAAAGGTAGCCCGAGATAGATATGTGGATTTAAA
GGCTATTTGGATGGATATGTGTATTGATGAACCGTCGTTTGTGTAAATGA
AGACTCTGGGAGATTATCATTGATTTGAGAGTCATTTCATAGGATTTACT
GATTCTTTTTACAattgttttttgtgtttttagtaTTTCAGATAAACTAT
AAAAATGAATCGAGCTCAATTATCCTGGGTGAACCATGAGCATATAGccC
CGAAGATTGAAAAAGATATTCCATCCTATGCTGAGGAAAAAACTGAAGAA
ACTAAACCGTCACCTCCTTCATATCTTGAGAGAATTTTATCCATGACTGC
TGACATTGAGGAGATAAAACAACCTGAAGATGACGGGCAAGAAACGACAA
GCGTTGGTGTATCAACCGAGGAATATCATGGAGATAATAAAGATATGACA
CCACCTGATTTGAAAGTTATGGAGATCAATGAAGAGGGAATTGAACCAGA
GGATGAACACTCAGAGATTTTAAGACAAGCGAAATTTGAATGGCTGATTC
CAAAAGATTTCGGAACCTTTCAGGTTGTACATTACGATCGGCCAACCGTT
CCCGACCCATTCAACGACATTATTCAAAGCGTCATGGAGGAAAACTCGTC
AAACAAAAACCGGCTTTCGGTTAACCAATCAAAACGAGCTACACCTAAAT
CTCCACGCACGCCTCGGACACCTTTATCCGCGCGTTCAACTACAAGCGGT
CCACCAGCACCGAAACCTTTAAAAGGAAAAGAGCGCGTTTTGCACGCGGA
TAAAGTCTACAATTTATTAATGGAGCTCgatcaaaacaatagaaacatTA
GCCAATCATATCGCACGAAAAGCCCCGTTCTGGCACCTAATTGGCTGATA
TCTTCGCGTCCGATCTCCTCAAACTCTTTTGCGCCATTACCTGAGATCAA
TGCAACAACGaagaaacagaaaaagaaaaagacacaaaaagaaGTCAAAT
TTACTacTGAAAGTGTTCGGCGTACGATATCAAAGGTATTAGAAGAGAAC
TTGAGAGACAAAGCGTACGACgccgaatatttcaaaacacATTTATGTAT
ACTGACAGACATTATCAAGAGTAAAATCAAACGATTTTATGGTCCTCGGT
ACCGTGTCATTTGTAATATGAACGTTTTCGAGATCAAAGGACAATCAGTG
AGAACGGCAAGTCGCTGTTGTTGGGACACGGAAAGAGATAATTTTACGGA
ATGTATTTTTGAAGGGAATGGTTTTTCTATTACTTTTGTGGCCTATGGTG
TTTACCTGGAATGACCACTGATTGGCTGAAATTgtaatcaaagcaaaatt
ttcc Run BLAST on NCBI transcript from alignment at scaffold_154:660487..666085- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049306 ID=TCONS_00049306|Name=TCONS_00049306|organism=Clytia hemisphaerica|type=transcript|length=5599bp|location=Sequence derived from alignment at scaffold_154:660487..666085- (Clytia hemisphaerica)
CTCAGCTCAGAGTTTTCGAAATTTTTAAGGAGAGCACACTTACAAAAATG
CTCAAAAAGAATTTTCTTTATGATTGTTTTTGACTTAGAAGAAAAAATTC
TATTTCAGTTTGGAGAGAAAGGTAGCCCGAGATAGATATGTGGATTTAAA
GGCTATTTGGATGGATATGTGTATTGATGAACCGTCGTTTGTGTAAATGA
AGACTCTGGGAGATTATCATTGATTTGAGAGTCATTTCATAGGATTTACT
GATTCTTTTTACAATTGTTTTTTGTGTTTTTAGTATTTCAGATAAACTAT
AAAAATGAATCGAGCTCAATTATCCTGGGTGAACCATGAGCATATAGGTA
AGTTGCTGTTGAAATGTTTTTCCTATTTTAGTTGAATGCCGGGTATAAGT
GTGGACTGGACCTCCGAAAAGCTACCCGTAGTGAGATTTTTTTTACTTTT
TATGGTTTTCGAACCCAAAAGAACCCAAAAAGAAGGAATCCCGACCTTTA
AAAAGACGAAAAGATCTTGATTTTCTGTTGTTATTGTAGTCTTTAGAGAG
ACTTATAGGAGGTAAAAAGNAAGGAATCCCGACCTTTAAAAAGACTATCT
