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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049527 ID=TCONS_00049527|Name=TCONS_00049527|organism=Clytia hemisphaerica|type=transcript|length=3175bp
agcGGTGGTTGTTTGTTGGACTTGGTTGCTACTTATTTTCTTGTATAGCA
TGGATGAATCAACTTTGTTGAAGAATTTGGCGTTCCAGTTTGGTATCGAA
GCTTTTCACCAGCCCCAAGTTAATGTTCTGAGGGCATTTTTTAATGGAAA
ACACACATATTTCAGTGCCCCAACAGGCTATGGAAAGTCAGTTGTTTTCC
AAGCAGTGCCGAGGTACTTTGAGGAGTTACGTCCAGAGATTAGCAATCCA
GTGCTTCTAGTATTTTCACCACTCATAGCCTTGATAAACGATCAGATCAA
GGCTGCTGGGGATAGCTGTATCATGGCTATTTCCTTAGACAAGACTGTAA
CTGATGAGTGTTATGAAGGTATGTCTATATTATTTAGATTTAGAATTATT
TTACTTAAGATAAGTCTGGTTGTTAGTATAGACTCTAGATTCATCAACAA
AGAAGTACTCTTCTCTTAACTTAGGGGCCTACTGTAATAAATTAATACTT
CGTCCTAAATTGATATTCATATAAGCCCTACCGTGaacatcaaatgactg
accaatcaaagcagaagaatttcaaaacaaatgaactacgcagctccatt
cacagctctactctacaatttttgttttgattttatatactttgtatttt
aatgaccgaccaggtcattcatttgagggctatgcatgttatccTCCACT
GATgaaagttacccgatctcacagtaACAATTAGCATGGAGTAACATGGC
TTTACTTTCAGGCGACTTCAGATAAATAACCCCTCGTTTCCTTAAACATT
TTGGCAAATAACCCTCAATAACTGTCATTTGTTTATTACACACCAAAGAG
TAGAGCAATAGCAATGTACTATTAAGTAAGCTGTCAGATAGTACAGCAgt
ttcattttataatatctctTAAAAAGTTTTATCTGAATTCAATGTTGTTC
CCTCCAAGATATCAAAGCTGGTACATATTCATTGGTGTATGCCTGTCCAG
AAGTGTTGGAGACGAAACGTTGGCGAATGTTGTTTTCTGATTCTGAGTTT
GTTGACCGTTGTATAGGAGTCGTAGTTGATGAAGCACATGTAATGGTTGA
ATGGTTTGTAGATTATTTTAATCTTTCGGAAAGGCTTTACCATGTTTTTT
TCATGACATTAATGAACCACATTTTTTTGTCTTCTAAAATTTTACAAACC
TCCTGCTCTCTAACACTactaattttctatttttgagtGTCTCTTCATAT
ATTATATGTCAACTAACCAGTCGTTACACGATTTCACTTAAAACATATTT
AACAACCATAGGGGCAAGTCATCAAATGAATCCACAAAAGCATTCAGAGA
AAGCTATTCCAAGATTGTTGAGCTGCAAAGTCTCTTGTCATCAAAAGCAA
GGTTCATGTTGTTCACTGCCACTGCAACCTCTGCTACTCAGGCCACCATC
TTCTCAATGCTAAATCTTCAATCAAACGATGTGTACTGTGAAATATATCA
CCCTAACAAAAATAATGTTAGATTCACAGTCGAGCAGATTTCAATGGGCA
AAGAGGATGGCAGGTATCTTGTCAATTTCTTTGACTTTATCATGGAAGAA
ATAATTGCCAAAAAAGAGCATACCTGCAAAACCATTATATATGTCAACAC
AAGAAAGGAGGTCAACCTGTTAAATAATGGAATGGCCTCTAAACTCGGAG
TTGATCTTTTTCTTAGTGGAAAGGAGGGTAATCCAAGGTACCGCCTTGTT
GAAGAGTTCCATGCATATAGTCCACAGTCAGTAAAAAATCATGTCCTTGC
CCAAGCTTCAATCCTTGAAAGTCATCTACGTGTCATCATATGCACATCAG
CTTTTGGTATGGGGGTCAATGTTAAAGGTTTTAACCGATGCATCCATTTT
