TCONS_00049440 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049440
Unique NameTCONS_00049440
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049440 ID=TCONS_00049440|Name=TCONS_00049440|organism=Clytia hemisphaerica|type=transcript|length=2329bp
TTTTCGGACAGACTGAAGATAGAAACCGGTTATCCCTTTTACCTATTAAA
AGATGTGTGTTTTTCTCagtgatttttcattttaatgaGCGCGCGcggcg
aaattttttgtcagCGTGTCCATTTACCTCTCGCCTCGCAACcaccattt
tcaattttcaagccAGCCAAACCTTGACATTTTAAAGCAGAAAATCATTG
AGAAAGATTTAACAAGATGTTGAGGACTTCTTTGGTTCGTGCTGGCATTG
CCACTTCAAGGGCTCTCAAATCTCAAGCACCATCAGGAGTTGTTGCCGCC
AGATGGAGCAGCAGTAAGCCAAAAGAATCTGATGAAGCATTTGATGCAAG
ATGGGAAGCTTACTTTAACAGAGAAGATATTGATTCTTGGGAAGTCCGTA
AAGGAATGAATGAATTATATGGCTATGATCTTGTTCCCGAACCAAAAATT
ATCAGCTCCGCTTTAAAAGCATGTAGAAGAATCGATGACTTTGCTATGTC
TGTCCGTGTTTTTGAAATGGTCCGTGACAAAGCATGTGGTGATAAAGAAA
TCTACAATTATGTTCTCCAGCAATGTCGTGGAACCATTGATGAGCTTGGC
TTGTCCACACCTGAGGAATTAggaatttaaattttctttttgtaaattat
ACATGTTGtaattttgaatcattttaaACACCATGAACTTATTTTATCCT
CTTTGGTGACAGTTGTTTTCTGATTTATGCATTGTTTGGACGTCTTTGTA
GACAATATCTGCTCAGATGAGGTACAAAgtcaaaatctttatttgtttaT
CTTGTTAATAATAAGCTTATAGGGAGTCCGGCGAGTTTAAAGTTAATTTC
ACTTGTACATTCTGAAGTACAAACACATTTACTGTTTTAGCCTCCACTAG
ACCATATAGACAaggccaaaataagttctcagTAAATTAAAAAGTTGTGT
GtatttgccaaaataagttcttataaaattcaaTTGTTCTAACAATTTTT
TTAGGTTTAGTATAATAATGATGACCCAtgatattgttctttttttcgtT
TCGTTTCCAGCGAAAATAcgattaaaaatcaaataaaatgacaaataaaG
AAAGATACGATCTTTGGATCGGCAGTGAATTGGGACTTTTAAAAGGGGTT
GTGCTGAAGAAAGAGAGTTTCGTGAATTTCGGGGATATCACATCGCTTGA
TAAGACGCAGTGTATCACGTCAATGTGCTGGCAAAAACAGGATAAAAAAC
TGACTAATATTGTGTTTGGCTTGAAGAATGGCACAGTTAAAACATTTGAT
ACTTCAACCTGTGAAATGGGAACCTCGTTGACGTGTAACAAAGTGGCACC
AGTGCGTGGTGTGGCTGCTTTGCCTGATGGAAGTATTGTCACTTGTCTGG
AGAATGGAAATCTACAACGCTGGAAAAATGGCCAGTGTGATCTGGAGAAA
TCGGTTGGAGACGACATCAAAGTCATGGTTCACAACAAAAACACTAATGA
TGTCATCGCCACAGGTGGTCAGGAAAATGACCTCAAATTATGGCAACTCA
AATCTCTGGATAAACCTATCTTCACTGCGAAAAATGTAAAGAACGACTTT
TTGAATCTGCGAGTTCCGATATGGATAACAGCAATCGACTTTTTCAACGA
AGACAACAACCGTGTTGCAGTAGGTTCCGCAAACCACGTTGTTCGTGTCT
ATGATCGGAGGGAGAAACGTCGTCCTGTTTTCGAGACTGACTGGCACGAG
CACCCCATCACTGCACTGACGCTCAAACCAAACAACCACTCTATCTTCCT
TGGTAACAGTGCAGGTCACATGTCAGAGTTGGACCTCAGGAGCGGTAAAC
AGTTAGGCGCCTTCAAAGGAAATGCAGGCAGCATTCGAAGTATCGTTTGT