TGACTTTCTGTTGTTTTTGTAGTACTTAGAGAGACTTTAGGAGGTAAAAA
ACCAATCTTTACCATCCGCACATACCCAACACCTATTTTTGCTTAAGTAC
TTCCCCTTGTATGGATAGATTTAATTTTGATATTGATTCGAGTCTTTAAT
AAGTCATAGTAAAAGCGTTAGAAAATTGATCGCATCAAGCATATCCGCCA
TCTCACCTCGCCTCGCCTCGGGCTTCTATATATTTCTGTTTATGACAGGA
AAGGAAAAAGTCGAGAAAAATTCATTGTGATAAGCTTGAGGGGTAGATCA
TCTTCGCGTATTCACACCGAGACAAAAGTATCTATTATGAGGTGTTTTCT
TCTTCCGAGGAAGAAGTTTTCTCAGTGTTTGTCGAAAATATTCCCGTGTT
TCTTTCAGTTTTTTTTCAATCATAAATCAAGAAAATTAGTGAAAACATCT
GGATTTTTCTCTACAAAGTTCTCTCTTCCTTGAAAATTTGAATATTCTCA
GTTTCACATGAAAATTTAGAGGGAATGATTTAAGCTAAGGTAATTGATAC
TGGTTATAAGAGAAAGCTGATGCTAGGCAAGTCACTTTGTTTAAAATTGC
ATACACACCCTTTGTTGGGCAGGAGGGGGTGGTGGGGCTGGGGTAGATAT
CTAGTTTAATTTTTTTATAAGAACATCCAAAGTTGTGGACGCCTTCGGAT
GTTTTAGAAATTTTTCCAGTTTTAAGCCTAAAAATGTTCTCAAACCCTAC
CCTTAAGCTCGGGTCAATCTATGGACCGTTAGCCTCTCTCTGCATGTTTG
TGCTTTGGTTCTTTTGGCGAAAAAAGTTCTAGCCTAATTGCCATTCATCA
ATGATGACAATGATATCCAATATGATTAACAGTAACAGGAATCAACCCTA
GAAATCAGCTATAAATTGCTTTTTCAGGAAGTCTCTCACAATATCATAAG
AAACCTCAGTCTAGACGACGCTTAAGATAATAAGAAATAGGATATAGAAT
TACTTCTCGGCTAAAAAGTATTGAAGGAAGAAATATATCTCTTGATTAAA
CTTAAAAAATATTTTATGAATTAGAGGTACAGACATAGTCGAAGGACTTG
ATCAAGTATATTTTATTTTTCTTAGCCCCGAAGATTGAAAAAGATATTCC
ATCCTATGCTGAGGAAAAAACTGAAGAAACTAAACCGTCACCTCCTTCAT
ATCTTGAGAGAATTTTATCCATGACTGCTGACATTGAGGAGATAAAACAA
CCTGAAGATGACGGGCAAGAAACGACAAGCGTTGGTGTATCAACCGAGGA
ATATCATGGAGATAATAAAGATATGACACCACCTGATTTGAAAGTTATGG
AGATCAATGAAGAGGGAATTGAACCAGAGGATGAACACTCAGAGATTTTA
AGACAAGCGAAATTTGAATGGCTGATTCCAAAAGATTTCGGAACCTTTCA
GGTATGTTTACAATTATCACAGACGTTTTTTGGACGTTCATCTAACGTTG
GACGTTATGGGCGTTAGGCTGACGATATTTTGACATTTTGTGACTTAAAT
AAAAAATGAATCAAGAGAATGAATTTGAAATTCATCCCAAAACTGCATTT
AAAACTTCAAAGCAGTTCTTCTAGCCAGGGTAGATCCTCTAAAGAGCTCG
CCTAGTAATCATGAAGCGCAAAAACCGTTTTTTATCATATAAAGTTGATT
CGCGACATTGTCATCGTTCATTACAGGGAAAATAATATGCAAATGGTGGT
ATACGGAATTTTCTTCGGCTTTTGGGTTTTTATTCAGTGATTTGTCTTGA
CTGTAGAATTGTCTAAGTTGACTCTCGCAAATTCGAATTCAAACGGGAAG
TCTTCTTTGTTCGAATAACAGAGAGGTTGAAATTATAGAAAGTAATTTTC
CCTACGACGGGAACTGATAAATAAAGTCTATTCACGATAAGTGTGCACTC
TTTTTTCATTTACCTATAACTTTTGAAGGAATTCTTCAATCTTTATAAAT
TTGGTATCATTGTAAAGATATTACTGAGTGGAACAATTTAAAATAAAAAA
GTTCTTGAAAAATCCTAAAAACGAAGATGAAAATGAAGAAGAAAAAAATG
AAGATCTTGTAGAGAAGTGCTATAACTTTCATTTTTACTGTAGTGAATCT
TTGATTATTGAACGTCATCACTGTGAAAAAATTTCTCAAATATAATCATT
CAATCAAAAGATATCAAACAAAGTTATAAGCTGATTGACGTCTAAAAACC
