|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049330 ID=TCONS_00049330|Name=TCONS_00049330|organism=Clytia hemisphaerica|type=transcript|length=1766bp
tttctgattacCCAATATTTTGAGTGACATAAGTTTTAGGTTGAAACtga
tcaaaattcaaaaagttttattcGAAGGTGATTGCTTGTTGgtaaaaatg
atgaaaactcAAGAAATGTTTGTTGCCTGCGTTCTGCTTTTTGAAACGCA
GCTTGTGCATATAGCAGCAGTTCGATACGAACTAGTTGTAGAGAATTCAG
CCCCAAGTAAACTCCCCTTCAGCTCAACAGATGTCAAATTCGAGCAACAT
TGCATCTCGAAATGTCATTACATGATCAAATGTGCATCGTTTCTCATCGA
ACCTACATCAAACATCAATCCAATCAAATGTAGTTTTTATAACACCACAA
CAACAAAAGTAACAGGTGATTTTCAAACTTCTACAGGTTCAAAATTGTTC
ACAGATATTCGAGATTGTCAAGATGTTTACGATCGTGGTTCAAAAGCTTC
TGGTTTCTATTCAGTCAATCTTCTTGGCAAAGGTGAGCGTGATGTCTTCT
GTAATATGGATTTTCAAGGGGGAGGATGGATGGCTTTCACTTACCGAATT
CACGGTGGCGGTTGGTGGGACACAAAATTTGACAAATACAAAAACGGATT
CGGAAGAGCACCCGAAGATTATTATCTTGGTAACGAAAACCTTCATCAGC
TTACCAAATCAGGAGAATACGAACTTTATTATTTAACTGATGCTAGAGAT
ACTCCCACCACATATCATGGTTGGTATGGTCAATTTAGTGTATCTGACGA
AGCAGATTTCTATCGATTAAGTATTGGTGATTTCAGAGAAGGTACTGATG
TGTTTTTTACAGGCAATGGCAAACAGTTTACTGCCAAAGATGTAGACAAG
GATGGTAACAACGATAGGAATTGCGCTAGTATGAAAAAAGGTGGATTCTG
GTACGTTAATTGTGGCCGTGTATACCCTCATAGTAAATTTGGCAACCTCC
ACAAACCTGCATTATGTATTGGACTTCAACCAGCTCAAGATGGTCTAAAA
GTTtgttgtaaaaattttcaaatctttttgagGAGAAATTTCTAAACATT
GTTATTAtttgagtgaaggtagagagtctatcaccatatttccctaacac
cctgcctggatGTGCTTGGGATTTAAATTGAACACAGTCTATTGTGGtga
aagtctgtgatcgaaattGTCACACTATCAATCGGCAGAATGTTATTGAG
ACACGGCCTTATCCAGATAGCGAGCGAATGTATATCGAGTTGTTATTATT
GTTGAGGAAATGTAAAACAGACTTTCATCTTAACGAACGAACATCTCAAC
AAAATGACTAAGCTGCATACTTGAAGTATGTGTCTCAGGTAAAACAACAG
CTATACCTTAATCAATGAACTACCTCACTATTGGTATTGCCAACTTACTG
TATCTTACTGTATCTGACGGATCAGATTGATATCGATTGAGATTCGGCAT
TTTCagtatgtgaaaaaaaaattcaaaatagctCTACCAATAAGAATAGA
CTTGGCATTGTATGGTCAGCAAAATTAGATTGTGTGTCGAAGGAGATTCA
AAGGAGATTGCTAAGCATTGGAGCTTTCAGAGGTGTTACTGATGTGTTTT
TATGAAATGATAAAAAGGGGTAGCAAAGATCAGAATGTGACTCGATTTTC
TTCTTTCGCTAATGTAACAATTATGATTCGAATCTTCCCTAATTCGAAAA
CAGTTTCTTAAATTATTATAAAAGTTATTTATCCTTATCTTTAAGttatg
tatttttaattttgtg Run BLAST on NCBI protein sequence of TCONS_00049330-protein >TCONS_00049330-protein ID=TCONS_00049330-protein|Name=TCONS_00049330-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
MMKTQEMFVACVLLFETQLVHIAAVRYELVVENSAPSKLPFSSTDVKFEQ
HCISKCHYMIKCASFLIEPTSNINPIKCSFYNTTTTKVTGDFQTSTGSKL
FTDIRDCQDVYDRGSKASGFYSVNLLGKGERDVFCNMDFQGGGWMAFTYR
IHGGGWWDTKFDKYKNGFGRAPEDYYLGNENLHQLTKSGEYELYYLTDAR
DTPTTYHGWYGQFSVSDEADFYRLSIGDFREGTDVFFTGNGKQFTAKDVD
