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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049425 ID=TCONS_00049425|Name=TCONS_00049425|organism=Clytia hemisphaerica|type=transcript|length=673bp
GTAAGCTACAACGCTTTTGATGGAGCCACtgaaaatcaaaatttaaaatg
tcagGATTATTTCTTGGAAATCATGGTGGTCGTGCACATTGTTACCGATT
TTTTGAAGACATGATGTTGTGTGTCAAAGAGGAAGGGATCCATAGACAGA
TATTCAAATGTAGGGAGCCAAAAGATGACTATTATGAGTGTGTATTGCAC
AAGAAAAAGATTGGGAAGTACAATGCAATTAAAGAACAAAAGGCCAAATT
AATCAAGGAAGGTAAATGGCCACCAAAGGACAATTGAGAGTTGAGCATTT
ATTGTAATTTTAATAAAGTTTGTCTTAAAAGAATGCCattattttatcaa
atgaaTTTGACTTATGTCATGTCCAGTACTCATCCCGGAAACCAGGCAAT
AAATGCTGAAtcctttctttttataaatcttATAACTGTAATGGTACGGT
GGTAACAAAGTAAACTAATTTTAGTGATATCtgccttaagtggataaatt
ttggcgtggattaatttggcgaatgaccaaaatgcgatttttggcgggga
tttaatttggcgaatgctcaatattgtaaaaattggcggggatttaattt
ggtgggTGGGAAGGTTTTAGTCTCTGGTAAACTAAAAAATACGTGGGATT
TGACTAAGAAATGCTTATTCTCC Run BLAST on NCBI transcript from alignment at scaffold_159:47454..50549+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049425 ID=TCONS_00049425|Name=TCONS_00049425|organism=Clytia hemisphaerica|type=transcript|length=3096bp|location=Sequence derived from alignment at scaffold_159:47454..50549+ (Clytia hemisphaerica)
GTAAGCTACAACGCTTTTGATGGAGCCACGTAAGTACGTCGCTTGTTTCT
ACCGTGTCCCGAACAAAATGGTGGAAAATGTCCTAAAAATTTTAGTGGAT
ACACAACAGATGTTTTACTATGGCgatttgaagatttttatgTAGTCACA
ATTTAATCTTTTCTATCAAGTCATCAATAATTATTATCCTCTATATTTTG
CTGTCATTTGTTTCAATATAAATTAAAATGGACTTTctgacttttctttt
tttttaaagtgaaaatcaaaatttaaaatgtcagGATTATTTCTTGGAAA
TCATGGTGGTCGTGCACATTGTTACCGATTTTTTGAAGACATGATGTTGT
GTGTCAAAGAGGAAGGGATCCATAGACAGATATTCAAATGTAGGGAGCCA
AAAGATGACTATTATGAGTGTGTATTGCACAAGAAAAAGGTATCACTAAT
CTGATTCACGCACCATGATTCAAGAAATGTCAGACacagaatgttttcaa
tgctATATAGCAAACTTTTGTTTAAATTTGTTCCAAAAGCTCCccagaat
agaccttttttcaaagaggccaccctgttgaataattatgtagtccagca
ggaAAACAATGcaataaaaccatgcataattattacaataatatgcatga
tacagtgaTTATGCATGACTCTATcgttgtttttatggctggactacata
attattcaacaggacgtcctctttgaaaaaaggtctatttaaaaCAGCTA
AATTGAAATTATGATCAGTGGCACAGTGTGAAATAATAAcagaaaatttg
attggctcTGTTTTCAACTGCTGTTTAGACCTGggaaaatagaccttttg
ctagacGTGATGTTATGTtggataattaaaaactccagctctaAAACAAT
GACACATTCAATGAcactggtccttaaaatacaaagttaaatcaaaacaa
aaatggtagtgtatagctgcgagcagagctgcatagttcatttgttttga
aattttgctgctttgattggtctgtcatttgagggctatgcatgttagcc
tacactgatgcaagttacccgacttcacggtacttcagcagaattttttt
taatgataacgTCATCTTATTGTTTTCTCCTTTACAACACAGCAAGTGAT
CTAgggacaaaataatttttcctgtTTGTACTGGATGAGGGAAAGAAATG
TATGTGgaataatttgttattcaatagatcATCCTGTTCTCCTAAATGAC
TACACATGgttctatataagaacataaggctttgatggccaaaatgttaa
gaacaagttaagaaagaacatttttttttaaggctttgcactGCTTTGCA
GACTCTGACTCAGACatctgatttcttaggaaaatgaaaaattaaatgct
caaaaaatgatgaaaataagaacatgttaagaacatttttaggcttgtaa
aactaaaaaagttaagaacatccatagGCTTCAAATattctggatgttct
tattaaaaaaacgtgtattctttaCCATCAGTAGAAATCATAGCATGATC
TCCAAGTTATAGCATAGTGGGCagcacccctccaacccccacctgaataa
agtcacccccacctgcatagggtaacccccacctgaaaaatgctaCCGAC
CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCTACTTCACAAGGAT
