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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049435 ID=TCONS_00049435|Name=TCONS_00049435|organism=Clytia hemisphaerica|type=transcript|length=523bp ATGACATTGCTTGAATCAACAACAGAAGAGGGCTCGTGTACTGCAGTCCT TTATTTGCTCAGTTTGGTTATAAAAAAAGTTCCAACAACTGTTTTGAGAA CAAAGTGTGCTGAAAGTCTAAAATGTTTCACTGTGATCATGGAAGCGCAT CATGAAAATGGAAGAGCATCTTTATTGATGGGActgCTTGATTGCCTAGC TACAACATTGAATGCACAAGATCCTGCCATTTGGACTGAACATTCAACAC AGAGAAGCTTTCAGATGATGCTTATGTTCATCATTCACTCAAAACCAAAG gtTCGAAAAGTTGCTCACAACTCAATACAGTCTATTTTAAAGCTGGGACT ATTAAATCATAAGAATCATCCATCTGGTAGTCTTACAGCAAAACACTTAA TCCAAATATTTCAACAAAATTCTTCAGatacTGCCACTATGTGTCACCAC AGTTTaaactttctcaaaaattgCTTACATTATTTTGGAGAAAAGCAACT AAAGGAACTTTGTGAAGCCATCC Run BLAST on NCBI protein sequence of TCONS_00049435-protein >TCONS_00049435-protein ID=TCONS_00049435-protein|Name=TCONS_00049435-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
MTLLESTTEEGSCTAVLYLLSLVIKKVPTTVLRTKCAESLKCFTVIMEAH HENGRASLLMGLLDCLATTLNAQDPAIWTEHSTQRSFQMMLMFIIHSKPK VRKVAHNSIQSILKLGLLNHKNHPSGSLTAKHLIQIFQQNSSDTATMCHH SLNFLKNCLHYFGEKQLKELCEAI Run BLAST on NCBI transcript from alignment at scaffold_159:21850..25618- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049435 ID=TCONS_00049435|Name=TCONS_00049435|organism=Clytia hemisphaerica|type=transcript|length=3769bp|location=Sequence derived from alignment at scaffold_159:21850..25618- (Clytia hemisphaerica) ATGACATTGCTTGAATCAACAACAGAAGAGGGCTCGTGTACTGCAGTCCT
TTATTTGCTCAGTTTGGTTATAAAAAAGTAAGTTAAAAATCATTCAAGCT
TGTCACTAACACTATTTCCTATCTGCCTGTTAAAAGAAAGTCACATAGTG
TGTAGTAGAGTAAAGGCCCTATCTCTCCCTTTCTAAATCTGCCTACCATT
CATGACTTACTTCCCCTTACACAAGACTTACCTATCTATGAGAAAACTGC
TAGTTTCGGTTTTCTTTGATAATACAGAATGTACAATGTAGGCCTAAATT
ATATGTTAAAATCTAATTATTCCACATATTTTTAACTTAAAGTTTCTTAT
TATGAAAGTTGGTCAGAAGAAATGAAAGGGGTAGGGTTGCAAAATGAAGT
CTGAAGCTCAGTTGGAATTTACCAAAAACGATGATCGTACAATACCATAA
CTTTTTCTTTTATGCGTGAATATTCTTTAGAGTTCCAACAACTGTTTTGA
GAACAAAGTGTGCTGAAAGTCTAAAATGTTTCACTGTGATCATGGAAGCG
CATCATGAAAATGGAAGAGCATCTTTATTGATGGGAGTAAGTAAACAAAT
ATTTTGCATAATGAATGCTTCAACATCCTTTAAGCTTAGCTTTTAGATTT
TCATACTACAAAAAAGATACCCTTCATTTTTAACCCTTTCCAGACGCACG
GGCCACTGTGGGTGGCCCATAGCTTTGTAAAAGATTTAACAGTTTTCGCA
CCAAAATACGATAACATGGTTTTGAATGATGATTTTGAGATAAATTTCCC
GTAACCTGCAAAAAACCGCTTTTCGATATCTTGTTTACAACTAGAATTAT
AAATGTTTATAATGTTTGTTGTAAATTTACTCAGGCTAAATCTGTAAGGG
AAAAATTGCTCAAAAATTTGGACAAAAATTCACTTTACTCAGGGGGCCAT