KDGNNDRNCASMKKGGFWYVNCGRVYPHSKFGNLHKPALCIGLQPAQDGL
KVCCKNFQIFLRRNF Run BLAST on NCBI transcript from alignment at scaffold_154:363658..365423 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049330 ID=TCONS_00049330|Name=TCONS_00049330|organism=Clytia hemisphaerica|type=transcript|length=1766bp|location=Sequence derived from alignment at scaffold_154:363658..365423 (Clytia hemisphaerica)
cacaaaattaaaaatacataaCTTAAAGATAAGGATAAATAACTTTTATA
ATAATTTAAGAAACTGTTTTCGAATTAGGGAAGATTCGAATCATAATTGT
TACATTAGCGAAAGAAGAAAATCGAGTCACATTCTGATCTTTGCTACCCC
TTTTTATCATTTCATAAAAACACATCAGTAACACCTCTGAAAGCTCCAAT
GCTTAGCAATCTCCTTTGAATCTCCTTCGACACACAATCTAATTTTGCTG
ACCATACAATGCCAAGTCTATTCTTATTGGTAGagctattttgaattttt
ttttcacatactGAAAATGCCGAATCTCAATCGATATCAATCTGATCCGT
CAGATACAGTAAGATACAGTAAGTTGGCAATACCAATAGTGAGGTAGTTC
ATTGATTAAGGTATAGCTGTTGTTTTACCTGAGACACATACTTCAAGTAT
GCAGCTTAGTCATTTTGTTGAGATGTTCGTTCGTTAAGATGAAAGTCTGT
TTTACATTTCCTCAACAATAATAACAACTCGATATACATTCGCTCGCTAT
CTGGATAAGGCCGTGTCTCAATAACATTCTGCCGATTGATAGTGTGACaa
tttcgatcacagactttcaCCACAATAGACTGTGTTCAATTTAAATCCCA
AGCACatccaggcagggtgttagggaaatatggtgatagactctctacct
tcactcaaaTAATAACAATGTTTAGAAATTTCTCctcaaaaagatttgaa
aatttttacaacaAACTTTTAGACCATCTTGAGCTGGTTGAAGTCCAATA
CATAATGCAGGTTTGTGGAGGTTGCCAAATTTACTATGAGGGTATACACG
GCCACAATTAACGTACCAGAATCCACCTTTTTTCATACTAGCGCAATTCC
TATCGTTGTTACCATCCTTGTCTACATCTTTGGCAGTAAACTGTTTGCCA
TTGCCTGTAAAAAACACATCAGTACCTTCTCTGAAATCACCAATACTTAA
TCGATAGAAATCTGCTTCGTCAGATACACTAAATTGACCATACCAACCAT
GATATGTGGTGGGAGTATCTCTAGCATCAGTTAAATAATAAAGTTCGTAT
TCTCCTGATTTGGTAAGCTGATGAAGGTTTTCGTTACCAAGATAATAATC
TTCGGGTGCTCTTCCGAATCCGTTTTTGTATTTGTCAAATTTTGTGTCCC
ACCAACCGCCACCGTGAATTCGGTAAGTGAAAGCCATCCATCCTCCCCCT
TGAAAATCCATATTACAGAAGACATCACGCTCACCTTTGCCAAGAAGATT
GACTGAATAGAAACCAGAAGCTTTTGAACCACGATCGTAAACATCTTGAC
AATCTCGAATATCTGTGAACAATTTTGAACCTGTAGAAGTTTGAAAATCA
CCTGTTACTTTTGTTGTTGTGGTGTTATAAAAACTACATTTGATTGGATT
GATGTTTGATGTAGGTTCGATGAGAAACGATGCACATTTGATCATGTAAT
GACATTTCGAGATGCAATGTTGCTCGAATTTGACATCTGTTGAGCTGAAG
GGGAGTTTACTTGGGGCTGAATTCTCTACAACTAGTTCGTATCGAACTGC
TGCTATATGCACAAGCTGCGTTTCAAAAAGCAGAACGCAGGCAACAAACA
TTTCTTgagttttcatcatttttacCAACAAGCAATCACCTTCgaataaa
actttttgaattttgatcaGTTTCAACCTAAAACTTATGTCACTCAAAAT
ATTGGgtaatcagaaa Coding sequence (CDS) from alignment at scaffold_154:363658..365423 >TCONS_00049330 ID=TCONS_00049330|Name=TCONS_00049330|organism=Clytia hemisphaerica|type=CDS|length=948bp|location=Sequence derived from alignment at scaffold_154:363658..365423 (Clytia hemisphaerica)