CataaaacgcaaccttatatcGGTGTTTGTGGCTTGGATCGCGTGTTCAA
ATTATATGATACTAACAGGAAGATTGTTAAACAGATTTATATGAAGTCCA
AtctcaatttcattttgatgcCCGACACTGAACTTCAGTTGACGGAAGTA
AGCGGAGAAAAACGTGAACGCGCGACCGAAGATGGAGAGGAAGCGGACGT
TTGGCAAAACATGGAAACAGTTAACGATgaaagcaaaagtgaaaaaccta
agaaaaagaaaaagaaataattttaaaaggAAACATTTTTTACACTAAAA
TTATTGATTGGCTTTTGTCTATCACTTTTATGAAACTTGATACCTTTAAA
TAGCGGTGGTGATTGGTAATTTGGTcacaaaagaatattttaattaCTTT
CCTCCGCCATagtttcaaattaattttcc
Run BLAST on NCBI

transcript from alignment at scaffold_159:57391..66798-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049440 ID=TCONS_00049440|Name=TCONS_00049440|organism=Clytia hemisphaerica|type=transcript|length=9408bp|location=Sequence derived from alignment at scaffold_159:57391..66798- (Clytia hemisphaerica)
TTTTCGGACAGACTGAAGATAGAAACCGGTTATCCCTTTTACCTATTAAA
AGATGTGTGTTTTTCTCAGTGATTTTTCATTTTAATGAGCGCGCGCGGCG
AAATTTTTTGTCAGCGTGTCCATTTACCTCTCGCCTCGCAACCACCATTT
TCAATTTTCAAGCCAGCCAAACCTTGACATTTTAAAGCAGAAAATCATTG
AGAAAGGTAAGCTTTAAAACTTCTGTATAACAACATCAAAATATTTGTTT
TCGATATTAGTTATGCATTCCTTTTTTTACAATCTCCTCTCCCTTTTGTA
GGGGGTCATCCTGCTGCGTTACAGCGAAAATATATTCAATTCAAATTCAA
CTCATCATCATCCCTCATCTAATATATTGACGATATTGACATCCTTCTTT
AGAGATATAGAGGAAGAATAGGAAAGTTGGGATCATTGATTGAAAAAGGA
TTTTCCTCTCTGACCACTAAGCAAAGTTTCGACCTTTCTACCGACCGTTC
CTTATTTTGTGCATAAGATTCCTTTCCTCCTGCACCAAAGATTACTCTTC
TGCCATTTACTTTTCTACTGGAAAAAGACCAGACCTCTGGGTACCATAAA
TCTAGATGAATACAACCACTTCATAATGATTTCAACCACTTCCTGATGAC
TTCGACCAACGTCATACTTTCTTAACCGTATGGAAAGGATATGATTCGTC
ATGTGACCTAATTCGGCAATTTGTCCTTCCCCCTCATGATAACACTTGCT
TTTCTTATCCCGCCCTTTCTCGCTTCAGGCCGAATCCTCAGATCACGGTT
CAAAACCACACATTTTCCCGTGCAAAAAAAGAAGCGCTTCAATGTTAGCG
CAGCAAAAGATGGGAACCATGACGCAACTGCCAGCATCGCGCAATTGAAT
CTCAATCGAACACAATCGAATATCAATCGAATATCAATTGAATCTGAAAA
TTGCGGTAATATTCAATTGAGATTCAATTACATTCGACAATCAAATTTCA
ATCGGTCGATTGCGTTCTATTTGGTTCGACTGGTTCAATCGTTGGTTCAG
TTCGATTGAGATCGTCTGGGAATGGTACAAGAAAAAACAAGTATCTTTAT
TCCTAGGGAAAATGGCAGTGTAGCTGGAACCTCGATATTCCAGGATTAGA
AAAAGCTATACCTGTTATCTTTTTTCTTTAAAGAATCAACAAGCCATCAA
CATCAATAAATTACACACATTTACTCAGAGAAACTTTTAAAATTATCTGC
CATTATGACTTTCTTGAAGCCGTTCTGAAATGAACCAATCGGGTTATGAA
TCGGAATTCCTATGGGAGTTCTTTTCCGAAAGTTGTAAAATAGCTAAGTC
GGCAAAAAAACTTTTCCCGGGGGTTTGAGGGAAAAACAGAACTGCTGTCA
