TCONS_00049405 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049405
Unique NameTCONS_00049405
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049405 ID=TCONS_00049405|Name=TCONS_00049405|organism=Clytia hemisphaerica|type=transcript|length=4534bp
gttttctttttcataaaaagcAGCTGATATATCTGTTTCACCGATTGGTC
ATTGTAGTCAGTATTTTATGCATCTAAAAGTCGACGGAATATGGTCGCCG
ACATTATtatgtaaacaaacaaaatggcggaaAAGATTATGGATTTTGCA
GACAAGAGCCCTCCTACTCCCGACTCGGACTCACCGTCTGAAAAGGCTTG
GAAATACCTTAGTCACAATGATATCGTTGATGTAATTCAGtcACTGACTT
CAAGCGTTGTAAACGAGCGACCTGAAAATTTGTTGGATTTCCTACTCGAG
AAGTTACATTACCAAACGGCTTCGAGTCAATCGATAGAGGAGAAAGCATG
AATTTGTAGATTTGGTAGTGATGATTTTCAATTATTTGTTATTCAATGAG
CTTTGGAAGTTTGAAAATTGCTTGTTTAACAAAGTTATGATATGCAGCGT
TAATATATAATAATCGTGTAAGCTGTTGCAATTTCACAATTTTGGACGAA
GTACGATGAGAATAGGATTTATCCTGAAAACTCATACGTTCTGGATTATC
TTCTTTTCGGATTAACAAAACATACGAATTTAACGGGCTCGATCATTTGA
ACTTAGTATTTGGCCGTGTAAGCTTCGATTTAAAATTCTGTCCAATTATT
TTCTAGCGATTTTATAACCCTTttaaaaaggccaaaaattgaaataaata
gcAACTTTGAGTTTTCACCTTGAAAAACATTCCTACattgttttcttgaa
ttttgggAGTAATTTGGTAATTGATCAAGTCTCCTTGaagtaaagtctgt
ctcaatataatctgcagtggAGACACAAACGCTGAAACACTTTCGATATC
ATTCGAATGAAATGGTGgtttgcactttttgaaaagataataaggagttt
gatattttaaaaagatttcaaaaaaatagaaaataaagatgagacataaa
gaagaaaaagattcaacttcttgtagaattgtCCTATGACGTTCACTTTC
ATATTATaaaatcttcaatcttagaggatgcgaaaaaaaaaatttaaata
tttattcAGCCAAAGCTAACTTTGGGATGTATCTTTTGAGTGAATTTATT
atctttgaataattttttcactGAGATGATATTCTTAAATAAAAGAATTA
CTGTTTGGAAATTGGAAATTACAGTTATTCACGAAGCTGAATTTTtcgtc
ttcatttttcatctttttttccctttttttgttTGGTAATTTTCCACttc
tgaatatcttttcaaacaaacgctaaaccgctatctaattcaaattctat
caaaggtTACAGGTTTTTTGTCTCTGCTGCATTATATTGAGGCAGACTTA
CGTAGACCTTTTATTTCGGACGGCAAATGTTAGTCGCAGGAGTTCAATTC
TTCAAATTATATTAAGTTTTATCgtattggtttgtttttttgtttttttt
attttccaattttaaaCTTTCCAATGGTGTATAAAAATAAATGTAATGAT
AAAGTGTCAACCTAAATATTAAATTTGCTGAAGTTTTCTGCGTTGTACGT
TCCTTGTTAAACCATGATAGAGAATGTTCCTTTCGACCGTTCCAAAATAC
TTAATGCGTAATAGAAATGCctctgatttttttgcttcgtacaggCCCTT
TTGGTTTATGAAAGGTCAATTAGCCTCAAATGGGGCCACAAAGAGGTTAG
GtttgcaagaataaagccaagTGAACTTGAAAACTGATTTTCATGTGCGT
ATGAattcgaaaatttgaatttgtataaaaattagCCAATAAAATTCAAA
TCGCCAGAAAAATAGGTCAAGTAGATAATTTCGTTCCTTCGCATGTTTAC
TTGTCAGCTCAGTAAGAATCATTTGagatagtattttatgtttcttCAGT
TATTATATCTTACGAAGACGAAAACATTTTGGTTCGATTTTTTTTGTGTG
ATAGATTCAGGATacttaatttttccttttcattgaaTAAGTCATGTGAC
