TCONS_00049428 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049428
Unique NameTCONS_00049428
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2082

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049428 ID=TCONS_00049428|Name=TCONS_00049428|organism=Clytia hemisphaerica|type=transcript|length=2082bp
TGAAAAGCCAAACAAAACTTGTTATTaaaataaagttgtaaaatgaTCAA
TCGTATTAGTGGATTTATTGACAAACATTTGCAGCTCATCAGGGGAATGA
CAGTAGCGACGGGATGCATAGGAATCATACTGATAACTCGAAGATGAAAA
GATACAGACATGTTTCTGAAATACCCAAAGAATTCATCACCAAGAAGGTA
TTTTTACGCGGAAAGTTGGAGAGAATTGAAGTCTGTGGAACATTATTGAT
TCAGCACTCCCCTATTCTCTCATTTGGCTTTTCCAAAGGAAGTCCTTCAT
TGCGTTTTTCGTTAGCTGGTGTTGAACTGCAAAATGGGTGGTACGAACAT
TTACAGGAGCTCCAACACAAAAATATCCTTTTCcaaattttgcagaaaaa
tgATAAAGAGCTGAAAGgagttttattttataaaagaGGTTGGCTATCGA
AAGAAATGAATGTGAATGAAGATTTGGTTGGAAGAGGGCTCGCAATAACA
CGATGTAACATTCCTTCACCACTAAATGTGTTCTTATACCAAGAGTTGAT
GGAGAGGTTACTCAAAGTCGAACTTCAAGCCGATAAGAAGGGAATCGGGA
TCTGGAGACGAGAAAGGGAGGAGACTTTCATTAAAAGATTGATTGGTTGG
GTGAAAAGAAAGTTGCAAAAATGAGGAGCTCTATAAATATCAAACCAAGA
TTTGTTGGGTCCATCATTGCGAAAGATTTAAAAGTGAAAGAAGGACGTAT
TTCATTCCTGTCTGCATCCAGATGCAATTACTGCAAACCAACACCCACTC
TCAACAACATCATCAACAACACTTTCCTCAACAACAAATGATGGACAACA
ATCTCGTCATCAACAGCGAACACCAAATGCTTATCGGTAAcgagtttttc
caaaaatattctccCATGGCAACCTACACAAACAATAACATTCAACTACA
ACCCAGAATGCATCATTTACCGCTTCAACATCAACCCATACATCCGCGAC
CGCGAAGGCGCCGCTCCAACCACAGCTTAGTTGCCACCATGGATCCTGAA
GCGGTCGCTCGTCGAAATGAACGCGAACGGAACCGCGTAAAACAAGTGAA
CGATGGATTTGATGCTTTGCGTAAGAAAGTTCCCTTTTTGCCCAATAAAA
AGAAACTCTCAAAAGTGGACATTCTCCGATGTGCCATGATGTATATTCGT
GATTTGAAAGGCGTGGTCGAAGAGTACGACCATAATAACACGCACTATCT
TACACATGCTCTCGGTATTAAAACCAGACCAAACGGGAGTTTTAGTAGTT
CAAGTAGCTCATCTAGTGACGATTTGATTCTTTTGGAACAGGACTTGGAA
GATGATTTACTGGGGCACTGATCCCAtattcatttgaaaattagtttttt
ctatttttgtcgGCTTTAAGCCCAATCTATTTTCACGTGCTGAACGATGT
TTAGTttgtattaaaaagaaattgtaaaTATGGAGCtgtatatatatttt
atttatagaattcaaaataaacaaagaataCGCAATGAATANCCATGGAT
CCTGAAGCGGTCGCGCGTCGAAATGAACGCGAACGGAACCGCGTAAAACA
AGTGAACGATGGATTTGATGCTTTGCGTAAGAAAGTTCCCTTTTTGCCCA
ATAAAAAGAAACTCTCAAAAGTGGACATTCTCCGATGTGCCATGATGTAT
ATTCGTGATTTGAAAGGCGTGGTCGAAGAGTACGACCATAATAACACGCA
CTATCTTACACATGCTCTCGGTATTAAAACCAGACCAAACGGGAGTTTTA
GTAGTTCAAGTAGCTCATCTAGTGACGATTTGATTCTTTTGGAACAGGAC
TTGGAAGATGATTTACTGGGGCACTGATCCCAtattcatttgaaaattag