CTGATAGTCGTTTAGGAGAATGTGACAATCTATTGAATAATAACATTACT
TAGCCAGTACAAACgaaataaattatcttgtccctAGGTAACTgctgtta
aaaaaaaatcaattatatgacattatcattaaaaaaatttatgctggagt
aattagttattaacAGTTAGGGGAAGTGGTTCAATttttaaactgatttt
tgaaaacatgaaccAAAATTTATTCTTGttattttttgatgatgtaATCC
TTTTGAAGCAAGAAAGTTTGACCATGCTGATTCAACAAATGAAATGACAA
CCAAAGACAATCCTTTTAACAGGATAGACCTACCATGATGCATCCTGTTT
TCATGGACCAaccaaaactatggtcaaactTTGAAATATAGTTTAGAAGC
GTTTTATAAAGGTTTGCTTGTGAAAGTACATGACAATCCATGGGAGAAGT
CTTGAGATATTTGTAtgacaaacattttcttttgtcttttttatagattt
cttttttttgtgtCTGATAAAACCTGATTTTGATAAGATAAAGAATTCAA
CTACTCCCACTAACTGATTAAAAAGACTGTTGCGTTATCTCAAGCGACTA
TTGCGTGAatataaaaacacacaaaattcAATCAAACCGCCTAATTGATC
GCGACACAAAACGGATTGCAAGCTTTATGTTCATTCCAATAACAGGAAAA
ATACACGATCTTGGCATGAAAGCAAGGGAACCAACCAAATTGGTTTGGAT
AGTTCCATCCAGCAAAAATAGCATAAAACCTTGGTCATGCCATCGCGTAA
ACCGCTCAGGGCCTCCTAGATATCTTTCGATGCTATACTGTAGATGTGTA
TGTTATGTATAGCAATGTTATTTCTCTTACAGATTGGGAAGTACAATGCA
ATTAAAGAACAAAAGGCCAAATTAATCAAGGAAGGTAAATGGCCACCAAA
GGACAATTGAGAGTTGAGCATTTATTGTAATTTTAATAAAGTTTGTCTTA
AAAGAATGCCattattttatcaaatgaaTTTGACTTATGTCATGTCCAGT
ACTCATCCCGGAAACCAGGCAATAAATGCTGAAtcctttctttttataaa
tcttATAACTGTAATGGTACGGTGGTAACAAAGTAAACTAATTTTAGTGA
TATCtgccttaagtggataaattttggcgtggattaatttggcgaatgac
caaaatgcgatttttggcggggatttaatttggcgaatgctcaatattgt
aaaaattggcggggatttaatttggtgggTGGGAAGGTTTTAGTCTCTGG
TAAACTAAAAAATACGTGGGATTTGACTAAGAAATGCTTATTCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049425-exon-scaffold_159-1491911889:47454..47482 | TCONS_00049425-exon-scaffold_159-1491911889:47454..47482 | Clytia hemisphaerica | exon |
| TCONS_00049425-exon-scaffold_159-1510915933:47454..47482 | TCONS_00049425-exon-scaffold_159-1510915933:47454..47482 | Clytia hemisphaerica | exon |
| TCONS_00049425-exon-scaffold_159-1575043694:47454..47482 | TCONS_00049425-exon-scaffold_159-1575043694:47454..47482 | Clytia hemisphaerica | exon |
| TCONS_00049425-exon-scaffold_159-1491911889:47713..47892 | TCONS_00049425-exon-scaffold_159-1491911889:47713..47892 | Clytia hemisphaerica | exon |
| TCONS_00049425-exon-scaffold_159-1510915933:47713..47892 | TCONS_00049425-exon-scaffold_159-1510915933:47713..47892 | Clytia hemisphaerica | exon |
| TCONS_00049425-exon-scaffold_159-1575043694:47713..47892 | TCONS_00049425-exon-scaffold_159-1575043694:47713..47892 | Clytia hemisphaerica | exon |
| TCONS_00049425-exon-scaffold_159-1491911889:50086..50549 | TCONS_00049425-exon-scaffold_159-1491911889:50086..50549 | Clytia hemisphaerica | exon |
| TCONS_00049425-exon-scaffold_159-1510915933:50086..50549 | TCONS_00049425-exon-scaffold_159-1510915933:50086..50549 | Clytia hemisphaerica | exon |
| TCONS_00049425-exon-scaffold_159-1575043694:50086..50549 | TCONS_00049425-exon-scaffold_159-1575043694:50086..50549 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_159 | supercontig | scaffold_159:47454..50549 + |
Blast
The following BLAST results are available for this feature:
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