CGTTGTCTTCCCTCGAGAATTAGATTCCTTAGGCTATCAATGACTAAACA
AATCtttgtgataattttttttttacaattttatttatttccatACATTT
TATTTCTAATCATATTACTAATTTGCTAATTTAATATTAGAATAATGGAC
AAGAAATAACTGAGTGAAAACTATCCATCAAGTAAGATCCGAGGATATTA
TGGTCAGGGGATACTTGGTCTATTTGCGTGCCAAGCCTTCGGATGCAGAA
CTTTTGTCACTTTTGACATACTTTGGTTCACAAGAAACCCCCCTTCCCcc
tcgcttgttaatttttcgaaaactttccaACCCCTCCCCCCTCCCCTTCT
GGACCTGATTTGTGCCTTtcttttttaccttattttttggttttcagaag
tacaatgtCTAACTCTTCCCAgcaattaccccccccccttccgaTGACTT
TTACAAACTTGAATAATCCTagaatttagaaatattttttaatcaacATA
TTCGTCTGTAAGAATTGGCATAAGATACTTTCTATCAAAAGCACCATAGG
TTCTGACAAGCCATGACTTTTCATATCTCTTTTTTTCAGCCCGATCTTCA
GGTGTACTTCCTGGATCATCCAAATTAATCAAGCTCAATCGTTTAGCTTT
AAATTCTTCTTCTACCTCATCAATTCCAGTTTCAAGGTTGATCAACTTGG
CGAAAGGGAGGGTCAAGCCACCAAAAAAGATGACTGACACTAAAACAATC
ATTAGTGTAGCTGTAAGCATCATTTGCCGTGGAACTGATACCGTATTTCG
AATAGCCAATGAGAAAGCGATAGCTCCTCGAAGACCCGCGAATGTCATCA
TATTTTGATGTTTGCATGGAATCTTTCGTGTCCTTCCACAGTTCAATAAG
AGTGAGAGtggataaatattcaaaatacgaCCAATTTGAGTGGCCAAGAA
AGCCACTCCAATAAATCCGAAATTCCATTGGTGAaagttgaataaaaaaa
aagacagACCGATGtacgaaaaaatgaaattctccgCCAAGAAGTTTAAT
AACTCGAATGTTTGAGTTGTACGTATCGCTGATTCAGGCGTCAAATTTTT
GTACGTGTAATGTTTTTGTGCTATACCACAGAACAGCACTGCTACTATAC
CAGACCAGCTGAATACTTCTGCTGCCAAGAACGTCACATACGACATTAGG
AAAAAGAGAGCTGTTTCGAGAATAGGGAACATGCCAATTTTGGTGAGTTT
GGAGAGGAGGGCAGTAAAACAAGCGATAAGGATGCCAATAAACAATGATC
CAACGAAAATAGAAACAAAGTCGCCCAATGCGTAGAAAAAAGAGTAAATA
TTAAATTGTCGTTGGTCGTATGGGTTGTACGCTAGATAAGCTTCGATGGC
GCGATACAATACGATAGCCACGGCGTCATTTAAAACACTTTCACCGAATA
TCAGAGCGTATAAATCAACATCGACGTGTAAATCATGGAAGATAGCTAGT
ACTGTCACTGGATCTGTCGCCGATATCATTGCTCCGAACAAAAGACATTC
GGTGAAATCAAATGTTTCAATAACTCCAGTCATTCTGTTGAAGTAGTATG
TCATCACACCCACCACCAGACACGAAATACTTGTTCCAAAGAAAGCATAA
ACGCAAATTGCACCAAGGTTACGGAAGAAATAGCGTCGTTTCAAACTGTA
TCCACCAAAGAAAATGATTGGCGGTAGAAGCACGTAGAAGAAAATTTCCG
GGTTAAATGATGATTTGTCTTGCAATTCGTTGCCACCCTCGTTTGCGCGA
TTGTTAGTGGAGTGTTGCACGATACCACTCAACACATATGAATAATCTGT
CCCGTTTATTTTCATCCACATATTACGGGGTGCTGTTGTTAAGTTCTCAC
AATTGCTAACATGGACGAACTTTTCCACGTTATCTTTTTCTTCAGACAAT
CTGATGATCCCACCAACGATTATTCCAAACAGCATGGCGACTCCAGTCTC
GTGGAACACACTGAATCGACGTAGTTTGAACAACCAGATTACCAGCACAG
TAGCAATAAGAAGACCGATTAAGATCATCATACTCAAGCTGTCTGTCTTG
TGACTGCTCGAAAGTTCTTCTTCTTTCAGGCCTTCAAGAGAAACTGAATC
ATCAATCATGTCGAAAGCCATGCTTACACTTTGAAACAATTGTAGGAACA
AGAGCCCAACTTTCATTCGTCCACGGTCAAACATAATTGCATCGATTGAA
ATCCAACTTAgtcttttgactttttcaaaatctttctcaAGAATTTCAGA