TTAGAAATTTCTCctcaaaaagatttgaaaatttttacaacaAACTTTTA
GACCATCTTGAGCTGGTTGAAGTCCAATACATAATGCAGGTTTGTGGAGG
TTGCCAAATTTACTATGAGGGTATACACGGCCACAATTAACGTACCAGAA
TCCACCTTTTTTCATACTAGCGCAATTCCTATCGTTGTTACCATCCTTGT
CTACATCTTTGGCAGTAAACTGTTTGCCATTGCCTGTAAAAAACACATCA
GTACCTTCTCTGAAATCACCAATACTTAATCGATAGAAATCTGCTTCGTC
AGATACACTAAATTGACCATACCAACCATGATATGTGGTGGGAGTATCTC
TAGCATCAGTTAAATAATAAAGTTCGTATTCTCCTGATTTGGTAAGCTGA
TGAAGGTTTTCGTTACCAAGATAATAATCTTCGGGTGCTCTTCCGAATCC
GTTTTTGTATTTGTCAAATTTTGTGTCCCACCAACCGCCACCGTGAATTC
GGTAAGTGAAAGCCATCCATCCTCCCCCTTGAAAATCCATATTACAGAAG
ACATCACGCTCACCTTTGCCAAGAAGATTGACTGAATAGAAACCAGAAGC
TTTTGAACCACGATCGTAAACATCTTGACAATCTCGAATATCTGTGAACA
ATTTTGAACCTGTAGAAGTTTGAAAATCACCTGTTACTTTTGTTGTTGTG
GTGTTATAAAAACTACATTTGATTGGATTGATGTTTGATGTAGGTTCGAT
GAGAAACGATGCACATTTGATCATGTAATGACATTTCGAGATGCAATGTT
GCTCGAATTTGACATCTGTTGAGCTGAAGGGGAGTTTACTTGGGGCTGAA
TTCTCTACAACTAGTTCGTATCGAACTGCTGCTATATGCACAAGCTGCGT
TTCAAAAAGCAGAACGCAGGCAACAAACATTTCTTgagttttcatcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049330-exon-scaffold_154-1491911889:363658..365423 | TCONS_00049330-exon-scaffold_154-1491911889:363658..365423 | Clytia hemisphaerica | exon |
| TCONS_00049330-exon-scaffold_154-1510915933:363658..365423 | TCONS_00049330-exon-scaffold_154-1510915933:363658..365423 | Clytia hemisphaerica | exon |
| TCONS_00049330-exon-scaffold_154-1575043694:363658..365423 | TCONS_00049330-exon-scaffold_154-1575043694:363658..365423 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:363658..365423 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00049330 vs. Swiss-Prot (Human)
Match: FCN3 (Ficolin-3 OS=Homo sapiens GN=FCN3 PE=1 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 4.498e-28 Identity = 67/173 (38.73%), Postives = 95/173 (54.91%), Query Frame = 2
Query: 410 RDCQDVYDRGSKASGFYSVNLLGKGERDVFCNMDFQGGGWMAFTYRIHGGGWWDTKFDKYKNGFGRAPEDYYLGNENLHQLTKSGEYELYY-LTDARDTPTTYHGWYGQFSVSDEADFYRLSIGDFREGT--DVFFTGNGKQFTAKDVDKDGNNDRNCASMKKGGFWYVNCGR 919
R+C+++ +G+ SG+Y + L VFC+MD +GGGW+ F R G + + Y+ GFG +++LGNENLHQLT G +EL L D T H Y F + E D Y+L++G F EGT D +G+ FT D D D +N NCA + G +WY +C R
Sbjct: 91 RNCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQLTLQGNWELRVELEDFNGNRTFAH--YATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRPFTTYDADHDSSNS-NCAVIVHGAWWYASCYR 260
The following BLAST results are available for this feature:
|
