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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049331 ID=TCONS_00049331|Name=TCONS_00049331|organism=Clytia hemisphaerica|type=transcript|length=1759bp
aaaagaacaaaaactttttacgaattaaataacaaaagctttgattcaca
aaattaaaaatacataaCTTAAAGATGAAGccaaataatttttataataa
tttaaGAAACTGTTTTCGAATTAGGGAAGATTCGAATCATAATTGTTACA
TTAGCGAAAGAAGAAAATGGAGTTACATTCTGATCTTTGCTACCCCTTTT
TACCATTTCATAAAAACACATCAGTAACACCTCTGAAAGCTCCAATGCTT
AGCAATCTCCTTTGAAGCTCTTTTGACACACAATCTAATTTTGCTGACCA
TACAGTGCCAAGTCTATTCTTATGTTGTATTTCATGGTTTTGTGCTTATT
AGTTTATTTTTATTGGTAGagctattttgaaaatatttttcacatacTGA
AATTGCCGAATCTCAATCGATATCAATCTGATCCGTCAGATACAGTAAGA
TACAGTAAGTTGGGAATACCAATAGTGAGGTAGTTCATTGATTAAGGTAT
AGCTATTGTTTTAACTGAGACACATATTTCAAGTATGCAGCTTGGTCATT
CATTTTGTTGAGATGTTCGTTCGTTAAGATGAAAGTCTGTTTTACATTTC
CTCAACAATAATAACAACTCGATATACATTCACTCGCCATCTGGATAAGG
CCATATCTCACGAATATTCTGtcgattggtagtgtgaaggttttgATTGC
AGACTTGCATCACAATAGACTGTGTTCGAATTCCAAGCACatccaggcag
ggtgttagggaaatatggtgatagactctctaccttcactcaaaTAATAA
CAatgtttagaaatttcttctcaaaaagatttgaaaatttttacaacaAA
CTTTCGGACCATCTTGAACTGGTTTAAGTCCAATACATAGTGCAGGTTCA
TGGAGGTTGCCAAATTTACTATGAGGTTGTACACGGCCACAATTAGCGTA
CCAGAATCCACCTTTTTTGATAATAGCGCAATTCCCATCGTTGTTACCAT
CCTTGTCTACATCTTTGGCAGTAAACTGTTTGCCATTACCTGTAAAAAAC
ACATCAGTACCTTCTCTGAAATCACCAATGCTTAATCGATAGAAATCTGC
TTCGTCAGATACAATAAATTGACCATACCAACCATGATATATGGTGGGAG
TATCTCTAGCATCAGTTAAATAATAAAGTTCGTATTCTCCTGATTTGGTA
AGCTGATGAAGGTTTTCGTTACCAAGATAATAATCTTTGGGTGCTCTTCC
GAATCCGTTTTTGTATTTGTCAAATTTTGTGTCCCACCAAACGCCACCGC
GAATTCGGTAAGTGAAAGCCATCCATCCTCCCCCTTGAAAATCCATATTA
CAGAAGACATCACGCTCACCTTTGCCAAGAAGATTGACTGAATAGAAACC
AGAAGCTTTTGAACCACGATCGTAAACATCTTGACAATCTCGAATATCTG
TGAACAATTTTGAACCTGTAGAAGTTTGAAAATCACCTGTTACTTTTGTT
GTTGTGGTGTTATAAAAACTACATTTGATTGGATTTATGTTTGATGTAAG
TTCGATGAGAAACGATGCACATTTGATCATATAATGACATTTCGAGATAC
AATGTTGTTCGAATTTGACATCTGTTGAGCTGTAGGGGAGTTTACTTGGC
TTTAAGTTCATAAAAGCCAACTCATATCGAGCTGCTATTATAACTTGGCT
GTCCAACAAATATGAAAGAATGATCAAACACAGCATTGTCATAAAAAACA
CGTTCTCTC Run BLAST on NCBI protein sequence of TCONS_00049331-protein >TCONS_00049331-protein ID=TCONS_00049331-protein|Name=TCONS_00049331-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
ENVFFMTMLCLIILSYLLDSQVIIAARYELAFMNLKPSKLPYSSTDVKFE
QHCISKCHYMIKCASFLIELTSNINPIKCSFYNTTTTKVTGDFQTSTGSK
LFTDIRDCQDVYDRGSKASGFYSVNLLGKGERDVFCNMDFQGGGWMAFTY
RIRGGVWWDTKFDKYKNGFGRAPKDYYLGNENLHQLTKSGEYELYYLTDA
RDTPTIYHGWYGQFIVSDEADFYRLSIGDFREGTDVFFTGNGKQFTAKDV