CTGTTTTCTGCTGTTTTCTGCTGTTTTTTGGGGTCAATCACTTATCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAATATCTTTCCAATGATACCAAATTTATAAAGATTGAAGA
ATTCCTTCAAAAGTTATAGGTAAAAGAAAAAAGAGTGCACACTTATCGTG
AATAGACTTTAGTTCGAATTATAGAAAGCTTCGAATAATAGAAGTTACAA
TTAGCGAAAGTCCATTGTTGCCTCTTTACTTTTTTTAGGTTGTACATTAC
GATCGGCCAACCGTTCCCGACCCATTCAACGACATTATTCAAAGCGTCAT
GGAGGAAAACTCGTCAAACAAAAACCGGCTTTCGGTTAACCAATCAAAAC
GAGCTACACCTAAATCTCCACGCACGCCTCGGACACCTTTATCCGCGCGT
TCAACTACAAGCGGTCCACCAGCACCGAAACCTTTAAAAGGAAAAGAGCG
CGTTTTGCACGCGGATAAAGTCTACAATTTATTAATGGAGCTCGATCAAA
ACAATAGAAACATTAGCCAATCATATCGCACGAAAAGCCCCGTTCTGGCA
CCTAATTGGCTGATATCTTCGCGTCCGATCTCCTCAAACTCTTTTGCGCC
ATTACCTGAGATCAATGCAACAACGAAGAAACAGAAAAAGAAAAAGACAC
AAAAAGAAGTCAAATTTACTGTAAGTATCTATGACGCTATGTTGGTTTGC
TCTCTCAAAGGCCTCTGTAAAGCCATAACACATCTAGAAAAATTTGAACA
TGAAGAATATTCCTAATATAGTCTCACGCATTTAGTTGTGAAGATTTCAG
GACGCTCTTGTTTAGAGCACTCGTTAACGGTGCATAAGGTTGTGATTTCA
ACCCAACTGGGATTTACTAAAAGAATTGTAAATAGTACATTAAGCCTTTA
AGACTCAGTGTAGGGGTAATGTAAGTAGAGGCGCTCAAGAAAAAAGAGTG
GCCTCACCCCTTAGCATAAAATATCAAAATTAAGTAAGAAAGCTAATTAA
AAAGTAAGACTAGGTTCACCCTCAAATGCGGTCACAAAGCTTTGGAACAC
ACAATCTTTAACAAGTAAAAATAGACAATTTGAAGCATTTTTAGAGTGCT
TTAAAGTGGTTTAACATATTTCATAGGGTTAGACGTCTAAGTACTTTCGT
AGCCTTTTTTATAAGAACATGCTCGAAAAAAACTTTCCCTGGTTAAATTA
AATTAAGTTAAATTAAATCTTTCGCTAAGTGATTACATTTTTGCCACGGT
AAACAAAGTGCCAATTTGAGCCTGACCAATTTTACACCGCTTCTCAAGGT
TGTACAAGTGGAGTCAACTCTCACAAATTCCAACTTCTATATTTCGAAAT
AATCCCCTCAGTTTGGCTACTAGTATAAAATGCTTTTTCTTTAATTCAAA
ATAAATTATTTGTTTCTGGAGGATCGAATTAGAAAGAGACAACTGTACCT
TAATGGCCCAAATCTTGAGCATACGCAAATTTGGACTGGAAGTAACTACA
AGATTAGGCATAACTTTATCTAGAACATATAACGAAAAAAACAACATAAA
GTTTTATTACAGTTGAGCCTTTATAACTCGAAAACATAGGGGCCACAAAT
TTGTTCGAGCTATGGAAAATTTGAATTATGAAACTTCGTCTATGTTTGTT
ATCTGTGACAGAACCAGAAAAAATTTTCGAGTTGAGGAGATATTCGAATC
ATAGAGGTCCTACATATTTTAGAAAGGCAGGGCAGCGTCCGTTGATGGCC
AGAAAGGGCACTTTTTCTTATGGTTTTCTGCTAAAAAGGCTGTTTTTACC
AAAATTTTAGAGATTTCAGGAGGGGCGGCAGCGTCCGATAACCGGACGCT
AAAAGGGCATGAAAAATTGCCTGTTCTAGATTTGAAGGCCTTCATTTTTT
CTTATAACATAACATTTTTGCATTTATTTTTGTTTAGACTGAAAGTGTTC
GGCGTACGATATCAAAGGTATTAGAAGAAAACTTGATAGACAAAANTTAT
AACTCGAAAACGCTAGGGGCCACAAATTTGTTCGAGTTATGGAAAATTTG
AATTATGAAACTTCGTCTTGTTCGAGTTAAGAGGAGGTTCGAGATTTGAA
GGCTTTCATTTTTTCTTATAACATAAATATTTGTATTTATTTTTGTTTAG
ACTGAAAGTGTTCGGCGTACGATATCAAAGGTATTAGAAGAGAACTTGAG
AGACAAAGCGTACGACGCCGAATATTTCAAAACACATTTATGTATACTGA