TAATGCTTATGTGAGTATATCAATTACGCTAAAAATTGCTTATTGGAGCG
AATCGGTTAGGCTAAAACAAATTAGGTTGTTTGGTGTATGCTTGTATAAA
TATGTTTATTAAAGAATTTACTAAGGAGTGTCTTGgagatttcctaagca
taatTTTGAAGGCCCCCCAAACGGTTTTCGTGATGCCCGGGGAGACATAC
TCGCTttaaaaacgaccgtacgtgaGGACCAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_157:11612..29190-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049405 ID=TCONS_00049405|Name=TCONS_00049405|organism=Clytia hemisphaerica|type=transcript|length=17579bp|location=Sequence derived from alignment at scaffold_157:11612..29190- (Clytia hemisphaerica)
GTTTTCTTTTTCATAAAAAGCAGCTGATATATCTGTTTCACCGATTGGTC ATTGTAGTCAGTATTTTATGCATCTAAAAGTCGACGGAATATGGTCGCCG ACATTATTATGTAAACAAACAAAATGGCGGAAAAGATTATGGATTTTGCA GACAAGAGCCCTCCTACTCCCGACTCGGACTCACCGTCTGAAAAGGCTTG GAAATACCTTAGTCACAATGATATCGTTGATGTAATTCAGGTATCTATTT ATCTATCTATCTATATATTTCATACTAAAAGGTCCTAGGACCCATTATCC GTACCTTTGTTTGTTTTAAAAAATGAATAAATAAATAAATGAAATGTTAA GTTAAGAGCAATAAAATATTTTGAAATTTTGATTAATGCTTGATAACGAG AAAAGAATGAATAGGATAAGTGGAAAACCAAGCATACAGCCCTGCGTGCT GTGATAGATTGTGCTTGAGACTAGATTTAATATATATAGAGAAGTACTAA GAAGTATTAAAGCTAGCAGAAAGAATGTAACTTGAAGTACAGTAGCCTCA GTGCTGGGGTAAACATAGGAGCAGGCAGGGGGGGGTCGGTAGTAAAATCT CAGACATAATGACGTTTACTACGGTGGTGGTGTGACGAAAAATCGAAAAA AAATTTTACTACCCAGGGTAGTTAAATACNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 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CGTTTCAACCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTGTAG AGAGACATCTACCCACAGTCAAACTTACCAAACGTCAAGTTAGATCAAAA ACAAAACCATGGATAACGCCAGGAATTTTGAAGTCAATCAAAAACGTGAA CACTACCATACAACACACGCTAAGGCTAAAACTAAGGAGTCCAAAGATCG ACTCTATGAATTATATCGTAGATATCGAAATATGATAGTCACTTTGACTA GGCGTAGTAAAAAAAACCACTACATCAGATATTTTGATTTCCATTCTAAA AATTCTAGAAAAGTCTGGTCTGGTGTTCGCAATATAATCTCAACAAGGGC TAACTCAGAATCACCCATTTCAATCATCACAGGTGACTCTTTGACATCAG ATCCTGAGAAAGTAGCCAATTCCTTCAATGATTNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 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NCTGGAGCCTTAGTTTTAAGCTTATTCTGAGCTCCATACAGGGCTGAGCT GGTTCCCAATGGTTCTAAACCTCGTTGGACACTCTCCTGCAATAAATTAG ACCCATTGAAGTCCAAGATTTCTAAAAATAACAAGATATTTTTAATCTGT CACGGAAGGACAAGGTGAAAGTGTCACGGAAGGACAATAATTTCAGACCT TGTAAGTGAATATGAAGGAGGTTGCTTTGGAATGTAATGTCATTTTTTGT TAGGGGGCACCAATAGTTAGAACTTGCAATAATATCAAGAATAGTGTACT TGCACAAAACTGGGAAAAACACTTTTTGTCTTGAAATTGTCATGGAAGGA