DKDGNNDGNCAIIKKGGFWYANCGRVQPHSKFGNLHEPALCIGLKPVQDG
PKVCCKNFQIFLRRNF Run BLAST on NCBI transcript from alignment at scaffold_154:378284..380042 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049331 ID=TCONS_00049331|Name=TCONS_00049331|organism=Clytia hemisphaerica|type=transcript|length=1759bp|location=Sequence derived from alignment at scaffold_154:378284..380042 (Clytia hemisphaerica)
GAGAGAACGTGTTTTTTATGACAATGCTGTGTTTGATCATTCTTTCATAT
TTGTTGGACAGCCAAGTTATAATAGCAGCTCGATATGAGTTGGCTTTTAT
GAACTTAAAGCCAAGTAAACTCCCCTACAGCTCAACAGATGTCAAATTCG
AACAACATTGTATCTCGAAATGTCATTATATGATCAAATGTGCATCGTTT
CTCATCGAACTTACATCAAACATAAATCCAATCAAATGTAGTTTTTATAA
CACCACAACAACAAAAGTAACAGGTGATTTTCAAACTTCTACAGGTTCAA
AATTGTTCACAGATATTCGAGATTGTCAAGATGTTTACGATCGTGGTTCA
AAAGCTTCTGGTTTCTATTCAGTCAATCTTCTTGGCAAAGGTGAGCGTGA
TGTCTTCTGTAATATGGATTTTCAAGGGGGAGGATGGATGGCTTTCACTT
ACCGAATTCGCGGTGGCGTTTGGTGGGACACAAAATTTGACAAATACAAA
AACGGATTCGGAAGAGCACCCAAAGATTATTATCTTGGTAACGAAAACCT
TCATCAGCTTACCAAATCAGGAGAATACGAACTTTATTATTTAACTGATG
CTAGAGATACTCCCACCATATATCATGGTTGGTATGGTCAATTTATTGTA
TCTGACGAAGCAGATTTCTATCGATTAAGCATTGGTGATTTCAGAGAAGG
TACTGATGTGTTTTTTACAGGTAATGGCAAACAGTTTACTGCCAAAGATG
TAGACAAGGATGGTAACAACGATGGGAATTGCGCTATTATCAAAAAAGGT
GGATTCTGGTACGCTAATTGTGGCCGTGTACAACCTCATAGTAAATTTGG
CAACCTCCATGAACCTGCACTATGTATTGGACTTAAACCAGTTCAAGATG
GTCCGAAAGTTtgttgtaaaaattttcaaatctttttgagaagaaatttc
taaacatTGTTATTAtttgagtgaaggtagagagtctatcaccatatttc
cctaacaccctgcctggatGTGCTTGGAATTCGAACACAGTCTATTGTGA
TGCAAGTCTGCAATcaaaaccttcacactaccaatcgaCAGAATATTCGT
GAGATATGGCCTTATCCAGATGGCGAGTGAATGTATATCGAGTTGTTATT
ATTGTTGAGGAAATGTAAAACAGACTTTCATCTTAACGAACGAACATCTC
AACAAAATGAATGACCAAGCTGCATACTTGAAATATGTGTCTCAGTTAAA
ACAATAGCTATACCTTAATCAATGAACTACCTCACTATTGGTATTCCCAA
CTTACTGTATCTTACTGTATCTGACGGATCAGATTGATATCGATTGAGAT
TCGGCAATTTCAgtatgtgaaaaatattttcaaaatagctCTACCAATAA
AAATAAACTAATAAGCACAAAACCATGAAATACAACATAAGAATAGACTT
GGCACTGTATGGTCAGCAAAATTAGATTGTGTGTCAAAAGAGCTTCAAAG
GAGATTGCTAAGCATTGGAGCTTTCAGAGGTGTTACTGATGTGTTTTTAT
GAAATGGTAAAAAGGGGTAGCAAAGATCAGAATGTAACTCCATTTTCTTC
TTTCGCTAATGTAACAATTATGATTCGAATCTTCCCTAATTCGAAAACAG
TTTCttaaattattataaaaattatttggCTTCATCTTTAAGttatgtat
ttttaattttgtgaatcaaagcttttgttatttaattcgtaaaaagtttt
tgttctttt Coding sequence (CDS) from alignment at scaffold_154:378284..380042 >TCONS_00049331 ID=TCONS_00049331|Name=TCONS_00049331|organism=Clytia hemisphaerica|type=CDS|length=951bp|location=Sequence derived from alignment at scaffold_154:378284..380042 (Clytia hemisphaerica)