TTTGTTTTTTATTTAACCATATATTTAAATTTGGGCTCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCGACATCGTTTATCATTTGGAATACCCCCGTATTTGGACCATTCTA
TGGTGGGCGCAAAATAGGGCGGAAACTAAGTAGCACCCTCAGTGCAAGAT
TGCCGCCTCATCTTTATTCGCCCGCGCGAGAATGCGAGCTAANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTCTAATTT
CGATCATCCTTTAAGATAAAGAGGTTGCGAGATTTGGGTTAGCGAGGCAA
AAATCGCTAAAAAGCTGGTAAAATCGTAATCCTCAAAAATTGATGTTCCA
GCCTCACTGAATGGGGGATAAAGGCCATTTTTAACCAATATTTTTGAAAC
TGTTATATAAAAGATTGCGGATGGAATGCGTGTCTTTTCATTTCAATCAT
GAGAATAAATATTCATGTTGGGTTTCACAAAAATTAGTTCCAATAAGGTA
CGAAGGAATAAATTTCAAAATAATGGAGGAATTAGAGAAGAAAGTTACAG
AGGAATAGAGTTGGAAGTAACAAAGAAAGTATTGAAGGAATAAAGTTTGA
AATAAGGAAGAAATCAAAGAAGAAAGCTACAGAAGAATAAGTTAAAACCA
ACCCAAATAATTTCAATAAAGTTATTGTTTTTTACGTAAATAAGTTTTGA
AATATTGGATACTTGAGTTTTTTTCTTGAAAACTCACAAAAATTAATCTT
ACGCAGTTTGTCCAGGTTTGTCTCCTGAAATCTCAAAAACCCGTAAGAAA
TTGAATTAAAAATGTCAAAAAAGCATCATCTTGCAAGAATTAAATTATTT
CTGAAAGAGTTTGTCTCGTGAAAATAAGTTCTCGCAAATATTGATCTCTT
ATTAAGGTATTAGATTTTCACTTTTCAAATAGATGCGAGGGAAACAACAA
CTACAACAACTATAATAAATAAAGTATGGTTTTTTATGTTAGCATAATAT
TTAATTTAATTAAAAACTTTATTTTTAACTTATCAGATTTAACAAGATGT
TGAGGACTTCTTTGGTTCGTGCTGGCATTGCCACTTCAAGGGCTCTCAAA
TCTCAAGCACCATCAGGAGTTGTTGCCGCCAGATGGAGCAGCAGTAAGCC
AAAAGAATCTGATGAAGCATTTGATGCAAGATGGGAAGCTTACTTTAACA
GAGAAGATATTGATTCTTGGGAAGTCCGTAAAGGAATGAATGAATTATAT
GGCTATGATCTTGTTCCCGAACCAAAAATTATCAGCTCCGCTTTAAAAGC
ATGTAGAAGAATCGATGACTTTGCTATGTCTGTCCGTGTTTTTGAAATGG
TCCGTGACAAAGCATGTGGTGATAAAGAAATCTACAATTATGTTCTCCAG
CAATGTCGTGGAACCATTGATGAGCTTGGCTTGTCCACACCTGAGGAATT
AGGAATTTAAATTTTCTTTTTGTAAATTATACATGTTGTAATTTTGAATC
ATTTTAAACACCATGAACTTATTTTATCCTCTTTGGTGACAGTTGTTTTC
TGATTTATGCATTGTTTGGACGTCTTTGTAGACAATATCTGCTCAGATGA
GGTACAAAGTCAAAATCTTTATTTGTTTATCTTGTTAATAATAAGCTTAT
AGGGAGTCCGGCGAGTTTAAAGTTAATTTCACTTGTACATTCTGAAGTAC
AAACACATTTACTGTTTTAGCCTCCACTAGACCATATAGACAAGGCCAAA
ATAAGTTCTCAGTAAATTAAAAAGTTGTGTGTATTTGCCAAAATAAGTTC
TTATAAAATTCAATTGTTCTAACAATTTTTTTAGGTTTAGTATAATAATG
ATGACCCATGATATTGTTCTTTTTTTCGTTTCGTTTCCAGCGAAAATACG
ATTAAAAATCAAATAAAATGACAAATAAAGAAAGATACGATCTTTGGATC
GGCAGTGAATTGGGACTTTTAAAAGGTAATGTATTCTTTTCTTAAGACTC
CCTATCCTCCTTCTTAGTATTTAGCAGTATAATAGCGTCAACATATTATT
GGAATGGAAGAAAGCAACCAAATCTTTTATTTTAGGGGTTGTGCTGAAGA