CAGACATTATCAAGAGTAAAATCAAACGATTTTATGGTCCTCGGTACCGT
GTCATTTGTAATATGAACGTTTTCGAGATCAAAGGACAATCAGTGAGAAC
GGCAAGTCGCTGTTGTTGGGACACGGAAAGAGATAATTTTACGGAATGTA
TTTTTGAAGGGAATGGTTTTTCTATTACTTTTGTGGCCTATGGTGTTTAC
CTGGAATGACCACTGATTGGCTGAAATTGTAATCAAAGCAAAATTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049306-exon-scaffold_154-1575043694:665739..666085 | TCONS_00049306-exon-scaffold_154-1575043694:665739..666085 | Clytia hemisphaerica | exon |
| TCONS_00049306-exon-scaffold_154-1575043694:664035..664360 | TCONS_00049306-exon-scaffold_154-1575043694:664035..664360 | Clytia hemisphaerica | exon |
| TCONS_00049306-exon-scaffold_154-1575043694:662316..662747 | TCONS_00049306-exon-scaffold_154-1575043694:662316..662747 | Clytia hemisphaerica | exon |
| TCONS_00049306-exon-scaffold_154-1575043694:660487..660835 | TCONS_00049306-exon-scaffold_154-1575043694:660487..660835 | Clytia hemisphaerica | exon |
| TCONS_00049306-exon-scaffold_154-1510915933:665739..666085 | TCONS_00049306-exon-scaffold_154-1510915933:665739..666085 | Clytia hemisphaerica | exon |
| TCONS_00049306-exon-scaffold_154-1510915933:664035..664360 | TCONS_00049306-exon-scaffold_154-1510915933:664035..664360 | Clytia hemisphaerica | exon |
| TCONS_00049306-exon-scaffold_154-1510915933:662316..662747 | TCONS_00049306-exon-scaffold_154-1510915933:662316..662747 | Clytia hemisphaerica | exon |
| TCONS_00049306-exon-scaffold_154-1510915933:660487..660835 | TCONS_00049306-exon-scaffold_154-1510915933:660487..660835 | Clytia hemisphaerica | exon |
| TCONS_00049306-exon-scaffold_154-1491911889:665739..666085 | TCONS_00049306-exon-scaffold_154-1491911889:665739..666085 | Clytia hemisphaerica | exon |
| TCONS_00049306-exon-scaffold_154-1491911889:664035..664360 | TCONS_00049306-exon-scaffold_154-1491911889:664035..664360 | Clytia hemisphaerica | exon |
| TCONS_00049306-exon-scaffold_154-1491911889:662316..662747 | TCONS_00049306-exon-scaffold_154-1491911889:662316..662747 | Clytia hemisphaerica | exon |
| TCONS_00049306-exon-scaffold_154-1491911889:660487..660835 | TCONS_00049306-exon-scaffold_154-1491911889:660487..660835 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:660487..666085 - |
Blast
The following BLAST results are available for this feature:
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