GAGAACGTGTTTTTTATGACAATGCTGTGTTTGATCATTCTTTCATATTT
GTTGGACAGCCAAGTTATAATAGCAGCTCGATATGAGTTGGCTTTTATGA
ACTTAAAGCCAAGTAAACTCCCCTACAGCTCAACAGATGTCAAATTCGAA
CAACATTGTATCTCGAAATGTCATTATATGATCAAATGTGCATCGTTTCT
CATCGAACTTACATCAAACATAAATCCAATCAAATGTAGTTTTTATAACA
CCACAACAACAAAAGTAACAGGTGATTTTCAAACTTCTACAGGTTCAAAA
TTGTTCACAGATATTCGAGATTGTCAAGATGTTTACGATCGTGGTTCAAA
AGCTTCTGGTTTCTATTCAGTCAATCTTCTTGGCAAAGGTGAGCGTGATG
TCTTCTGTAATATGGATTTTCAAGGGGGAGGATGGATGGCTTTCACTTAC
CGAATTCGCGGTGGCGTTTGGTGGGACACAAAATTTGACAAATACAAAAA
CGGATTCGGAAGAGCACCCAAAGATTATTATCTTGGTAACGAAAACCTTC
ATCAGCTTACCAAATCAGGAGAATACGAACTTTATTATTTAACTGATGCT
AGAGATACTCCCACCATATATCATGGTTGGTATGGTCAATTTATTGTATC
TGACGAAGCAGATTTCTATCGATTAAGCATTGGTGATTTCAGAGAAGGTA
CTGATGTGTTTTTTACAGGTAATGGCAAACAGTTTACTGCCAAAGATGTA
GACAAGGATGGTAACAACGATGGGAATTGCGCTATTATCAAAAAAGGTGG
ATTCTGGTACGCTAATTGTGGCCGTGTACAACCTCATAGTAAATTTGGCA
ACCTCCATGAACCTGCACTATGTATTGGACTTAAACCAGTTCAAGATGGT
CCGAAAGTTtgttgtaaaaattttcaaatctttttgagaagaaatttcta
a
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049331-exon-scaffold_154-1491911889:378284..380042 | TCONS_00049331-exon-scaffold_154-1491911889:378284..380042 | Clytia hemisphaerica | exon |
| TCONS_00049331-exon-scaffold_154-1510915933:378284..380042 | TCONS_00049331-exon-scaffold_154-1510915933:378284..380042 | Clytia hemisphaerica | exon |
| TCONS_00049331-exon-scaffold_154-1575043694:378284..380042 | TCONS_00049331-exon-scaffold_154-1575043694:378284..380042 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:378284..380042 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00049331 vs. Swiss-Prot (Human)
Match: FCN3 (Ficolin-3 OS=Homo sapiens GN=FCN3 PE=1 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 4.396e-26 Identity = 66/180 (36.67%), Postives = 99/180 (55.00%), Query Frame = -3
Query: 912 RDCQDVYDRGSKASGFYSVNLLGKGERDVFCNMDFQGGGWMAFTYRIRGGVWWDTKFDKYKNGFGRAPKDYYLGNENLHQLTKSGEYELYY-LTDARDTPTIYHGWYGQFIVSDEADFYRLSIGDFREGT--DVFFTGNGKQFTAXXXXXXXXXXXNCAIIKKGGFWYANCGRVQPHSKF 1442
R+C+++ +G+ SG+Y + L VFC+MD +GGGW+ F R G V + + Y+ GFG +++LGNENLHQLT G +EL L D T H Y F + E D Y+L++G F EGT D +G+ FT +++ NCA+I G +WYA+C R + ++
Sbjct: 91 RNCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQLTLQGNWELRVELEDFNGNRTFAH--YATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRPFTT-YDADHDSSNSNCAVIVHGAWWYASCYRSNLNGRY 267
The following BLAST results are available for this feature:
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