TCAAAAAGTACGTTCGTCCAAATTTCCCTATTTTCAGACCCCCCTCCCCC
CTTGTTCGTCAGCGTTCGTTTTGAAGTACCCCCCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCAAAT
TTCCCTATTTTCAGACCCCCCCCCCCCCTTGTTCGTCAGCGTTCGTTTTG
AAGTTCCCCCCCCCCCTTTGTACGTTCGTTTTTATCTCAAAATTTTTACC
CCCCCCCCGAAATGTTTCAAAAAAAATTACTTTTTCCTTTGAAGATAATT
GGAGAATTTAGACAAGGCAAGTTCAAAGAATAGGATTTTAGCCTTTCTTT
AATCTTATCGCACCTTAAGTTTTTGCTCTCTAATTATCTAATAATTGCTA
AACAATTATAATATACACAATTGTTTAGGAGATTAACAATTATCTTCGGT
TATCAATTCAAAGAAAAAAAATTATTAGGAGATAGATAGAAAAAGATTTT
TCATAGACTAAGTTAAAAGTCACGCTTGTGACAAGCATCCCCCCCCGCAA
AAGCAAACGTACACAGATCGACTTGGGGGGTCTCATAGTTCGCACCCCCC
CTTTATAAAGGGGGGGGGTAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGTGGCAGTTCTGTACAAAGATAATGGACTAAACGGTGGCACTTCC
TGCATTGTAGGGTATCTTTTAGTGCGTTTTCTTCATTTATGATGCAGTTT
GACGGGCTGCAAAAGTCGTTTATTGATGGTGATTTTTGATTATTTTCTTG
GATTTTTTCCGCCATCTTTGTGCATTTTTTCAGACGACAACCGTTCAGTT
TTGTATTTGACGTCAACTCATTCAAGCCCTTTAGGCAAAAAAAAAGTAGT
CTTGTTTCCGGAAATGCAGGTGACAAAAAAATAAACCCACCACGTCTTTG
CTGTAGTATATTATTTACTCTGTTACAAAACTTTTGTGTTTTCTTGAGAA
AACGTTTTGCTTTTTGAGCCTAGTTGTCTGAAATATTCAGTTAAAAAAAA
AAAATTCTGACAGCACAAAAAAAAATTATTTTTTGCGGCCGGGCGACTTT
CAAAAATAAGTTTTTTTTGGCCTTAGAACTATGGTCAAGAATTTAATTAC
ATAAAAATAATCTTCCAAAACAGTTGCTTATTAATAGCTGGTTAGGTTAT
CAGGTTTGGTAACAGCTAATGAAAATGAAGGTTTTTTGCATTCTGAGCTT
TCCATCTTTTTCCATTTTTTCATCTCTGAACTGTTTTTTTTTTTTAGCTG
CTTGATTGCCTAGCTACAACATTGAATGCACAAGATCCTGCCATTTGGAC
TGAACATTCAACACAGAGAAGCTTTCAGATGATGCTTATGTTCATCATTC
ACTCAAAACCAAAGGTTTGTTGGACCTGCTACCAGAGGTCCTGTTTCTGA
GTTGTCTTATAAGTAAGATATGATAGCTTTTCCTTTCTTTAATATGTTTT
GTTTTTCGTACATCTATCTTGACAGGGCTCCAATACTAATCAAAATCATA
TTTCTAGCCAATAAAATAAATAAATAATCTGATGAATGACAAATGAGAGA
AATATTTTATTATTTTAGGTTCGAAAAGTTGCTCACAACTCAATACAGTC
TATTTTAAAGCTGGGACTATTAAATCATAAGAATCATCCATCTGGTAGTC
TTACAGCAAAACACTTAATCCAAATATTTCAACAAAATTCTTCAGGTTTG
TGTTTGAAAGTTCTCAGCTGTTCTTGTATATCATATAACAAATAAAACTT
GATACATAGTTTAGTTTACATTCCTGGTTTCTTCAAACTCCCCTGTATAA
TCAATCCCCCTATATTAAAATTTCTCAGAGACCCCCCTTAATAACAGAGG
TCCTGACGGGAATGGTATCAAAACATAGCATGCTAAAGAATCAAAAACAC
AAACCCTAATAATTGAAACTTTTAAACACCCCCCTTTATAGGGTTGTCTG
AGAATTTGAAGAACCCCCCCCCCAACATAAGGGGTTGAAACTATGTTATA
ATGATATTATATTCATGAAAGTCTCATATAAAAGTCAGTTTAAATTTACT
TTTGTTTTAGATACTGCCACTATGTGTCACCACAGTTTAAACTTTCTCAA
AAATTGCTTACATTATTTTGGAGAAAAGGTAATTAGTTTTGAAGTAAAGA
ATTTTCCTTTTGAATTACATGAAATTATTGTTTCTCTTTGATTTTTTTCA
AGATATGTAGATAAACAATGAATTTTCATCCTTCTTCTTAGCAACTAAAG
