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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049477 ID=TCONS_00049477|Name=TCONS_00049477|organism=Clytia hemisphaerica|type=transcript|length=3196bpRun BLAST on NCBI protein sequence of TCONS_00049477-protein >TCONS_00049477-protein ID=TCONS_00049477-protein|Name=TCONS_00049477-protein|organism=Clytia hemisphaerica|type=polypeptide|length=643bp MDDSDEEIQPLKRKKKGSDTPIRTSRGIVKHSKLRAAKDCSTSISVKFKDRun BLAST on NCBI transcript from alignment at scaffold_16:121869..149058+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049477 ID=TCONS_00049477|Name=TCONS_00049477|organism=Clytia hemisphaerica|type=transcript|length=27190bp|location=Sequence derived from alignment at scaffold_16:121869..149058+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_16:121869..149058+ >TCONS_00049477 ID=TCONS_00049477|Name=TCONS_00049477|organism=Clytia hemisphaerica|type=CDS|length=11592bp|location=Sequence derived from alignment at scaffold_16:121869..149058+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00049477 vs. Swiss-Prot (Human)
Match: DCR1A (DNA cross-link repair 1A protein OS=Homo sapiens GN=DCLRE1A PE=1 SV=3) HSP 1 Score: 360.918 bits (925), Expect = 1.206e-106 Identity = 176/340 (51.76%), Postives = 229/340 (67.35%), Query Frame = 2
Query: 1244 KECPFYKKIPGTNFTVDAFRYGDIKGCTCYFLTHFHSDHYGGLKKSFKGKLYCSQITASLVTSQLRVSSACIHVLPMNKTVEVEGVKITLFDANHCPGAVMFLMELPSPSKRILHVGDFRANLQMTEIPLIKSRPIDCLYLDTTYCKPEYSFPPQNDVIEFVVKTARRYLKENPKTLIVCGTYSIGKEKVLQAIANEFDFKVAVTPHKMKILKCLNDTSLNQRLTLDYDEANVHVLAMNKLSIKLLHEHLVEHQQTRKWQRILAFKPTGWTFSGKLTSLDKIEPIIRPDVTIYGVPYSEHSSFEELKSFVSALKPKKILATVGIGNKETRDRMNEYFTEW 2263
K CPFYKKIPGT FTVDAF+YG ++GCT YFLTHFHSDHY GL K F +YCS+IT +L+ ++L V IH LP++ V GVK+ L DANHCPGAVM L LP+ + ILH GDFRA+ M E L+ + + LYLDTTYC PEY+FP Q +VI F + TA + NP L+VCGTYSIGKEKV AIA+ KV ++ K K L+CLN +N +T D + VH+L M +++ K L HL + K+ +ILAF+PTGWT S K T + + P + +++IYG+PYSEHSS+ E+K FV LKP+KI+ TV +G ++R M +YF EW
Sbjct: 699 KTCPFYKKIPGTGFTVDAFQYGVVEGCTAYFLTHFHSDHYAGLSKHFTFPVYCSEITGNLLKNKLHVQEQYIHPLPLDTECIVNGVKVVLLDANHCPGAVMILFYLPNGT-VILHTGDFRADPSM-ERSLLADQKVHMLYLDTTYCSPEYTFPSQQEVIRFAINTAFEAVTLNPHALVVCGTYSIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIPEINSLITTDMCSSLVHLLPMMQINFKGLQSHL--KKCGGKYNQILAFRPTGWTHSNKFTRIADVIPQTKGNISIYGIPYSEHSSYLEMKRFVQWLKPQKIIPTVNVGTWKSRSTMEKYFREW 1034 The following BLAST results are available for this feature:
BLAST of TCONS_00049477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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