ATTCGATATTTGAAAAAAGTTTCTGCTTGCAGTACTTTTTTGTTGTTTGA CTTATTTCAAAATGAAAAAACCTATTAAACTAACTAGGGTATGTACTTGT TTTAAAACGACATTTCATTTTTAATTAATCATTTATTTTTCAAAAGAAGG TCCATTATATTTTAACACTTGTCCTTCCGTGACAAACCTCACTAGTTGTA TTTCGATATAATCACCTGATTACAGAGACTAAAAGTGCGACTCAGTTGAT TTAAAAGTTGAAATTAGAAAATTTAAGGGTTAATTTTACAAAAAATCACA GTTACTTATTTTGTTTGTAAGATTTTTGATTTTGTGTTTTGGTTGACGAC TTTTCAATTTGGCCCTGGTTCCGATCTTACCTCACTAACCGCTCCCAGTA TGTTTCTCTTGCAGGCTCAAATTCCCTTTTAAAATCTATTAATCATGGAG TTCCTCAGGGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNAAGCTTTCGCAAAGTCATTTACTGTTAACAAAAGTTGAGATTCA CAGGATCTTTTTTCTCTGAAACCATGTTGCAACTCTGACAATACTTTGTT TTCGGTTAGGTGCGACATTACTTTACTGTAAAGTATGTGTTCTAGCAATT TACAAACGATGGAAGTAAGTGATATTGGTCTGTAGCTTTCAGGATTACTT CGACATTTCCCATTCCCTTTGTATGCTGGGACAATGAGGGCATGTTTCCA AGCTGTCGGGAGTTCAGATTGTTTTAGAGAAGCTTCAAAGATAAGTTTCA GGGCAGGAGATATTTCATCTGCAAACTCGATGAGGAATCTGGCTTTAATG GTATCTGGGCCGGTTGCTTTATGTGGCCTGAGGGATATGATGAGTTTCTT AATCCCATCAACCGATACTGTAAAGTCACTCATTTGATTGGCAACTCTAT TAGGTATGGGTGGAGTTTTACCGTCTGGGTTGGAGAAAACAACAAATTTA TCCTTCGATTACCGTACTTACCTTTAATAATTCAAAAGCACCAAATTCTG CAAAAATTGGAATAGTATTGTGGTATAGCCCCCCCCCCCCCGGAGCAGAC TTTCCAATTCAGTACAATTAATAACTTTTTCCAATCAATGGCTACGTAGG GGGAGGTGTTAGAAACTAAAAATCAACCTATCTTTATGAAACCCTGGGAA AAGTTGCCGTTCTGGGTGTTATTATATTAACAATGAAAAAAATTTTTTTT TGCTGGGACCATTTTAAAGGCTTCCAAATTAGCCCTTTTTGACCCCGAAA CCGCCCTACAAGCAAAAATATATTTTTTTTCCTCAAAACATATAAGTGTG GGTACTTGTTGGAATGAAAATTTGATGCTGATCACTTTTTTATAACAAAC ATACCCTAAAAATAAACTGAGAAAGAGTTTTTCCATAAAAACGCTATTAA CGACTTGTAAAAGCACGCAATTTTCTTTGTTTTTGTTTAAAATGAAGTTT ATTAACTGTTTACAGGAGCAATATTCCTAATTTAATTTGAAAGTTCTTCA GCAAATGCTTTTTCAATAGAGCAACGAATTCTGACTCCTGATTGGGTGTA TTTCACTTCAAACCCAGATGCCATTATTTGCTCAAAGGAAGTTTGTTGCA CTTCAACCTCCTCTGGGAATACCCAATGAACACCAACTTTATCAGTTTGC TTTAAATATGATACGTTTGCGTGATCACCATAAACATCACAGACAACACC TATGATAATAATTAATATATATTAATAATGTATGCCTCAATAACATTTAC TTTTTGAGAGACTGGTTTCCAGAGCACAAAAGTAACACTAAATTACCTAA ATACCAAGAATAAGTGCCATCATCTTGTAGCCAAATTGCTGCAACATGTT CTCCATTTTTCAACATTTTTGAACCGTTTGAATTATTACCGTTGTTGTCT CTTTCGTCTTCTTTTGGAACACCTGAATTTATATAAAATTTATAAAATTA GATAGAACTTGGTAAACATGAAATTGTTTTTCAGAAACTTAGCTGTTACA TGGGTGGTAAGGCTGAGCACAATTTCGTTATTACCTTGTAGAGATCCCAA TACATTGTTCAAGTCAGTTATGGTTAAGGATGCCATGTTCTATGAGTCAT CAAGGTACTCCATCAAATTAGATGCATACTCTTCAGTCTCAAGTTTCTTG CCTCCTCTTTTCAATCGAAAAACCTTTGCTGTTTCCTTGAGTGACAAACT TGTGCATCTTGCGTACCTAACCTCAACATACAACCTTGAGTTTTTTTCTT