GAACTTTGTGAAGCCATCC Coding sequence (CDS) from alignment at scaffold_159:21850..25618- >TCONS_00049435 ID=TCONS_00049435|Name=TCONS_00049435|organism=Clytia hemisphaerica|type=CDS|length=3132bp|location=Sequence derived from alignment at scaffold_159:21850..25618- (Clytia hemisphaerica) CAACTAAAGGAACTTTGTGAAGCCATCATACTGCCACTATGTGTCACCAC AGTTTAAACTTTCTCAAAAATTGCTTACATTATTTTGGAGAAAAGGTTCG AAAAGTTGCTCACAACTCAATACAGTCTATTTTAAAGCTGGGACTATTAA ATCATAAGAATCATCCATCTGGTAGTCTTACAGCAAAACACTTAATCCAA ATATTTCAACAAAATTCTTCAGCTGCTTGATTGCCTAGCTACAACATTGA ATGCACAAGATCCTGCCATTTGGACTGAACATTCAACACAGAGAAGCTTT CAGATGATGCTTATGTTCATCATTCACTCAAAACCAAAGAGTTCCAACAA CTGTTTTGAGAACAAAGTGTGCTGAAAGTCTAAAATGTTTCACTGTGATC ATGGAAGCGCATCATGAAAATGGAAGAGCATCTTTATTGATGGGAATGAC ATTGCTTGAATCAACAACAGAAGAGGGCTCGTGTACTGCAGTCCTTTATT TGCTCAGTTTGGTTATAAAAAACAACTAAAGGAACTTTGTGAAGCCATCA TACTGCCACTATGTGTCACCACAGTTTAAACTTTCTCAAAAATTGCTTAC ATTATTTTGGAGAAAAGGTTCGAAAAGTTGCTCACAACTCAATACAGTCT ATTTTAAAGCTGGGACTATTAAATCATAAGAATCATCCATCTGGTAGTCT TACAGCAAAACACTTAATCCAAATATTTCAACAAAATTCTTCAGCTGCTT GATTGCCTAGCTACAACATTGAATGCACAAGATCCTGCCATTTGGACTGA ACATTCAACACAGAGAAGCTTTCAGATGATGCTTATGTTCATCATTCACT CAAAACCAAAGAGTTCCAACAACTGTTTTGAGAACAAAGTGTGCTGAAAG TCTAAAATGTTTCACTGTGATCATGGAAGCGCATCATGAAAATGGAAGAG CATCTTTATTGATGGGAATGACATTGCTTGAATCAACAACAGAAGAGGGC TCGTGTACTGCAGTCCTTTATTTGCTCAGTTTGGTTATAAAAAACAACTA AAGGAACTTTGTGAAGCCATCATACTGCCACTATGTGTCACCACAGTTTA AACTTTCTCAAAAATTGCTTACATTATTTTGGAGAAAAGGTTCGAAAAGT TGCTCACAACTCAATACAGTCTATTTTAAAGCTGGGACTATTAAATCATA AGAATCATCCATCTGGTAGTCTTACAGCAAAACACTTAATCCAAATATTT CAACAAAATTCTTCAGCTGCTTGATTGCCTAGCTACAACATTGAATGCAC AAGATCCTGCCATTTGGACTGAACATTCAACACAGAGAAGCTTTCAGATG ATGCTTATGTTCATCATTCACTCAAAACCAAAGAGTTCCAACAACTGTTT TGAGAACAAAGTGTGCTGAAAGTCTAAAATGTTTCACTGTGATCATGGAA GCGCATCATGAAAATGGAAGAGCATCTTTATTGATGGGAATGACATTGCT TGAATCAACAACAGAAGAGGGCTCGTGTACTGCAGTCCTTTATTTGCTCA GTTTGGTTATAAAAAACAACTAAAGGAACTTTGTGAAGCCATCATACTGC CACTATGTGTCACCACAGTTTAAACTTTCTCAAAAATTGCTTACATTATT TTGGAGAAAAGGTTCGAAAAGTTGCTCACAACTCAATACAGTCTATTTTA AAGCTGGGACTATTAAATCATAAGAATCATCCATCTGGTAGTCTTACAGC AAAACACTTAATCCAAATATTTCAACAAAATTCTTCAGCTGCTTGATTGC CTAGCTACAACATTGAATGCACAAGATCCTGCCATTTGGACTGAACATTC AACACAGAGAAGCTTTCAGATGATGCTTATGTTCATCATTCACTCAAAAC CAAAGAGTTCCAACAACTGTTTTGAGAACAAAGTGTGCTGAAAGTCTAAA ATGTTTCACTGTGATCATGGAAGCGCATCATGAAAATGGAAGAGCATCTT TATTGATGGGAATGACATTGCTTGAATCAACAACAGAAGAGGGCTCGTGT ACTGCAGTCCTTTATTTGCTCAGTTTGGTTATAAAAAACAACTAAAGGAA CTTTGTGAAGCCATCATACTGCCACTATGTGTCACCACAGTTTAAACTTT