|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049441 ID=TCONS_00049441|Name=TCONS_00049441|organism=Clytia hemisphaerica|type=transcript|length=1447bpRun BLAST on NCBI protein sequence of TCONS_00049441-protein >TCONS_00049441-protein ID=TCONS_00049441-protein|Name=TCONS_00049441-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp MAEIGPAVVIVGLLALILNFGVHKVEEGHVAVYYRGGALLSSTSGPGFHVRun BLAST on NCBI transcript from alignment at scaffold_159:78275..99057- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049441 ID=TCONS_00049441|Name=TCONS_00049441|organism=Clytia hemisphaerica|type=transcript|length=20783bp|location=Sequence derived from alignment at scaffold_159:78275..99057- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_159:78275..99057- >TCONS_00049441 ID=TCONS_00049441|Name=TCONS_00049441|organism=Clytia hemisphaerica|type=CDS|length=12441bp|location=Sequence derived from alignment at scaffold_159:78275..99057- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049441 vs. Swiss-Prot (Human)
Match: ERLN2 (Erlin-2 OS=Homo sapiens GN=ERLIN2 PE=1 SV=1) HSP 1 Score: 467.233 bits (1201), Expect = 2.322e-162 Identity = 222/307 (72.31%), Postives = 262/307 (85.34%), Query Frame = 3
Query: 81 MAEIGPXXXXXXXXXXXXNF-GVHKVEEGHVAVYYRGGALLSSTSGPGFHVMFPFLTTFRSVQTTLQTDEVKNVPCGTSGGVVIYFDRIEVVNILTVSEVYNIVKNYTADYDKSLIFNKVHHELNQFCSVHTLQEVYINLFDQIDENLKKALQEDLTQMAPGLKIQAVRVTKPKIPEQIRKNYELMEGEKTKLLITTQHQKVMEKEAETERKLAVIQAEKHSQVAKIQYGQKIMEKESQRQISEIEDKTHLAKQKAMADAEFYTQNKQAEANKLKLSPEYLDFMRIQAIANNNKIYYGNNLPNVFID 998
MA++G V + F VHK+EEGH+ VYYRGGALL+STSGPGFH+M PF+T+++SVQTTLQTDEVKNVPCGTSGGV+IYFDRIEVVN L + VY+IVKNYTADYDK+LIFNK+HHELNQFCSVHTLQEVYI LFDQIDENLK ALQ+DLT MAPGL IQAVRVTKP IPE IR+NYELME EKTKLLI Q QKV+EKEAETERK A+I+AEK +QVA+I YGQK+MEKE++++ISEIED LA++KA ADAE YT K AEANKLKL+PEYL M+ +AIA+N+KIY+G ++PN+F+D
Sbjct: 1 MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEIEDAAFLAREKAKADAECYTAMKIAEANKLKLTPEYLQLMKYKAIASNSKIYFGKDIPNMFMD 307 The following BLAST results are available for this feature:
BLAST of TCONS_00049441 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.