TGTTTGAGAAATTTGTGTTCTTCAAGTAATCTGCAACATCTTCTTTCTTA GTGAACGGTCCTCCCAAGGTTTTCAGAAAGTCTAAATCTTTGATCTTTGC TGAATCTTTCTTCGCATTTAAAACCTCTTTAGCATCGTATCCCTTTTTCT CAAGATCTTGCGTATTTTTGTTCAAGTTTAGTTTTAATTCATTGATGGCA ATCGATTGTTTTCTGTAGGAATTCAACTTTTTAGGGCCAGCAGCTTGCAA GAGGTCCTTCGCTCTAAATGTAAAGGAATGTTGAGTGTGGAGTGTATTCT AAATTGGAATATTTAGCACATTTTCAACATTCATTCGAGTTTTCTATATA TTACTTTCATGTAGGAATCAAAAAGGTAAATATTATAATGAATTATATTG ATCAATCGATTATGATAGATCCATAGTGTCCTCCAGGGTTTGTTCCCTCC ACCAAATTCTTGATTTTTTTTAAATCTCCCCCCTCTTTTTTTCCCCCTAT GACTTTTCAGTTTTTTAGTTTCCCCCCTCTTTTTTGCTTTCCCCCCAGAA AATTCTGAAAATATCATTTTCCCCCCATATACCCGTATAAATTTCTCAAC TTTCAACCTATGTAACACAAACATAAAATTTTGCTGCAAAAGGAATACTA GACAAAATAGAACGAAAATTGGTTAATTTTTCAATCATGATCTAATCACA TGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNATAGCTATAATATATTATAATTACATTTCATGTACTCTCGGGTACCT AATAGCCGGCGAGGTTGGAAAAAATCTCAAAACTTAATAAGCGGGGGGGG GATGGAATAAAAATGTCCTTGGTAGAAAACTTTTGAAAAGGAGGCTAATA CAGCAGAATTAGGACAAAAGAGGGAACTTCCAAAAACATTTTCCCAAAAA TTTATAAGCGGGGGTTTGGAATAAGAATGTCCTGGGTGGAAAATTTCGAA AAATTAATTAGCAGAGAGGGACGGCTATTAGGTATCGAGAGTACTTAAAT TTTAGATATAACATTACTAATACATGCTAATATATGAATTTAGTAAATGA AAATCAAACTTATGTAAAGATTTTGATAAAATGTCAAAATATACCACTTT GAAATGTTTACTGTCGTCAAAGAAGCGCATCACGAACTCCAGGAAAGGAA ATGTTATGTTTTTACCCAACAGGGCTAGGTGCAAAGTTTCCCATTTCAAT TGCGCTTTTGACTCTGACCTCATGTAGTTATCTGTCCACATCTGTCTTGT CACGGCACAGAAGGGAGAAAGGGTCGCGAAGTCAATATTGAAAAGTTAGA TCTAACAATTGACTCTTTCGTTTGTTCTTTTTTAGTCACTGACTTCAAGC GTTGTAAACGAGCGACCTGAAAATTTGTTGGATTTCCTACTCGAGAAGTT ACATTACCAAACGGCTTCGAGTCAATCGATAGAGGAGAAAGCATGAATTT GTAGATTTGGTAGTGATGATTTTCAATTATTTGTTATTCAATGAGCTTTG GAAGTTTGAAAATTGCTTGTTTAACAAAGTTATGATATGCAGCGTTAATA TATAATAATCGTGTAAGCTGTTGCAATTTCACAATTTTGGACGAAGTACG ATGAGAATAGGATTTATCCTGAAAACTCATACGTTCTGGATTATCTTCTT TTCGGATTAACAAAACATACGAATTTAACGGGCTCGATCATTTGAACTTA GTATTTGGCCGTGTAAGCTTCGATTTAAAATTCTGTCCAATTATTTTCTA GCGATTTTATAACCCTTTTAAAAAGGCCAAAAATTGAAATAAATAGCAAC TTTGAGTTTTCACCTTGAAAAACATTCCTACATTGTTTTCTTGAATTTTG GGAGTAATTTGGTAATTGATCAAGTCTCCTTGAAGTAAAGTCTGTCTCAA TATAATCTGCAGTGGAGACACAAACGCTGAAACACTTTCGATATCATTCG AATGAAATGGTGGTTTGCACTTTTTGAAAAGATAATAAGGAGTTTGATAT TTTAAAAAGATTTCAAAAAAATAGAAAATAAAGATGAGACATAAAGAAGA AAAAGATTCAACTTCTTGTAGAATTGTCCTATGACGTTCACTTTCATATT ATAAAATCTTCAATCTTAGAGGATGCGAAAAAAAAAATTTAAATATTTAT TCAGCCAAAGCTAACTTTGGGATGTATCTTTTGAGTGAATTTATTATCTT