AAGAGAGTTTCGTGAATTTCGGGGATATCACATCGCTTGATAAGACGCAG
TGTATCACGTCAATGTGCTGGCAAAAACAGGATAAAAAACTGACTAATGT
AAGTGTTAGTTTACAGGTTTTTCCAAAAATTGCATAAATGGAGATTACCC
TTACCCTCGTGATTCTATTTTTTTTAACTAAGTTACAGTTTTTTAACTTT
TAGCCTAAAAGTTATTCTCAGTTATTAATTTTTTTAAAGCAGTTAAAGAA
TTTTTGTGAAATGACAATCTATGTTTCTAAGCTTTGCACGCACGGCTTCA
GGCACGACGGAAGCTTTTTATATCTGGTACGGCGAATGAGGAAATTTAAG
CGATTTTATAGCAATTTGACCGATGAAGAGGAAAACTTCGGGTATTTTTG
TGAAAATCTGGTACGGCGGCCGCCGTACCTGCCGTACCCGTTACGTCGTG
CCTGGGCTTAAATACTTCTTCTCTCAGCAAAATTTGCTACCAAATTGATA
TTTTTTATCCATTAAAAGATTATTCTACATATTTAGGCAAACCAACCATA
TAATAACCATGCTGGTCAAAAAATGGTTTTGTGTTATTGTTTTAGGTTAA
TTCTTAAGCTAGGAGTACAGACTTTTACGATTTTTGCAAATTTTCGTGAA
AACTTGGTGAAAATAATGTAAATTGTAAAATATAATCATACTGGAAAATT
TTTGATGAGGCAAATCGGGAAAGTTTATATGCACAGGAAATTTTCTTTAA
AAAATTGAAAATCTATAAAATGTTTAAACTGTGAAATTTCAAGTCAGTTC
AAGCGTATTTTTAATTTTTTAACAGCTTCTTAAAGGTACTGAAATCGTTT
TTGTCAGATTCAAGGAATACTAGTTATCCCTTTGAAGCCAATTTTCGTTT
GAAATTTCTCACTTTCACCGAACGATGCTGGATAGTTTATGCTCGTGAAA
AACATCCCTCCTCAAATTCGCAAAAGTAAATTTCGTAAATTTTGAAATTA
TTCGAACTCGTGAAAGTTATGGTGAAAGTTTGTAGGCCTTAAGTATATCA
GAAAGAGCTACCTTAAGGGAAGAAATTTTTTGCGGGAATTTAATTTCGCG
GTTGGTCTAATTATTTTTTTCGCGGGAATTTAATTTTGCGGTTCATCAAT
TTTCAAAAAATTTGCGGGAATTTAATTTCGCGGTTGCAAGATATTTTTGA
CCAAAAACGTTATTAATTAAACAAAAAACCTGTTTTAAGGCTTGAAATAG
TACGAATTTGGGGGAATGCGTGAAATAAACTAAATTTCGCGGGAATTTAA
TTTCGCGGATTGCCGATTTTGTAAAATTTCGTGGGAACTTAATTTCACGG
TTTTAGGCAAAATCCGCGAAAACCGCGAAATTTTGTTCCCGCGAAAATTT
CTTCCCTTAAGGTATTAAAAAATTCCTGTCCTTTGACTCGTCAACCAACT
TAAACCTGTTGAATTTCAGATTGTGTTTGGCTTGAAGAATGGCACAGTTA
AAACATTTGATACTTCAACCTGTGAAATGGGAACCTCGTTGACGTGTAAC
AAAGTGGCACCAGTGCGTGGTGTGGCTGCTTTGCCTGATGGAAGTATTGT
CACTTGTCTGGAGAATGGAAATCTACAACGCTGGAAAAATGGCCAGTGTG
ATGTAAGTGGAACTACAATCATGGTCGTTATGACACGAAAGGGGAATTCC
CTGCAAAACTTAAAAACCACAAACGAAGTATAAAATGCTAAGAATCAGGG
GAGGGGAGGCAGTAATAAAATAACAGACATCGTGAATTCAAGCGACAAGG
TAATTAATATACCAAAACATCTCCAAAATACCAAAAAAGACAGAAAAATG
TGTGGTATCTTGACAAAAAAATTAGTTTTTAATTAAATTGTTACTAAACC
AGTGATTTTAATCATTTTTTCATTAAAGTTAGTTTCGTTGACGTAAAATT
TACTCAGAAAAAAATCGTTCATCTTAAAAATCGTAAATATCTCGTAATCT
AACCAAAAGCCCTCTTAATAAAAAGCAACTTATGACGTCACCAGGAAATA
TGGCAGATTTTCGGCTGCTTGGACAGTTATAGATGGGTCTAATCGACGAA
ATTTTAAAAGAAACAGCATATTTATAAGCTACTTAACTTTCATTTCAGAT
