TCONS_00049393 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049393
Unique NameTCONS_00049393
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049393 ID=TCONS_00049393|Name=TCONS_00049393|organism=Clytia hemisphaerica|type=transcript|length=1696bp
ATAGCGGTGAGAGACAGTGAGAAAAATGCTAGATCACCATGGAGGAGGAA
ACTCTAAATTACAGAGACTTTTCTTGGTGCTTCTCGGTGGGGTGATTGTT
TTGTTGGCATTAGAAGGATTGTCGATGGTCAGAAGTGAAGCAAGGTGTAC
TATACAACAAGTTCCAGTTGTGATACAACAAGGAGATAGGCGGGAAAAGG
TAAATTCTTGATTTGTATCAGCGTTCCCAATTtcaacttttatttaaaag
ctgTTTCTATTTAGTACAAACTACGCAGCAGTCGAGGTTATAATGAAAGA
TTATTGTGGAAATTTGTCCTAAGAAGTGCACAGTGTAAAAAATCTCAGCC
AAGCCCGCTATCCCGAAGTTTTAAGCTCGTTTCGACAAACACTTATTACC
ATTTTAAGCTAGTCTGATCCAAATTATTTAAATTCCCGAACtcatatcaa
aattttcttaTCAGGTTCCAAGAGAGTTTGATCTTCCAGACACTCATTCT
GAACGACgtctaaaaacaacaaaaaccacAAGAAAAACTGTCCCAACGAC
TGAAGCCAAAACAACAGCTGAACCTGTGACAGATGAAAACATAGCTACAG
ACACACCAGCACCAGTTATCGATCAGAATCGCCAAACACAACTCCAGCGT
CAACAACATTTGAAAGAGTTTTGCCAAAACAATCGAAGATTACGGACGGA
AAAGTTCAAAATCCGAGATTTCCATTTCATATATAGCGACAAAGCGTCCG
CTCTATATTGTTATATCCCAAAAGTGGCTTGCACTAATTGGAAAAAGGTG
TTCCAAGTGATGGATGGGAATTATGAAACTCCTTTAGATATCAAGGGTAA
agaaaaagttcattatttaaaGTTCAATACTTTTGAGAAAACGAATTTAA
CTGAAATCGAGTGGCGTCGAAATTTGTATTATTCTTTCTTGTTCATACGG
CACCCCTTTGAAAGGGTTTTATCAGCATACAGAAATAAGTTTCAAGATCC
CTACAACGAACAGTACCAACGTGTGTACGGCTCACGTGTTTTACGTCTGT
TCCGTAAGAACCTTACGGAAGCCGAGTACAAAGCCGGGAAGAACGTCACT
TTCCGAGAATTCGCCGATTATGTTATCCGAGTTCATACGAAACGAGAATT
TGTAAACGAGCATTGGGACACGATGCATAATTTATGCCACCCTTGTCGTG
TGAAGTATGATTATATTGGCTCAATGGACTCACTTATCGAAGACTCGGAG
ACGGTTCTAAAAGAGATTGGTTGGTATAATCgagtcaaatttcccgccaA
AGCAACGGATAAATACAAGAATAAATTACCCACTTTGATGAAGCAATATT
TTTCACAATTACCGAGAAATGTGACAATGAAGCTGTATAAAATTTATGAA
GctgattttaaagcttttggaTACTCGGCCGATGAATATCTGTAGGGATT
AACAAATTATAGTTCAGTTTTTAATGCACATCTTAGATACTTTATTTTAT
TCCTTTAAGATATTTAGAGATTAGAAATTTCGAAAGCATTACAAAGAATT
TACTCCACACAGAAATGGATGGTTGTAGTGATTGAGCCGATGATAACATG
TATAACAGTTTATATCAGAACCTTTGTGCAACTTTAAGCCTATTATAAAT
TTGCTTTTATATCTATTcaacatcaaaatctaagagtaAATGAgat
Run BLAST on NCBI

transcript from alignment at scaffold_156:38588..42103+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049393 ID=TCONS_00049393|Name=TCONS_00049393|organism=Clytia hemisphaerica|type=transcript|length=3516bp|location=Sequence derived from alignment at scaffold_156:38588..42103+ (Clytia hemisphaerica)
ATAGCGGTGAGAGACAGTGAGAAAAATGCTAGATCACCATGGAGGAGGAA
ACTCTAAATTACAGAGACTTTTCTTGGTGCTTCTCGGTGGGGTGATTGTT
TTGTTGGCATTAGAAGGATTGTCGATGGTCAGAAGTGAAGCAAGGTGTAC
TATACAACAAGGTAGGAGAATGTTCTTTTGATctacacacccccttctca
cggaCCTACTGGGACCCCTtgtcactggaaaaattggccaaaatatcatc
ccgGGTGGAGAATTGTTCTCTAATATTGGCatccgctgaaaataatcaat
tggtatattatgctattttttccattcccactgaattttctggcttgaaa
acaatagaattcaaatccccagctataaaaaaatatgggaatatcaattc
ccatcgtcctcaggccctttaagtggatttcttttcggaaaaaaagttga