TGAATAATTTTTTCACTGAGATGATATTCTTAAATAAAAGAATTACTGTT TGGAAATTGGAAATTACAGTTATTCACGAAGCTGAATTTTTCGTCTTCAT TTTTCATCTTTTTTTCCCTTTTTTTGTTTGGTAATTTTCCACTTCTGAAT ATCTTTTCAAACAAACGCTAAACCGCTATCTAATTCAAATTCTATCAAAG GTTACAGGTTTTTTGTCTCTGCTGCATTATATTGAGGCAGACTTACGTAG ACCTTTTATTTCGGACGGCAAATGTTAGTCGCAGGAGTTCAATTCTTCAA ATTATATTAAGTTTTATCGTATTGGTTTGTTTTTTTGTTTTTTTTATTTT CCAATTTTAAACTTTCCAATGGTGTATAAAAATAAATGTAATGATAAAGT GTCAACCTAAATATTAAATTTGCTGAAGTTTTCTGCGTTGTACGTTCCTT GTTAAACCATGATAGAGAATGTTCCTTTCGACCGTTCCAAAATACTTAAT GCGTAATAGAAATGCCTCTGATTTTTTTGCTTCGTACAGGCCCTTTTGGT TTATGAAAGGTCAATTAGCCTCAAATGGGGCCACAAAGAGGTTAGGTTTG CAAGAATAAAGCCAAGTGAACTTGAAAACTGATTTTCATGTGCGTATGAA TTCGAAAATTTGAATTTGTATAAAAATTAGCCAATAAAATTCAAATCGCC AGAAAAATAGGTCAAGTAGATAATTTCGTTCCTTCGCATGTTTACTTGTC AGCTCAGTAAGAATCATTTGAGATAGTATTTTATGTTTCTTCAGTTATTA TATCTTACGAAGACGAAAACATTTTGGTTCGATTTTTTTTGTGTGATAGA TTCAGGATACTTAATTTTTCCTTTTCATTGAATAAGTCATGTGACCGTTG TCTTCCCTCGAGAATTAGATTCCTTAGGCTATCAATGACTAAACAAATCT TTGTGATAATTTTTTTTTTACAATTTTATTTATTTCCATACATTTTATTT CTAATCATATTACTAATTTGCTAATTTAATATTAGAATAATGGACAAGAA ATAACTGAGTGAAAACTATCCATCAAGTAAGATCCGAGGATATTATGGTC AGGGGATACTTGGTCTATTTGCGTGCCAAGCCTTCGGATGCAGAACTTTT GTCACTTTTGACATACTTTGGTTCACAAGAAACCCCCCTTCCCCCTCGCT TGTTAATTTTTCGAAAACTTTCCAACCCCTCCCCCCTCCCCTTCTGGACC TGATTTGTGCCTTTCTTTTTTACCTTATTTTTTGGTTTTCAGAAGTACAA TGTCTAACTCTTCCCAGCAATTACCCCCCCCCCTTCCGATGACTTTTACA AACTTGAATAATCCTAGAATTTAGAAATATTTTTTAATCAACATATTCGT CTGTAAGAATTGGCATAAGATACTTTCTATCAAAAGCACCATAGGTTCTG ACAAGCCATGACTTTTCATATCTCTTTTTTTCAGCCCGATCTTCAGGTGT ACTTCCTGGATCATCCAAATTAATCAAGCTCAATCGTTTAGCTTTAAATT CTTCTTCTACCTCATCAATTCCAGTTTCAAGGTTGATCAACTTGGCGAAA GGGAGGGTCAAGCCACCAAAAAAGATGACTGACACTAAAACAATCATTAG TGTAGCTGTAAGCATCATTTGCCGTGGAACTGATACCGTATTTCGAATAG CCAATGAGAAAGCGATAGCTCCTCGAAGACCCGCGAATGTCATCATATTT TGATGTTTGCATGGAATCTTTCGTGTCCTTCCACAGTTCAATAAGAGTGA GAGTGGATAAATATTCAAAATACGACCAATTTGAGTGGCCAAGAAAGCCA CTCCAATAAATCCGAAATTCCATTGGTGAAAGTTGAATAAAAAAAAAGAC AGACCGATGTACGAAAAAATGAAATTCTCCGCCAAGAAGTTTAATAACTC GAATGTTTGAGTTGTACGTATCGCTGATTCAGGCGTCAAATTTTTGTACG TGTAATGTTTTTGTGCTATACCACAGAACAGCACTGCTACTATACCAGAC CAGCTGAATACTTCTGCTGCCAAGAACGTCACATACGACATTAGGAAAAA GAGAGCTGTTTCGAGAATAGGGAACATGCCAATTTTGGTGAGTTTGGAGA GGAGGGCAGTAAAACAAGCGATAAGGATGCCAATAAACAATGATCCAACG AAAATAGAAACAAAGTCGCCCAATGCGTAGAAAAAAGAGTAAATATTAAA TTGTCGTTGGTCGTATGGGTTGTACGCTAGATAAGCTTCGATGGCGCGAT