TCONS_00049527 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049527
Unique NameTCONS_00049527
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3175

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049527 ID=TCONS_00049527|Name=TCONS_00049527|organism=Clytia hemisphaerica|type=transcript|length=3175bp
agcGGTGGTTGTTTGTTGGACTTGGTTGCTACTTATTTTCTTGTATAGCA
TGGATGAATCAACTTTGTTGAAGAATTTGGCGTTCCAGTTTGGTATCGAA
GCTTTTCACCAGCCCCAAGTTAATGTTCTGAGGGCATTTTTTAATGGAAA
ACACACATATTTCAGTGCCCCAACAGGCTATGGAAAGTCAGTTGTTTTCC
AAGCAGTGCCGAGGTACTTTGAGGAGTTACGTCCAGAGATTAGCAATCCA
GTGCTTCTAGTATTTTCACCACTCATAGCCTTGATAAACGATCAGATCAA
GGCTGCTGGGGATAGCTGTATCATGGCTATTTCCTTAGACAAGACTGTAA
CTGATGAGTGTTATGAAGGTATGTCTATATTATTTAGATTTAGAATTATT
TTACTTAAGATAAGTCTGGTTGTTAGTATAGACTCTAGATTCATCAACAA
AGAAGTACTCTTCTCTTAACTTAGGGGCCTACTGTAATAAATTAATACTT
CGTCCTAAATTGATATTCATATAAGCCCTACCGTGaacatcaaatgactg
accaatcaaagcagaagaatttcaaaacaaatgaactacgcagctccatt
cacagctctactctacaatttttgttttgattttatatactttgtatttt
aatgaccgaccaggtcattcatttgagggctatgcatgttatccTCCACT
GATgaaagttacccgatctcacagtaACAATTAGCATGGAGTAACATGGC
TTTACTTTCAGGCGACTTCAGATAAATAACCCCTCGTTTCCTTAAACATT
TTGGCAAATAACCCTCAATAACTGTCATTTGTTTATTACACACCAAAGAG
TAGAGCAATAGCAATGTACTATTAAGTAAGCTGTCAGATAGTACAGCAgt
ttcattttataatatctctTAAAAAGTTTTATCTGAATTCAATGTTGTTC
CCTCCAAGATATCAAAGCTGGTACATATTCATTGGTGTATGCCTGTCCAG
AAGTGTTGGAGACGAAACGTTGGCGAATGTTGTTTTCTGATTCTGAGTTT
GTTGACCGTTGTATAGGAGTCGTAGTTGATGAAGCACATGTAATGGTTGA
ATGGTTTGTAGATTATTTTAATCTTTCGGAAAGGCTTTACCATGTTTTTT
TCATGACATTAATGAACCACATTTTTTTGTCTTCTAAAATTTTACAAACC
TCCTGCTCTCTAACACTactaattttctatttttgagtGTCTCTTCATAT
ATTATATGTCAACTAACCAGTCGTTACACGATTTCACTTAAAACATATTT
AACAACCATAGGGGCAAGTCATCAAATGAATCCACAAAAGCATTCAGAGA
AAGCTATTCCAAGATTGTTGAGCTGCAAAGTCTCTTGTCATCAAAAGCAA
GGTTCATGTTGTTCACTGCCACTGCAACCTCTGCTACTCAGGCCACCATC
TTCTCAATGCTAAATCTTCAATCAAACGATGTGTACTGTGAAATATATCA
CCCTAACAAAAATAATGTTAGATTCACAGTCGAGCAGATTTCAATGGGCA
AAGAGGATGGCAGGTATCTTGTCAATTTCTTTGACTTTATCATGGAAGAA
ATAATTGCCAAAAAAGAGCATACCTGCAAAACCATTATATATGTCAACAC
AAGAAAGGAGGTCAACCTGTTAAATAATGGAATGGCCTCTAAACTCGGAG
TTGATCTTTTTCTTAGTGGAAAGGAGGGTAATCCAAGGTACCGCCTTGTT
GAAGAGTTCCATGCATATAGTCCACAGTCAGTAAAAAATCATGTCCTTGC
CCAAGCTTCAATCCTTGAAAGTCATCTACGTGTCATCATATGCACATCAG
CTTTTGGTATGGGGGTCAATGTTAAAGGTTTTAACCGATGCATCCATTTT
GGACCGCCCTCTACGGTTGAATCTTTTGTTCAGGAGGTTGGCAGAGTTGG
TAGAGATGGTTCACCAAGCGAAAGTATTTTGATGTTCCATAAAAGTTTGG
CAACCCATGCATCGTCTGATATGGTTGAGTATGCTGGAAGCCATGTTAAG