CTCAAAAATTGCTTACATTATTTTGGAGAAAAGGTTCGAAAAGTTGCTCA CAACTCAATACAGTCTATTTTAAAGCTGGGACTATTAAATCATAAGAATC ATCCATCTGGTAGTCTTACAGCAAAACACTTAATCCAAATATTTCAACAA AATTCTTCAGCTGCTTGATTGCCTAGCTACAACATTGAATGCACAAGATC CTGCCATTTGGACTGAACATTCAACACAGAGAAGCTTTCAGATGATGCTT ATGTTCATCATTCACTCAAAACCAAAGAGTTCCAACAACTGTTTTGAGAA CAAAGTGTGCTGAAAGTCTAAAATGTTTCACTGTGATCATGGAAGCGCAT CATGAAAATGGAAGAGCATCTTTATTGATGGGAATGACATTGCTTGAATC AACAACAGAAGAGGGCTCGTGTACTGCAGTCCTTTATTTGCTCAGTTTGG TTATAAAAAACAACTAAAGGAACTTTGTGAAGCCATCATACTGCCACTAT GTGTCACCACAGTTTAAACTTTCTCAAAAATTGCTTACATTATTTTGGAG AAAAGGTTCGAAAAGTTGCTCACAACTCAATACAGTCTATTTTAAAGCTG GGACTATTAAATCATAAGAATCATCCATCTGGTAGTCTTACAGCAAAACA CTTAATCCAAATATTTCAACAAAATTCTTCAGCTGCTTGATTGCCTAGCT ACAACATTGAATGCACAAGATCCTGCCATTTGGACTGAACATTCAACACA GAGAAGCTTTCAGATGATGCTTATGTTCATCATTCACTCAAAACCAAAGA GTTCCAACAACTGTTTTGAGAACAAAGTGTGCTGAAAGTCTAAAATGTTT CACTGTGATCATGGAAGCGCATCATGAAAATGGAAGAGCATCTTTATTGA TGGGAATGACATTGCTTGAATCAACAACAGAAGAGGGCTCGTGTACTGCA GTCCTTTATTTGCTCAGTTTGGTTATAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00049435-exon-scaffold_159-1575043694:25542..25618 | TCONS_00049435-exon-scaffold_159-1575043694:25542..25618 | Clytia hemisphaerica | exon |
TCONS_00049435-exon-scaffold_159-1575043694:25033..25138 | TCONS_00049435-exon-scaffold_159-1575043694:25033..25138 | Clytia hemisphaerica | exon |
TCONS_00049435-exon-scaffold_159-1575043694:22755..22871 | TCONS_00049435-exon-scaffold_159-1575043694:22755..22871 | Clytia hemisphaerica | exon |
TCONS_00049435-exon-scaffold_159-1575043694:22424..22550 | TCONS_00049435-exon-scaffold_159-1575043694:22424..22550 | Clytia hemisphaerica | exon |
TCONS_00049435-exon-scaffold_159-1575043694:21991..22058 | TCONS_00049435-exon-scaffold_159-1575043694:21991..22058 | Clytia hemisphaerica | exon |
TCONS_00049435-exon-scaffold_159-1575043694:21850..21877 | TCONS_00049435-exon-scaffold_159-1575043694:21850..21877 | Clytia hemisphaerica | exon |
TCONS_00049435-exon-scaffold_159-1510915933:25542..25618 | TCONS_00049435-exon-scaffold_159-1510915933:25542..25618 | Clytia hemisphaerica | exon |
TCONS_00049435-exon-scaffold_159-1510915933:25033..25138 | TCONS_00049435-exon-scaffold_159-1510915933:25033..25138 | Clytia hemisphaerica | exon |
TCONS_00049435-exon-scaffold_159-1510915933:22755..22871 | TCONS_00049435-exon-scaffold_159-1510915933:22755..22871 | Clytia hemisphaerica | exon |