AAAATAGCCGAAATGTATTTTTAAAGTTTTGTAGGAAGAGGTATACACGA
TGGTCCAGTGTTGAACGTCGATCTCTAAACTCTTTTTCCTACAACAAGAC
AACATCGTTAATCATTTTCTTCTCTTTGTTCAGCTGGAGAAATCGGTTGG
AGACGACATCAAAGTCATGGTTCACAACAAAAACACTAATGATGTCATCG
CCACAGGTGGTCAGGAAAATGACCTCAAATTATGGCAACTCAAATCTCTG
GATAAACCTATCTTCACTGCGAAAAATGTAACATCATTCTTCAGTCTATC
ATTTTATATCGTTTTTCTCTCATTCTACTCTGCGCATGACTTGAGTTATA
AAAAATTCCCGTCAAATCTACATTATTTTATTCTTTTCTCAAAATCGTTC
TATTTGAAGCCATATTGACCGTGCAAAAAGTGAGGTTTGAATGTCTATGA
AAGAAATAGAGCTTGTAAAACATTGCAGTTTGTTAAACAAATCATCCAAA
CAAACAGTGTGTGTTTCATTAAAGTTAGTTTCGTTGACGTAAAATTTACT
CAGAAAAAAATCATTGATCTTAAAAATCGTAGAGTTGACCCAATTCGTCC
TATTTCAACTCAAGCCTGAAAACAGGCTTTTCGCTATTTTGATAGTCTCT
GACCAAACGATTGAATTTCAATTTGAATTCCCGTCAAAATTTTCTCCTGT
ACTCTTAGGTGCCAAATAAACGGGGGGGTTCGAATAAACGGGGGGGTTGG
AAAAATTTTGAAATTTCAATAGACGGGGGGGGGACCTAATTGCCGGGGGG
GTTGGAAATTGTACTTATGAAAACCCCAAAATAAGGTAAATATAGGCTAA
AATCAGGCTTTTTGGAGCAAAATAAGGGGACTTCTTTTAGCCAATTGAAA
ATATTCTTTAAAATTAATAAACGGGGGGGGGACCTAATTGCCGGGGGGGT
TGGAAAAATTTTGAAATTTCAATAGACGGGGGGGGGACCTAATTGCCGGG
GGGGGTGGAAATTGTACTTATGAAAACCCCAAAATAAGGTAAATATAGGC
GAAAATCAGGCTTTTTGGAGCAAAATAAGGGGACTTCTTTTAGCCAATTG
AAAATATTCTTTAAAATTAATAAACGGGGGGGGTCCTAATAAGGTCCGGG
GGGGTTGGAAAATTTTCGAAAAATTAACAAGCGGGGGGGACCGTTTATTT
GGCACCTAAGAGTAAGGTGTTTTGATGATTATNAATTTGAATTCTCGTCA
AAATTTCCTCCTTTAAGGTATTTTGATGATTATCGTTTATGAGTATCGTT
TCAGGTAAAGAACGACTTTTTGAATCTGCGAGTTCCGATATGGATAACAG
CAATCGACTTTTTCAACGAAGACAACAACCGTGTTGCAGTAGGTTCCGCA
AACCACGTTGTTCGTGTCTATGATCGGAGGGAGAAACGTCGTCCTGTTTT
CGAGACTGACTGGCACGAGCACCCCATCACTGCACTGACGCTCAAACCAA
ACAACCACTCTATCTTCCTTGGTAACAGTGCAGGTCACATGTCAGAGTTG
GACCTCAGGAGCGGTAAACAGTTAGGCGCCTTCAAAGGAAATGCAGGCAG
CATTCGAAGTATCGTTTGTCATAAAACGCAACCTTATATCGGTGTTTGTG
GCTTGGATCGCGTGTTCAAATTATATGATACTAACAGGAAGATTGTTAAA
CAGGTGAGAAGTCAGTTTCAATGTAGTGAATTTTTTTATCTGAAAATGTT
ATATATTTTTTTAAAGAAGAGAATTTCAAAATAGGTCCATTTCATTTGTA
CATTTGATAAGTGGAGTAGCACGAAACTCTGAGTAGTGTACTTTTTTACT
TTCTGTTGTGAAGAAAGATATCTTTTAATATTTCTTTCTCTAGATTTATA
TGAAGTCCAATCTCAATTTCATTTTGATGCCCGACACTGAACTTCAGGTG
AGTCTTAACTATTGAACATGGAGAATTTAAAAACTGAACATTCGTTGGAT
ATTTTTTATACAATGCAAAACAGTATTAAAGATTTTGAGTTCTGGAAAAT
TTTAAACTCTCCNCTTGTAAAACATTGCAGTTTGTTAAACAAATCATCCA