ttttttctatttttgtcgGCTTTAAGCCCAATCTATTTTCACGTGCTGAA
CGATGTTTAGTttgtattaaaaagaaattgtaaaTATGGAGCtgtatata
tattttatttatagaattcaaaataaacaaagaataCGCAATGAATATTC
TTTCGTCCTCACTTCAAAAGGGCACATCTTAT
Run BLAST on NCBI

transcript from alignment at scaffold_159:71195..76530+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049428 ID=TCONS_00049428|Name=TCONS_00049428|organism=Clytia hemisphaerica|type=transcript|length=5336bp|location=Sequence derived from alignment at scaffold_159:71195..76530+ (Clytia hemisphaerica)
TGAAAAGCCAAACAAAACTTGTTATTaaaataaagttgtaaaatgaTCAA
TCGTATTAGTGGATTTATTGACAAACATTTGCAGCTCATCAGGGtacaaa
tattttcaattttcacgttTACCTAATTCCTGATGGACCTAGATGGACTT
CAATGGTAATTCTATGACTGATATAGGTTAAAATCATACCGAAGTGGGCA
ATGAATTTAAATAATCTCAATCTAAGTTCTGTTTGAATTACATACTGTTt
agatatttcatatttttcgaTTTCTGTTGTTTCTGTACAAGATTGTTTTC
AGTCTCGTATTGTATAATCATTTGTACTTTGTAACAGAGAATGTTCTGTA
TAATGTCTCTATCATATATTCTTTGTAGGGAATGACAGTAGCGACGGGAT
GCATAGGAATCATACTGATAACTCGAAGGTACCATTTGGTATGtaccaaa
attttgattgttttaccATTTCATACCTAAAAAGCAGAATGCTTTTCCTA
TTAATATCATGATCACGTTATTTCCATTGCACTTTTATTTCACCATTATT
TGTTTATTCACTTGATTCAGATGAAAAGATACAGACATGTTTCTGAAATA
CCCAAAGAATTCATCACCAAGAAGGTATTTTTACGCGGAAAGTTGGAGAG
AATTGAAGTCTGTGGAACATTATTGATTCAGCACTCCCCTATTCTCTCAT
TTGGCTTTTCCAAAGGTTTGACAATTTCATTCTTCATAGTGCGGACAGGG
GCctgatccccccttcttaaatgatcccgtcccttcttggcatcccccaa
cctttaaaaataccTNAAGGGGCctgacccccccccttcttaaatgatcc
cgtcccttcttggcatccccccaaggacaaaaatagctaacaaatatatg
tgaaatCTCTTTAGATAGTAAAAGCGAAATAATAcacttcttctttttga
ctcagactactctaacagaaaacttcctttcattgagaccaaatttcata
acagtgcttgaaaataatctacaatatatatgtaagcccccttCTTAAAC
TGTCCCCTtccctttttcatgaaaattccTGACCCCCCCCTTCTTTATTT
TTTCGGAAGGTGTCATCTCCCCCctccccttaagaaaggggggggggatg
aAACAAACTATGATTCTTTCGAATtttcatagcgtcagcctgagtttagg
tcccaggcaaaaataaGGGCCCCCTGAAatttaagtccccccaaagattt
atgaattttttgttagcccccaggacttttgaccctagacacttccaaaa
aattgatccagtaaaaaagggttttccaatgtaaatGGAGTTCAGTTGTA
Agttttttaagataaaatattttgcacactttttcaaaaatttttcagat
tcatgagcttcaatttgggtatttgaagccaactattaagctgaattatt
ttagcccccgcgttaagtgatgagattttagctccccccaattACACAGG
tcccccaaaaaagtggtgtacttccagccccctccttttttggggaaaaa
tgtagggtgtaacccccccccAACTAGCAAGGGGGGATGACGCTATGATT
TTGCTATGATATTTTGTAGTATTTTACATTAGGAGAAGTATTCCGAACGA
AATTGAAGTTGGATTAAcagtttttctctttatttgGATTGTTTAGGAAG