ACAATACGATAGCCACGGCGTCATTTAAAACACTTTCACCGAATATCAGA GCGTATAAATCAACATCGACGTGTAAATCATGGAAGATAGCTAGTACTGT CACTGGATCTGTCGCCGATATCATTGCTCCGAACAAAAGACATTCGGTGA AATCAAATGTTTCAATAACTCCAGTCATTCTGTTGAAGTAGTATGTCATC ACACCCACCACCAGACACGAAATACTTGTTCCAAAGAAAGCATAAACGCA AATTGCACCAAGGTTACGGAAGAAATAGCGTCGTTTCAAACTGTATCCAC CAAAGAAAATGATTGGCGGTAGAAGCACGTAGAAGAAAATTTCCGGGTTA AATGATGATTTGTCTTGCAATTCGTTGCCACCCTCGTTTGCGCGATTGTT AGTGGAGTGTTGCACGATACCACTCAACACATATGAATAATCTGTCCCGT TTATTTTCATCCACATATTACGGGGTGCTGTTGTTAAGTTCTCACAATTG CTAACATGGACGAACTTTTCCACGTTATCTTTTTCTTCAGACAATCTGAT GATCCCACCAACGATTATTCCAAACAGCATGGCGACTCCAGTCTCGTGGA ACACACTGAATCGACGTAGTTTGAACAACCAGATTACCAGCACAGTAGCA ATAAGAAGACCGATTAAGATCATCATACTCAAGCTGTCTGTCTTGTGACT GCTCGAAAGTTCTTCTTCTTTCAGGCCTTCAAGAGAAACTGAATCATCAA TCATGTCGAAAGCCATGCTTACACTTTGAAACAATTGTAGGAACAAGAGC CCAACTTTCATTCGTCCACGGTCAAACATAATTGCATCGATTGAAATCCA ACTTAGTCTTTTGACTTTTTCAAAATCTTTCTCAAGAATTTCAGATAATG CTTATGTGAGTATATCAATTACGCTAAAAATTGCTTATTGGAGCGAATCG GTTAGGCTAAAACAAATTAGGTTGTTTGGTGTATGCTTGTATAAATATGT TTATTAAAGAATTTACTAAGGAGTGTCTTGGAGATTTCCTAAGCATAATT TTGAAGGCCCCCCAAACGGTTTTCGTGATGCCCGGGGAGACATACTCGCT TTAAAAACGACCGTACGTGAGGACCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031360XLOC_031360Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049405-exon-scaffold_157-1575043694:28951..29190TCONS_00049405-exon-scaffold_157-1575043694:28951..29190Clytia hemisphaericaexon
TCONS_00049405-exon-scaffold_157-1575043694:11612..15905TCONS_00049405-exon-scaffold_157-1575043694:11612..15905Clytia hemisphaericaexon
TCONS_00049405-exon-scaffold_157-1510915933:28951..29190TCONS_00049405-exon-scaffold_157-1510915933:28951..29190Clytia hemisphaericaexon
TCONS_00049405-exon-scaffold_157-1510915933:11612..15905TCONS_00049405-exon-scaffold_157-1510915933:11612..15905Clytia hemisphaericaexon
TCONS_00049405-exon-scaffold_157-1491911889:28951..29190TCONS_00049405-exon-scaffold_157-1491911889:28951..29190Clytia hemisphaericaexon
TCONS_00049405-exon-scaffold_157-1491911889:11612..15905TCONS_00049405-exon-scaffold_157-1491911889:11612..15905Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_157supercontigscaffold_157:11612..29190 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.83088 4.64485 7.37055 8.63073 6.25105 3.57394 11.8816 7.48311 4.20612 2.52455 5.53792 2.95574 5.16443 4.23394 7.41316 12.8864 12.6773 14.2107 4.39542 5.48225 16.4121 11.8556 10.7868 11.4359 4.48377 5.93074 13.023 11.3221 10.5735 10.1587