ttctactaaccatttttgaaacatcattactctttcaaaaaaaattattt
tcaaaattgtttttcaacTTCATGACGAGAAAAGATAGAATTTTAATATG
GTTACAATGATACCCATCAAGTCGGTGAAAAATTTACATAGAACTTCATT
AATGTGgaaaaaatcgctaaaaaatacataaaatggcGCCTCCGCGGGAT
ACAGCGTTGAGCTTTTCACCTCAACTTTTNATATGGTTACAATGATACCC
ATCAAGTCGGTGAAAAATTTACATAGAACTTCATTAATGTGgaaaaaatc
gctaaaaaatacataaaatggcGCCTCCGCGGGATACGGTGTTGAGCTTT
TCACCTCAACTTTTGTACACGAGTACTTCAAGCAGGTGGCTATTCGAAAC
TACCTCAATAGTGAAAGATATATTTGTAGTCTTTTCTCTATGCAAGAAAG
AATTACCAAAACTTCAGTATTTTCACTTGAGTTCAAAGTTCAAGCCGTAT
TTTAACTATATTGCACAATGAAACCCTCCACTACAGAGGTACTTTCAATA
TACTTGCTCTCCTCCCTACTgccttggaaaataaaaatcacGAATTTCCA
ATTTTGTATCGCGCGGAATGTAGGAAAAACATAGTTTCTCCaagaaaata
ctcaaaaaaaggAAGGTACAGGCCAATGGGTAAACCTGTTTGTTAAAAAT
GGTTGATTGACAAGTAGATTCTTACGCAATAAGCCAGTaatcaaatttat
aaagaagACGCACTTCTTTCGTTCTTTTGAGCATAAACCAATTAGCTCTC
tctcttatttttttcttaaaagaatgtttacaagaataagatttcgttta
ttaaataatcttttaaaagtgttgATTGATGCGTGAGGCTTTCTCATTGA
ACATACAACTCTGTCGGTGTTTTTTTAGACTGTACCAGAGAGATCTTAGA
AAAGAGGGAAAAGACAATTTTCGTTTCAGAACCACTTAAAGGGCCTgagt
ctgttatttttacccccactggctgaaaatgTGTATCTACCCCTATTACT
TTGAAACAGCCATGTCTCATATCGACACAAATTCAAGTCCAAGTTCAATC
TGTATTTAGAACCAGTTGCACCTCTTTTTGATCTTACTGATGGACATTTG
TGCGAATCattaaatcataaaaaaagcgGACAGcgagggactgggttcga
ggtTAATCCGAGTGGGAAATGAGTTTCTGTATTTCGGCCAaaagaataaa
atgaaatagGATTTGAAGAGCAAATTTAGTGCTTACGTCAAACTAGCACA
CTAGCCCTTTAAGTAACTACCGATGTCGGCATTTGTATGTATTTCAGAAA
ATAAAGTTAAATGTGATGGTAAATTCTCTTGTCGCTCATGttggcatatg
ccgacatctggtaaataggtcgaaccttcttttttcctgacaaataggtc
gaaccttaaaaaatacgcaCGTCATTAAAGGgcttttacatttgaaaatg
aCCACCGATGTCTTCATTGCTTTCATTTCAGTTCCAGTTGTGATACAACA
AGGAGATAGGCGGGAAAAGGTAAATTCTTGATTTGTATCAGCGTTCCCAA
TTtcaacttttatttaaaagctgTTTCTATTTAGTACAAACTACGCAGCA
GTCGAGGTTATAATGAAAGATTATTGTGGAAATTTGTCCTAAGAAGTGCA
CAGTGTAAAAAATCTCAGCCAAGCCCGCTATCCCGAAGTTTTAAGCTCGT
TTCGACAAACACTTATTACCATTTTAAGCTAGTCTGATCCAAATTATTTA
AATTCCCGAACtcatatcaaaattttcttaTCAGGTTCCAAGAGAGTTTG
ATCTTCCAGACACTCATTCTGAACGACgtctaaaaacaacaaaaaccacA
AGAAAAACTGTCCCAACGACTGAAGCCAAAACAACAGCTGAACCTGTGAC
AGATGAAAACATAGCTACAGACACACCAGCACCAGTTATCGATCAGAATC
GCCAAACACAACTCCAGCGTCAACAACATTTGAAAGAGTTTTGCCAAAAC
AATCGAAGATTACGGACGGAAAAGTTCAAAATCCGAGATTTCCATTTCAT
ATATAGCGACAAAGCGTCCGCTCTATATTGTTATATCCCAAAAGTGGCTT
GCACTAATTGGAAAAAGGTGTTCCAAGTGATGGATGGGAATTATGAAACT
CCTTTAGATATCAAGGGTAAagaaaaagttcattatttaaaGTTCAATAC
TTTTGAGAAAACGAATTTAACTGAAATCGAGTGGCGTCGAAATTTGTATT
ATTCTTTCTTGTTCATACGGCACCCCTTTGAAAGGGTTTTATCAGCATAC
AGAAATAAGTTTCAAGATCCCTACAACGAACAGTACCAACGTGTGTACGG
CTCACGTGTTTTACGTCTGTTCCGTAAGAACCTTACGGAAGCCGAGTACA
AAGCCGGGAAGAACGTCACTTTCCGAGAATTCGCCGATTATGTTATCCGA
GTTCATACGAAACGAGAATTTGTAAACGAGCATTGGGACACGATGCATAA
TTTATGCCACCCTTGTCGTGTGAAGTATGATTATATTGGCTCAATGGACT
CACTTATCGAAGACTCGGAGACGGTTCTAAAAGAGATTGGTTGGTATAAT
CgagtcaaatttcccgccaAAGCAACGGATAAATACAAGAATAAATTACC
CACTTTGATGAAGCAATATTTTTCACAATTACCGAGAAATGTGACAATGA