TCCTTCATTGCGTTTTTCGTTAGCTGGTGTTGAACTGCAAAATGGGTGGT
ACGAACATTTACAGGAGCTCCAACACAAAAATATCCTTTTCcaaattttg
cagaaaaatgATAAAGAGCTGAAAGgagttttattttataaaagagTAAG
TGAATAAATAAAGGTTGTTTAGGGAGACCCTGCCATGTCaaataaatatt
taatttctgcGACTTTTGCTAGAAATTCTTTTTAtttcgattaaaaaaaa
cccAGGGACTAAAATAGCTAAAACCCTTTATCGTTTAGCTcattttttta
agattcaaTCATTTATTCacaatttttgacttttaaatccAGTTGGAATT
GTTTAGTCTGGAAAACTGCCTTAGGTTTCTTCTTATTCAATGAAATTATT
CGATAGCAGACCCTTTGACCCTTTTTCTCACATTTCGCCAATTGGTGTCC
TAAAATATCCTATATTatatttcgaaaattgaaaataaacggATCTACAT
GAAGGAAATGCCATGAAGGCTACGTGAGGACATTTGAGTGAAGACTAAAA
AAAGCCCCTAAGTATCACAGATGTATTTTATTGTTATGtttaatacctta
agggaaataATTATGGTTAACTTTTCGAAATTAAAGTTCTCGCAAAAATT
AACTTTATTTGTAATATTGGAAATTTAAAGTTATTCGctcaaattctttt
tcaacaatTCCTGCCcctcgctaaaattagttcttCCCGAGCAAAATGAC
TAAACTTCaaactgaaactttttttgacttCAGGGTTGGCTATCGAAAGA
AATGAATGTGAATGAAGATTTGGTTGGAAGAGGGCTCGCAATAACACGAT
GTAACATTCCTTCACCACTAAATGTGTTCTTATACCAAGAGTTGATGGAG
AGGTTACTCAAAGTCGAACTTCAAGCCGATAAGAAGGGAATCGGGATCTG
GAGACGAGAAAGGGAGGAGACTTTCATTAAAAGATTGATTGGTTGGGTGA
AAAGAAAGTTGCAAAAATGAGGAGGTAAATGTTCAATTCTTTTGATAATT
GTCTTGACGGtgcttcttcttttgtttttctaatcATGCTCAATGTGATA
ACAAGAAGTATATTGTTCGACTTGAAGTTGTTTGCTATTTTATATGTGGG
AAGTTGAGTTAGGCTACTGCTATCCCCGAAATTCTTTCAAACATCATTTT
ACGTATATATGTTAGACTTAGTGCTTTAAACccctttcatttttcaaaga
aatttcctTAGTGTTTTTACACTTTCACAGCTCAACAAAAAAGGATAACT
ATTTCTAGACATCATTCAGCATGCTTCAATGAATAGCGAGCTTCTGTGAA
TTGAATGAAGCTTTTCATTCTCTTTCAATAGACGCATCTATTTTTGACTT
TGCTTTGCTCATGCGCactgaaaaataattcaaaggaTCAGCTAGAAGTA
TCTCGTGAGCAACATTATTTGCTTTTTTGCATGCGTGAAAATTTTGCAAT
TGACTTGTGAGGAGGTTTTCCGAAAGCGTTTAAAAGGACTTTGATGGTGG
tgaaagaagaactttaaatccttctcaaagaAAACAAACTTCTTAAAGTT
TGAAGAGGTCCTTTTAATTATTTCAATATTTCCATTGAGCTGTTGTTTTT
AGATCTTCTTTTTGTACTAGTTTCACTTTTATTGAGCTCTTTATTGAATA
GGTTGATAAGGCTTTTTATGGGAAAATCTTTGCCCTCTTGCTGATCTTTA
AAAATCTGTAAGGTTATTGCAATGTTTAATGAAAGAAAAGGATTCTTTTT
CACTTtgctttgttttgttgtttcttcgCGGCGAAAGGATAAAACggatt
ttcctttttctttcacttttgttgAGATGATgggaaaatatcattttcat
tgCAATTTAATTTTATCACCTTCTTGCTCaacttttattaatttcaaata
aagaatttgtttaaaaataatcttttcaaaataaacGGCTCGTGTCAAAA
AGACGGGggttaacttttatcaaattaaatCGAATCCATTCCGACCGCTG
ACAAACTACCTCTCAAACAAAAGCTATATCAAAAGAATATTTGAGTtgga
aattaaattttcatcaatttgaGTCTCGGAAAATTCGTTGGGATCGTGGC
AAAATGTCCCCCCTGTATTAGTGTAAAGTTAGTTCCCTGTGAAGTAATGA