AACAAACAGTGCGTGTTTCAAAGAGTTGGCCCAATTCGTCCTATTTCAAC
TCAAGCCTGAAAACAGGCTTTTCGCTATTTTGATAGTCTCTTTGACCATA
ATATTTAATTTCAATTTGAATTCTCGTCAAAATTTCCTCCTTTAAGGTAT
TTTGATGATTATCGTTTATGAGTATCGTTTCAGGTAAAGAACGACTTTTT
GAATCTGCGAGTTCCGATATGGATAACAGCAATCGACTTTTTCAACGAAG
ACAACAACCGTGTTGCAGTAGGTTCCGCAAACCACGTTGTTCGTGTCTAT
GATCGGAGGGAGAAACGTCGTCCTGTTTTCGAGACTGACTGGCACGAGCA
CCCCATCACTGCACTGACGCTCAAACCAAACAACCACTCTATCTTCCTTG
GTAACAGTGCAGGTCACATGTCAGAGTTGGACCTCAGGAGCGGTAAACAG
TTAGGCGCCTTCAAAGGAAATGCAGGCAGCATTCGAAGTATCGTTTGTCA
TAAAACGCAACCTTATATCGGTGTTTGTGGCTTGGATCGCGTGTTCAAAT
TATATGATACTAACAGGAAGATTGTTAAACAGGTGAGAAGTCAGTTTCAA
TGTAGTGAATTTTTTTATCTGAAAATGTTCTCGTTTTTAAAAGAAAAGAA
TTTCAAAATAGGTTCATTTCATTTGTACATTTGACATGTGGAGTAGCGCG
AAACTCTTGAGTAGTGTACTTTTTATTTTGTGATGAAAGATATCTTTTAA
TATTTCTTTCTCTAGATTTATATGAAGTCCAATCTCAATTTCATTTTGAT
GCCCGACACTGAACTTCAGGTTAGTCTTAACTATTGAACATGGAGAATTT
CTCCAGAATAGCCTTAATTTAAAAAACTCAACATTCGTTGGATATTTTTT
ATACAATGCAAAACAGTATTAAAGATTTTGAGTTCTGGAAAATTTTAAAC
TCTCACCTATCTTTCAGTTGACGGAAGTAAGCGGAGAAAAACGTGAACGC
GCGACCGAAGATGGAGAGGAAGCGGACGTTTGGCAAAACATGGAAACAGT
TAACGATGAAAGCAAAAGTGAAAAACCTAAGAAAAAGAAAAAGAAATAAT
TTTAAAAGGAAACATTTTTTACACTAAAATTATTGATTGGCTTTTGTCTA
TCACTTTTATGAAACTTGATACCTTTAAATAGCGGTGGTGATTGGTAATT
TGGTCACAAAAGAATATTTTAATTACTTTCCTCCGCCATAGTTTCAAATT
AATTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031379XLOC_031379Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049440-exon-scaffold_159-1575043694:66593..66798TCONS_00049440-exon-scaffold_159-1575043694:66593..66798Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1575043694:63024..63962TCONS_00049440-exon-scaffold_159-1575043694:63024..63962Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1575043694:62801..62913TCONS_00049440-exon-scaffold_159-1575043694:62801..62913Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1575043694:61247..61429TCONS_00049440-exon-scaffold_159-1575043694:61247..61429Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1575043694:60472..60615TCONS_00049440-exon-scaffold_159-1575043694:60472..60615Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1575043694:59046..59444TCONS_00049440-exon-scaffold_159-1575043694:59046..59444Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