AGCTGTATAAAATTTATGAAGctgattttaaagcttttggaTACTCGGCC
GATGAATATCTGTAGGGATTAACAAATTATAGTTCAGTTTTTAATGCACA
TCTTAGATACTTTATTTTATTCCTTTAAGATATTTAGAGATTAGAAATTT
CGAAAGCATTACAAAGAATTTACTCCACACAGAAATGGATGGTTGTAGTG
ATTGAGCCGATGATAACATGTATAACAGTTTATATCAGAACCTTTGTGCA
ACTTTAAGCCTATTATAAATTTGCTTTTATATCTATTcaacatcaaaatc
taagagtaAATGAgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031352XLOC_031352Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049393-exon-scaffold_156-1491911889:38588..38748TCONS_00049393-exon-scaffold_156-1491911889:38588..38748Clytia hemisphaericaexon
TCONS_00049393-exon-scaffold_156-1510915933:38588..38748TCONS_00049393-exon-scaffold_156-1510915933:38588..38748Clytia hemisphaericaexon
TCONS_00049393-exon-scaffold_156-1575043694:38588..38748TCONS_00049393-exon-scaffold_156-1575043694:38588..38748Clytia hemisphaericaexon
TCONS_00049393-exon-scaffold_156-1491911889:40569..42103TCONS_00049393-exon-scaffold_156-1491911889:40569..42103Clytia hemisphaericaexon
TCONS_00049393-exon-scaffold_156-1510915933:40569..42103TCONS_00049393-exon-scaffold_156-1510915933:40569..42103Clytia hemisphaericaexon
TCONS_00049393-exon-scaffold_156-1575043694:40569..42103TCONS_00049393-exon-scaffold_156-1575043694:40569..42103Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_156supercontigscaffold_156:38588..42103 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.158026	0	0	0.285489	0	0.3209	0	0	0	0	0	0.0785684	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00049393 vs. Swiss-Prot (Human)
Match: CHSTB (Carbohydrate sulfotransferase 11 OS=Homo sapiens GN=CHST11 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.736e-53
Identity = 94/243 (38.68%), Postives = 139/243 (57.20%), Query Frame = 3 
Query:  723 HFIYSDKASALYCYIPKVACTNWKKVFQVMDG--NYETPLDIKGKEKVHYLKFNTFEKTNLTEIEWRRNLYYSFLFIRHPFERVLSAYRNKFQDPYNEQYQRVYGSRVLRLFRKNLTEAEYKAGKNVTFREFADYVIRVHTKR-EFVNEHWDTMHNLCHPCRVKYDYIGSMDSLIEDSETVLKEIGWYNRVKFPAKATDKYKNKLPTLMKQYFSQLPRNVTMKLYKIYEADFKAFGYSADEYL 1442
            H +  +    +YCY+PKVACTNWK++  V+ G   Y  P++I   E        T  + ++ EI  R   Y  FLF+R PFER++SAYRNKF   YN  + + YG+++++  RKN T+   + G +V F EF  Y+I  HT+R E  NEHW T+++LCHPC + YD +G  ++L EDS  VL+  G  + +KFP  A  K       +  ++F  +      +LY++Y+ DF  F YS   YL
Sbjct:  109 HLVVDEDHELIYCYVPKVACTNWKRLMMVLTGRGKYSDPMEIPANEAHVSANLKTLNQYSIPEINHRLKSYMKFLFVREPFERLVSAYRNKFTQKYNISFHKRYGTKIIKRQRKNATQEALRKGDDVKFEEFVAYLIDPHTQREEPFNEHWQTVYSLCHPCHIHYDLVGKYETLEEDSNYVLQLAGVGSYLKFPTYA--KSTRTTDEMTTEFFQNISSEHQTQLYEVYKLDFLMFNYSVPSYL 349
The following BLAST results are available for this feature:
BLAST of TCONS_00049393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHSTB1.736e-5338.68Carbohydrate sulfotransferase 11 OS=Homo sapiens G... [more]
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