Blast
BLAST of TCONS_00049405 vs. Swiss-Prot (Human)
Match: SL9A9 (Sodium/hydrogen exchanger 9 OS=Homo sapiens GN=SLC9A9 PE=1 SV=1)

HSP 1 Score: 476.478 bits (1225), Expect = 2.990e-150
Identity = 264/526 (50.19%), Postives = 343/526 (65.21%), Query Frame = -1
Query: 2507 TVLVIWLFKLRRFSVFHETGVAMLFGIIVGGIIRLSEEKDNVEKFVHVSNCENLTTAPRNMWMKINGTDYSYVLS-GIVQHSTNNRANEGGNELQDKSSFNPEIFFYVLLPPIIFFGGYSLKRRYFFRNLGAICVYAFFGTSISCLVVGVMTYYFNRM---TGVIET--FDFTECLLFGAMISATDPVTVLAIFHDLHVDVDLYALIFGESVLNDAVAIVLYRAIEAYLAY-NPYDQRQFNIYSFFYALGDFVSIFVGSLFIGILIACFTALLSKLTKIGMFPILETALFFLMSYVTFLAAEVFSWSGIVAVLFCGIAQKHYTYKNLTPESAIRTTQTFELLNFLAENFIFSYIGLSFFLFNFHQWNFGFIGVAFLATQIGRILNIYPLSLLLNCGRTRKIPCKHQNMMTFAGLRGAIAFSLAIRNTVSVPRQMMLTATLMIVLVSVIFFGGLTLPFAKLINLETGIDEVEEEFKAKRLSLINLDDPGSTPED----RAEKKRYEKSWLVRTYGAFDRKYLMPILT 4051
            T+L IWLFK  RF   HETG AM++G+I+G I+R +    ++E    V +C  LT +P  + + I    Y Y     I QH+ N      GN + +K +F+PEIFF VLLPPIIF  GYSLK+R+FF+NLG+I  YAF GT+ISC+V+G++ Y F +     G ++   F FT+CL FG+++SATDPVTVLAIFH+LHVD DLY L+FGESVLNDAVAIVL  +I  Y    NP     F+  +FF ++G+F+ IF GS  +G   A  TALL+K TK+  FP+LET LFFL+S+  FL+AE    +GIVAVLFCG+ Q HYTY NL+ +S IRT Q FE +NFLAEN IF Y+GL+ F F  H +N  FI  AFLA  + R  NIYPLS LLN GR +KIP   Q+MM F+GLRGAIAF+LAIRNT S P+QMM T TL++V  +V  FGG T P    + +  G+D ++E  K         +DP S  ++         + E + L R + +FD KYL PILT
Sbjct:   34 TILTIWLFKNHRFRFLHETGGAMVYGLIMGLILRYATAPTDIESGT-VYDCVKLTFSPSTLLVNITDQVYEYKYKREISQHNINPHQ---GNAILEKMTFDPEIFFNVLLPPIIFHAGYSLKKRHFFQNLGSILTYAFLGTAISCIVIGLIMYGFVKAMIHAGQLKNGDFHFTDCLFFGSLMSATDPVTVLAIFHELHVDPDLYTLLFGESVLNDAVAIVLTYSISIYSPKENP---NAFDAAAFFQSVGNFLGIFAGSFAMGSAYAIITALLTKFTKLCEFPMLETGLFFLLSWSAFLSAEAAGLTGIVAVLFCGVTQAHYTYNNLSSDSKIRTKQLFEFMNFLAENVIFCYMGLALFTFQNHIFNALFILGAFLAIFVARACNIYPLSFLLNLGRKQKIPWNFQHMMMFSGLRGAIAFALAIRNTESQPKQMMFTTTLLLVFFTVWVFGGGTTPMLTWLQIRVGVD-LDENLK---------EDPSSQHQEANNLDKNMTKAESARLFRMWYSFDHKYLKPILT 542          
The following BLAST results are available for this feature:
BLAST of TCONS_00049405 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SL9A92.990e-15050.19Sodium/hydrogen exchanger 9 OS=Homo sapiens GN=SLC... [more]
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