1575043694:58802..58855TCONS_00049440-exon-scaffold_159-1575043694:58802..58855Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1575043694:57391..57681TCONS_00049440-exon-scaffold_159-1575043694:57391..57681Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1510915933:66593..66798TCONS_00049440-exon-scaffold_159-1510915933:66593..66798Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1510915933:63024..63962TCONS_00049440-exon-scaffold_159-1510915933:63024..63962Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1510915933:62801..62913TCONS_00049440-exon-scaffold_159-1510915933:62801..62913Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1510915933:61247..61429TCONS_00049440-exon-scaffold_159-1510915933:61247..61429Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1510915933:60472..60615TCONS_00049440-exon-scaffold_159-1510915933:60472..60615Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1510915933:59046..59444TCONS_00049440-exon-scaffold_159-1510915933:59046..59444Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1510915933:58802..58855TCONS_00049440-exon-scaffold_159-1510915933:58802..58855Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1510915933:57391..57681TCONS_00049440-exon-scaffold_159-1510915933:57391..57681Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1491911889:66593..66798TCONS_00049440-exon-scaffold_159-1491911889:66593..66798Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1491911889:63024..63962TCONS_00049440-exon-scaffold_159-1491911889:63024..63962Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1491911889:62801..62913TCONS_00049440-exon-scaffold_159-1491911889:62801..62913Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1491911889:61247..61429TCONS_00049440-exon-scaffold_159-1491911889:61247..61429Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1491911889:60472..60615TCONS_00049440-exon-scaffold_159-1491911889:60472..60615Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1491911889:59046..59444TCONS_00049440-exon-scaffold_159-1491911889:59046..59444Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1491911889:58802..58855TCONS_00049440-exon-scaffold_159-1491911889:58802..58855Clytia hemisphaericaexon