AATTAGTATCGAACCTTCTTCTTCCTCCCTAGCTCTATAAATATCAAACC
AAGATTTGTTGGGTCCATCATTGCGAAAGATTTAAAAGTGAAAGAAGGAC
GTATTTCATTCCTGTCTGCATCCAGATGCAATTACTGCAAACCAACACCC
ACTCTCAACAACATCATCAACAACACTTTCCTCAACAACAAATGATGGAC
AACAATCTCGTCATCAACAGCGAACACCAAATGCTTATCGGTAAcgagtt
tttccaaaaatattctccCATGGCAACCTACACAAACAATAACATTCAAC
TACAACCCAGAATGCATCATTTACCGCTTCAACATCAACCCATACATCCG
CGACCGCGAAGGCGCCGCTCCAACCACAGCTTAGTTGCCACCATGGATCC
TGAAGCGGTCGCTCGTCGAAATGAACGCGAACGGAACCGCGTAAAACAAG
TGAACGATGGATTTGATGCTTTGCGTAAGAAAGTTCCCTTTTTGCCCAAT
AAAAAGAAACTCTCAAAAGTGGACATTCTCCGATGTGCCATGATGTATAT
TCGTGATTTGAAAGGCGTGGTCGAAGAGTACGACCATAATAACACGCACT
ATCTTACACATGCTCTCGGTATTAAAACCAGACCAAACGGGAGTTTTAGT
AGTTCAAGTAGCTCATCTAGTGACGATTTGATTCTTTTGGAACAGGACTT
GGAAGATGATTTACTGGGGCACTGATCCCAtattcatttgaaaattagtt
ttttctatttttgtcgGCTTTAAGCCCAATCTATTTTCACGTGCTGAACG
ATGTTTAGTttgtattaaaaagaaattgtaaaTATGGAGCtgtatatata
ttttatttatagaattcaaaataaacaaagaataCGCAATGAATANCCAT
GGATCCTGAAGCGGTCGCGCGTCGAAATGAACGCGAACGGAACCGCGTAA
AACAAGTGAACGATGGATTTGATGCTTTGCGTAAGAAAGTTCCCTTTTTG
CCCAATAAAAAGAAACTCTCAAAAGTGGACATTCTCCGATGTGCCATGAT
GTATATTCGTGATTTGAAAGGCGTGGTCGAAGAGTACGACCATAATAACA
CGCACTATCTTACACATGCTCTCGGTATTAAAACCAGACCAAACGGGAGT
TTTAGTAGTTCAAGTAGCTCATCTAGTGACGATTTGATTCTTTTGGAACA
GGACTTGGAAGATGATTTACTGGGGCACTGATCCCAtattcatttgaaaa
ttagttttttctatttttgtcgGCTTTAAGCCCAATCTATTTTCACGTGC
TGAACGATGTTTAGTttgtattaaaaagaaattgtaaaTATGGAGCtgta
tatatattttatttatagaattcaaaataaacaaagaataCGCAATGAAT
ATTCTTTCGTCCTCACTTCAAAAGGGCACATCTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031375XLOC_031375Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049428-exon-scaffold_159-1491911889:71195..71287TCONS_00049428-exon-scaffold_159-1491911889:71195..71287Clytia hemisphaericaexon
TCONS_00049428-exon-scaffold_159-1510915933:71195..71287TCONS_00049428-exon-scaffold_159-1510915933:71195..71287Clytia hemisphaericaexon
TCONS_00049428-exon-scaffold_159-1575043694:71195..71287TCONS_00049428-exon-scaffold_159-1575043694:71195..71287Clytia hemisphaericaexon
TCONS_00049428-exon-scaffold_159-1491911889:71573..71622TCONS_00049428-exon-scaffold_159-1491911889:71573..71622Clytia hemisphaericaexon
TCONS_00049428-exon-scaffold_159-1510915933:71573..71622TCONS_00049428-exon-scaffold_159-1510915933:71573..71622Clytia hemisphaericaexon