TCONS_00049435-exon-scaffold_159-1510915933:22424..22550 | TCONS_00049435-exon-scaffold_159-1510915933:22424..22550 | Clytia hemisphaerica | exon |
TCONS_00049435-exon-scaffold_159-1510915933:21991..22058 | TCONS_00049435-exon-scaffold_159-1510915933:21991..22058 | Clytia hemisphaerica | exon |
TCONS_00049435-exon-scaffold_159-1510915933:21850..21877 | TCONS_00049435-exon-scaffold_159-1510915933:21850..21877 | Clytia hemisphaerica | exon |
TCONS_00049435-exon-scaffold_159-1491911889:25542..25618 | TCONS_00049435-exon-scaffold_159-1491911889:25542..25618 | Clytia hemisphaerica | exon |
TCONS_00049435-exon-scaffold_159-1491911889:25033..25138 | TCONS_00049435-exon-scaffold_159-1491911889:25033..25138 | Clytia hemisphaerica | exon |
TCONS_00049435-exon-scaffold_159-1491911889:22755..22871 | TCONS_00049435-exon-scaffold_159-1491911889:22755..22871 | Clytia hemisphaerica | exon |
TCONS_00049435-exon-scaffold_159-1491911889:22424..22550 | TCONS_00049435-exon-scaffold_159-1491911889:22424..22550 | Clytia hemisphaerica | exon |
TCONS_00049435-exon-scaffold_159-1491911889:21991..22058 | TCONS_00049435-exon-scaffold_159-1491911889:21991..22058 | Clytia hemisphaerica | exon |
TCONS_00049435-exon-scaffold_159-1491911889:21850..21877 | TCONS_00049435-exon-scaffold_159-1491911889:21850..21877 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_159 | supercontig | scaffold_159:21850..25618 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005488 | binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005488 |
binding |
Blast
BLAST of TCONS_00049435 vs. Swiss-Prot (Human)
Match: RRP12 (RRP12-like protein OS=Homo sapiens GN=RRP12 PE=1 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 8.507e-22 Identity = 67/179 (37.43%), Postives = 93/179 (51.96%), Query Frame = 1
Query: 1 MTLLESTTEEGSCTAVLYLLSLVIKKVPTTVLRTKCAESLKCFTVIMEAHHENGRASLLMGLLDCLATTLNAQDPAIWTEHSTQRSFQMMLMFIIHSKPKVRKVAHNSIQSILKLGLLNHKN----HPSGSLTAKHLIQ-IFQQNSSDTATMCHHSLNFLKNCLHYFGEKQLKELCEAI 522
MT +E+ S AV YLL+LV+K+VP+ VL K +++ K F IM A +G S+L +L CLAT L QD W T + + +L F +H KPK+RK A + + S+LK + HP+ TAK IQ I + S AT H L LK+ L F E +K E +
Sbjct: 152 MTTMEAVESPESLAAVAYLLNLVLKRVPSPVLIKKFSDTSKAFMDIMSAQASSGSTSVLRWVLSCLATLLRKQDLEAWGYPVTLQVYHGLLSFTVHPKPKIRKAAQHGVCSVLKGSEFMFEKAPAHHPAAISTAKFCIQEIEKSGGSKEATTTLHMLTLLKDLLPCFPEGLVKSCSETL 330
The following BLAST results are available for this feature:
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