TCONS_00049440-exon-scaffold_159-1491911889:57391..57681TCONS_00049440-exon-scaffold_159-1491911889:57391..57681Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_159supercontigscaffold_159:57391..66798 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.78003	1.7358	2.84941	2.85569	1.82104	0.850325	1.81502	1.55144	0.982324	0.832408	1.3681	1.47164	0.449042	0.551123	0.522805	0.972487	1.19802	1.18071	0.717733	0.273111	2.37273	2.08417	1.40755	1.40763	1.84523	1.11749	1.85162	1.9761	1.22629	0.694108
Blast
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BLAST of TCONS_00049440 vs. Swiss-Prot (Human)
Match: WDR74 (WD repeat-containing protein 74 OS=Homo sapiens GN=WDR74 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.375e-58
Identity = 115/329 (34.95%), Postives = 183/329 (55.62%), Query Frame = 2 
Query: 1172 VNFGDITSLDKTQCITSMCWQKQDKKLTNIVFGLKNGTVKTFDTSTCEMGTSLTC-NKVAPVRGVAALPDGSIVTCLENGNLQRWKNGQCD------LEKSVGDDIKVMVHNKNTNDVIATGGQENDLKLWQLKSLDKPIFTAKNVKNDFLNLRVPIWITAIDFFNEDNNRVAVGSANHVVRVYD-RREKRRPVFETDWHEHPITALTLKPNNHSIFLGNSAGHMSELDLRSGKQLGAFKGNAGSIRSIVCHKTQPYIGVCGLDRVFKLY--DTNRKIVKQIYMKSNLNFILMP--DTELQLTEVSGEKRERATEDGEEADVWQNMETV 2122
             NF       + + ++++CW    +  T ++ G  + TVK F T          C       RG+A   DG+++TC+++G L+ W +   D      LE  VG  +  M  +     V+ATGG+EN LK+W L+  ++P+F AKNV+ND+L+LRVPIW   I F    + ++   +  H VRVYD    +RRPV ET + E+P+TA+TL P  +S+ +GN+ G ++E+DLR G+ LG  KG AGS+R + CH ++P +  CGLDRV +++     R +  ++Y+KS LN +L+   D      +   E  +   ED E  ++W ++E  
Sbjct:   31 ANFTAGGQPRREEAVSALCWGTGGE--TQMLVGCADRTVKHFSTEDGIFQGQRHCPGGEGMFRGLAQA-DGTLITCVDSGILRVWHDKDKDTSSDPLLELRVGPGVCRMRQDPAHPHVVATGGKENALKIWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDIQFL-PGSQKLVTCTGYHQVRVYDPASPQRRPVLETTYGEYPLTAMTLTPGGNSVIVGNTHGQLAEIDLRQGRLLGCLKGLAGSVRGLQCHPSKPLLASCGLDRVLRIHRIQNPRGLEHKVYLKSQLNCLLLSGRDNWEDEPQEPQEPNKVPLEDTETDELWASLEAA 355
The following BLAST results are available for this feature:
BLAST of TCONS_00049440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR746.375e-5834.95WD repeat-containing protein 74 OS=Homo sapiens GN... [more]
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