TCONS_00049428-exon-scaffold_159-1575043694:71573..71622TCONS_00049428-exon-scaffold_159-1575043694:71573..71622Clytia hemisphaericaexon
TCONS_00049428-exon-scaffold_159-1491911889:71765..71909TCONS_00049428-exon-scaffold_159-1491911889:71765..71909Clytia hemisphaericaexon
TCONS_00049428-exon-scaffold_159-1510915933:71765..71909TCONS_00049428-exon-scaffold_159-1510915933:71765..71909Clytia hemisphaericaexon
TCONS_00049428-exon-scaffold_159-1575043694:71765..71909TCONS_00049428-exon-scaffold_159-1575043694:71765..71909Clytia hemisphaericaexon
TCONS_00049428-exon-scaffold_159-1491911889:72891..73039TCONS_00049428-exon-scaffold_159-1491911889:72891..73039Clytia hemisphaericaexon
TCONS_00049428-exon-scaffold_159-1510915933:72891..73039TCONS_00049428-exon-scaffold_159-1510915933:72891..73039Clytia hemisphaericaexon
TCONS_00049428-exon-scaffold_159-1575043694:72891..73039TCONS_00049428-exon-scaffold_159-1575043694:72891..73039Clytia hemisphaericaexon
TCONS_00049428-exon-scaffold_159-1491911889:73678..73918TCONS_00049428-exon-scaffold_159-1491911889:73678..73918Clytia hemisphaericaexon
TCONS_00049428-exon-scaffold_159-1510915933:73678..73918TCONS_00049428-exon-scaffold_159-1510915933:73678..73918Clytia hemisphaericaexon
TCONS_00049428-exon-scaffold_159-1575043694:73678..73918TCONS_00049428-exon-scaffold_159-1575043694:73678..73918Clytia hemisphaericaexon
TCONS_00049428-exon-scaffold_159-1491911889:75127..76530TCONS_00049428-exon-scaffold_159-1491911889:75127..76530Clytia hemisphaericaexon
TCONS_00049428-exon-scaffold_159-1510915933:75127..76530TCONS_00049428-exon-scaffold_159-1510915933:75127..76530Clytia hemisphaericaexon
TCONS_00049428-exon-scaffold_159-1575043694:75127..76530TCONS_00049428-exon-scaffold_159-1575043694:75127..76530Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_159supercontigscaffold_159:71195..76530 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.90856	3.20922	2.18109	1.55316	2.47243	3.15758	3.08147	5.78057	4.30558	3.8807	5.54557	3.64146	6.75366	7.71419	5.4428	6.2454	7.11144	7.55782	2.5629	13.4545	7.61847	7.06742	8.41553	7.3362	6.52283	6.76197	4.18201	3.53996	4.87269	3.88283
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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