TGTAGGCGGGATTTTTTGATGGTCAAGTTTCCAGGGACCTACTCGTCTCT
TTCTAACTGTACTTGTTGTGATCTTTGTTCAAATGTCTGTCAATGTAAGG
AACCAAATTGTTGTAAGAAATTGAAGCAACTTAATGTGAATGCTCAAGCT
CCTGTAACTGAGCGTAGAAGAAACGTATCAATGGCTGAAAGGGATGAACT
TAGGGGGTTATTGAATGATTTCCGTATGGAGatcttcaataaaaagaaaa
atctaaaacagGTATCATTGCCTAACTTGTTCCATGAGTTCACAGAGTAC
CATGTGAAGCAAGTTATGGTAAAtgttacaaaaattttcaacatccaaGA
TCTTAAATCTCGTGTTGAGATCTGGCGGACAAGACATGCAATCGAAGTCT
TAAAAATTATAAACTCTGTTTTTCATGATATTGAAATAGACCAAATGGAA
CAGCTAAATCTTGAAGAGGAGCCTCTGGGGCTTGATGATGCAAGTTTTAT
GAATGATACCAGATATCAATCTGTGACAGACTCACAAGTCAATAGCTATC
TTCTTTCTGATTGCACTGATGGCAATATTTCGAAACGAACTCTTGAAGAT
GAAGACTTTTAATTTATACTTACATGTTTTGTGCACCCCTTTATCagggg
gttggtctaaaaagcagggttaGCTTGTGGGGTACCCCTTTTTTGCCCAA
ATATTTGAAGGCTAGTGCAGGCTAGTGTTTTAATTTGTTAAAATACAATG
TTAGAACCTTTAACAGAAATCTggtttaaatttaaaatccccAACATTCT
AAAACagactcaaaatgaaaatcagacCAATGGGTTATCTCATAACATCA
ATGGATAATTTACCTCATACCTATGATAACTTTAGGGATTCACACCTTGT
AGTTGTAAGGATTACATATCAAGGATACATTTATTAATTATAGGTAATCA
AAAGGTCTAAGTTCAAATAgtagaaaaaacaaattttgaccATGTTGTGT
taattcaagttaaatctttggCTACCCtcctttttagaccaacccattAT
CAGGTCAGTTATAGTTAAGGAAAGTCCAAATCATAAAGACAAATTCAATA
TTGTCATTATTGGAAATAGAGAGAT
Run BLAST on NCBI

transcript from alignment at scaffold_160:45497..49244+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049527 ID=TCONS_00049527|Name=TCONS_00049527|organism=Clytia hemisphaerica|type=transcript|length=3748bp|location=Sequence derived from alignment at scaffold_160:45497..49244+ (Clytia hemisphaerica)
agcGGTGGTTGTTTGTTGGACTTGGTTGCTACTTATTTTCTTGTATAGCA
TGGATGAATCAACTTTGTTGAAGAATTTGGCGTTCCAGTTTGGTATCGAA
GCTTTTCACCAGCCCCAAGTTAATGTTCTGAGGGCATTTTTTAATGGAAA
ACACACATATTTCAGTGCCCCAACAGGTTTGATTTGACAGGCAGTCATTA
TAGTAGTTTCATCTCTCCCAAAAACTCTACTTTATTTGAGACAACTTCTC
AAGATTGACCATCTAGGCTACTAGGCAGGCATCAtacttaaaaatggttt
ttgaATTATACCCATCAAAACAGCAGGGTAAAGATTCCAATTTTATCAAA
CGTACGTGTGTTTATActataataaaattaaaaaaattaagaaagctTAA
ACAAATTTAACGTAGTCataaattaaaaatcagttGTGTTATTGTCATTT
AGGCTATGGAAAGTCAGTTGTTTTCCAAGCAGTGCCGAGGTACTTTGAGG
AGTTACGTCCAGAGATTAGCAATCCAGTGCTTCTAGTATTTTCACCACTC
ATAGCCTTGATAAACGATCAGATCAAGGCTGCTGGGGATAGCTGTATCAT
GGCTATTTCCTTAGACAAGACTGTAACTGATGAGTGTTATGAAGGTATGT
CTATATTATTTAGATTTAGAATTATTTTACTTAAGATAAGTCTGGTTGTT
AGTATAGACTCTAGATTCATCAACAAAGAAGTACTCTTCTCTTAACTTAG
GGGCCTACTGTAATAAATTAATACTTCGTCCTAAATTGATATTCATATAA
GCCCTACCGTGaacatcaaatgactgaccaatcaaagcagaagaatttca
aaacaaatgaactacgcagctccattcacagctctactctacaatttttg
ttttgattttatatactttgtattttaatgaccgaccaggtcattcattt
gagggctatgcatgttatccTCCACTGATgaaagttacccgatctcacag
taACAATTAGCATGGAGTAACATGGCTTTACTTTCAGGCGACTTCAGATA
AATAACCCCTCGTTTCCTTAAACATTTTGGCAAATAACCCTCAATAACTG
TCATTTGTTTATTACACACCAAAGAGTAGAGCAATAGCAATGTACTATTA
AGTAAGCTGTCAGATAGTACAGCAgtttcattttataatatctctTAAAA
AGTTTTATCTGAATTCAATGTTGTTCCCTCCAAGATATCAAAGCTGGTAC
ATATTCATTGGTGTATGCCTGTCCAGAAGTGTTGGAGACGAAACGTTGGC
GAATGTTGTTTTCTGATTCTGAGTTTGTTGACCGTTGTATAGGAGTCGTA
GTTGATGAAGCACATGTAATGGTTGAATGGTTTGTAGATTATTTTAATCT
TTCGGAAAGGCTTTACCATGTTTTTTTCATGACATTAATGAACCACATTT
TTTTGTCTTCTAAAATTTTACAAACCTCCTGCTCTCTAACACTactaatt
ttctatttttgagtGTCTCTTCATATATTATATGTCAACTAACCAGTCGT
TACACGATTTCACTTAAAACATATTTAACAACCATAGGGGCAAGTCATCA
AATGAATCCACAAAAGCATTCAGAGAAAGCTATTCCAAGATTGTTGAGCT
GCAAAGTCTCTTGTCATCAAAAGCAAGGTTCATGTTGTTCACTGCCACTG
CAACCTCTGCTACTCAGGCCACCATCTTCTCAATGCTAAATCTTCAATCA
AACGATGTGTACTGTGAAATATATCACCCTAACAAAAATAATGTTAGGTA
ATAATTATTTAACTTTGGTATATACAAAATATTCAACTAATTTTCTGATC
TGACATTTTGTGGTTACAGTATAGTAAAATTATAGTTATGATGGATGATA
ATAGAtatttgattataaaaaattaGTAATAGCTCTCTTAGTAGATAATG
TTATTAGAAGAAATTCCTAAACTTTGTCTGTCAGGTTTCAaatcaaatct
ttaaaaagaaatttttttattcacaaGGATTTTTAGACTTCAAGAAAAAG
TACAATGATAAGGCTATCAGTATCACATCATTTTTTGTCAATAGATTCAC
AGTCGAGCAGATTTCAATGGGCAAAGAGGATGGCAGGTATCTTGTCAATT
TCTTTGACTTTATCATGGAAGAAATAATTGCCAAAAAAGAGCATACCTGC
AAAACCATTATATATGTCAACACAAGAAAGGAGGTCAACCTGTTAAATAA
TGGAATGGCCTCTAAACTCGGAGTTGATCTTTTTCTTAGTGGAAAGGAGG
GTAATCCAAGGTACCGCCTTGTTGAAGAGTTCCATGCATATAGTCCACAG
TCAGTAAAAAATCATGTCCTTGCCCAAGCTTCAATCCTTGAAAGTCATCT
ACGTGTCATCATATGCACATCAGCTTTTGGTATGGGGGTCAATGTTAAAG
GTTTTAACCGATGCATCCATTTTGGACCGCCCTCTACGGTTGAATCTTTT
GTTCAGGAGGTTGGCAGAGTTGGTAGAGATGGTTCACCAAGCGAAAGTAT
TTTGATGTTCCATAAAAGTTTGGCAACCCATGCATCGTCTGATATGGTTG
AGTATGCTGGAAGCCATGTTAAGTGTAGGCGGGATTTTTTGATGGTCAAG
TTTCCAGGGACCTACTCGTCTCTTTCTAACTGTACTTGTTGTGATCTTTG
TTCAAATGTCTGTCAATGTAAGGAACCAAATTGTTGTAAGAAATTGAAGC
AACTTAATGTGAATGCTCAAGCTCCTGTAACTGAGCGTAGAAGAAACGTA
TCAATGGCTGAAAGGGATGAACTTAGGGGGTTATTGAATGATTTCCGTAT
GGAGatcttcaataaaaagaaaaatctaaaacagGTATCATTGCCTAACT
TGTTCCATGAGTTCACAGAGTACCATGTGAAGCAAGTTATGGTAAAtgtt
acaaaaattttcaacatccaaGATCTTAAATCTCGTGTTGAGATCTGGCG
GACAAGACATGCAATCGAAGTCTTAAAAATTATAAACTCTGTTTTTCATG
ATATTGAAATAGACCAAATGGAACAGCTAAATCTTGAAGAGGAGCCTCTG
GGGCTTGATGATGCAAGTTTTATGAATGATACCAGATATCAATCTGTGAC
AGACTCACAAGTCAATAGCTATCTTCTTTCTGATTGCACTGATGGCAATA
TTTCGAAACGAACTCTTGAAGATGAAGACTTTTAATTTATACTTACATGT
TTTGTGCACCCCTTTATCagggggttggtctaaaaagcagggttaGCTTG
TGGGGTACCCCTTTTTTGCCCAAATATTTGAAGGCTAGTGCAGGCTAGTG
TTTTAATTTGTTAAAATACAATGTTAGAACCTTTAACAGAAATCTggttt
aaatttaaaatccccAACATTCTAAAACagactcaaaatgaaaatcagac
CAATGGGTTATCTCATAACATCAATGGATAATTTACCTCATACCTATGAT
AACTTTAGGGATTCACACCTTGTAGTTGTAAGGATTACATATCAAGGATA
CATTTATTAATTATAGGTAATCAAAAGGTCTAAGTTCAAATAgtagaaaa
aacaaattttgaccATGTTGTGTtaattcaagttaaatctttggCTACCC
tcctttttagaccaacccattATCAGGTCAGTTATAGTTAAGGAAAGTCC
AAATCATAAAGACAAATTCAATATTGTCATTATTGGAAATAGAGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031419XLOC_031419Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049527-exon-scaffold_160-1491911889:45497..45672TCONS_00049527-exon-scaffold_160-1491911889:45497..45672Clytia hemisphaericaexon
TCONS_00049527-exon-scaffold_160-1510915933:45497..45672TCONS_00049527-exon-scaffold_160-1510915933:45497..45672Clytia hemisphaericaexon
TCONS_00049527-exon-scaffold_160-1575043694:45497..45672TCONS_00049527-exon-scaffold_160-1575043694:45497..45672Clytia hemisphaericaexon
TCONS_00049527-exon-scaffold_160-1491911889:45949..47293TCONS_00049527-exon-scaffold_160-1491911889:45949..47293Clytia hemisphaericaexon
TCONS_00049527-exon-scaffold_160-1510915933:45949..47293TCONS_00049527-exon-scaffold_160-1510915933:45949..47293Clytia hemisphaericaexon
TCONS_00049527-exon-scaffold_160-1575043694:45949..47293TCONS_00049527-exon-scaffold_160-1575043694:45949..47293Clytia hemisphaericaexon
TCONS_00049527-exon-scaffold_160-1491911889:47591..49244TCONS_00049527-exon-scaffold_160-1491911889:47591..49244Clytia hemisphaericaexon
TCONS_00049527-exon-scaffold_160-1510915933:47591..49244TCONS_00049527-exon-scaffold_160-1510915933:47591..49244Clytia hemisphaericaexon
TCONS_00049527-exon-scaffold_160-1575043694:47591..49244TCONS_00049527-exon-scaffold_160-1575043694:47591..49244Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_160supercontigscaffold_160:45497..49244 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.149864	0	0.612297	0.631828	0	0	0.0688011	0.245211	0.152518	0.622181	0.414094	0.0242496	0	0.0711807	0.185339	0.0426087	0.431701	0.234789	0.345605	0.496747	0	0.90748	0	0	0.0278378	0.178947	0	0.359039	0.371302	7.1789e-07
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049527 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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