GGACCGCCCTCTACGGTTGAATCTTTTGTTCAGGAGGTTGGCAGAGTTGG
TAGAGATGGTTCACCAAGCGAAAGTATTTTGATGTTCCATAAAAGTTTGG
CAACCCATGCATCGTCTGATATGGTTGAGTATGCTGGAAGCCATGTTAAG
TGTAGGCGGGATTTTTTGATGGTCAAGTTTCCAGGGACCTACTCGTCTCT
TTCTAACTGTACTTGTTGTGATCTTTGTTCAAATGTCTGTCAATGTAAGG
AACCAAATTGTTGTAAGAAATTGAAGCAACTTAATGTGAATGCTCAAGCT
CCTGTAACTGAGCGTAGAAGAAACGTATCAATGGCTGAAAGGGATGAACT
TAGGGGGTTATTGAATGATTTCCGTATGGAGatcttcaataaaaagaaaa
atctaaaacagGTATCATTGCCTAACTTGTTCCATGAGTTCACAGAGTAC
CATGTGAAGCAAGTTATGGTAAAtgttacaaaaattttcaacatccaaGA
TCTTAAATCTCGTGTTGAGATCTGGCGGACAAGACATGCAATCGAAGTCT
TAAAAATTATAAACTCTGTTTTTCATGATATTGAAATAGACCAAATGGAA
CAGCTAAATCTTGAAGAGGAGCCTCTGGGGCTTGATGATGCAAGTTTTAT
GAATGATACCAGATATCAATCTGTGACAGACTCACAAGTCAATAGCTATC
TTCTTTCTGATTGCACTGATGGCAATATTTCGAAACGAACTCTTGAAGAT
GAAGACTTTTAATTTATACTTACATGTTTTGTGCACCCCTTTATCagggg
gttggtctaaaaagcagggttaGCTTGTGGGGTACCCCTTTTTTGCCCAA
ATATTTGAAGGCTAGTGCAGGCTAGTGTTTTAATTTGTTAAAATACAATG
TTAGAACCTTTAACAGAAATCTggtttaaatttaaaatccccAACATTCT
AAAACagactcaaaatgaaaatcagacCAATGGGTTATCTCATAACATCA
ATGGATAATTTACCTCATACCTATGATAACTTTAGGGATTCACACCTTGT
AGTTGTAAGGATTACATATCAAGGATACATTTATTAATTATAGGTAATCA
AAAGGTCTAAGTTCAAATAgtagaaaaaacaaattttgaccATGTTGTGT
taattcaagttaaatctttggCTACCCtcctttttagaccaacccattAT
CAGGTCAGTTATAGTTAAGGAAAGTCCAAATCATAAAGACAAATTCAATA
TTGTCATTATTGGAAATAGAGAGAT Run BLAST on NCBI transcript from alignment at scaffold_160:45497..49244+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049527 ID=TCONS_00049527|Name=TCONS_00049527|organism=Clytia hemisphaerica|type=transcript|length=3748bp|location=Sequence derived from alignment at scaffold_160:45497..49244+ (Clytia hemisphaerica)
agcGGTGGTTGTTTGTTGGACTTGGTTGCTACTTATTTTCTTGTATAGCA
TGGATGAATCAACTTTGTTGAAGAATTTGGCGTTCCAGTTTGGTATCGAA
GCTTTTCACCAGCCCCAAGTTAATGTTCTGAGGGCATTTTTTAATGGAAA
ACACACATATTTCAGTGCCCCAACAGGTTTGATTTGACAGGCAGTCATTA
TAGTAGTTTCATCTCTCCCAAAAACTCTACTTTATTTGAGACAACTTCTC
AAGATTGACCATCTAGGCTACTAGGCAGGCATCAtacttaaaaatggttt
ttgaATTATACCCATCAAAACAGCAGGGTAAAGATTCCAATTTTATCAAA
CGTACGTGTGTTTATActataataaaattaaaaaaattaagaaagctTAA
ACAAATTTAACGTAGTCataaattaaaaatcagttGTGTTATTGTCATTT
AGGCTATGGAAAGTCAGTTGTTTTCCAAGCAGTGCCGAGGTACTTTGAGG
AGTTACGTCCAGAGATTAGCAATCCAGTGCTTCTAGTATTTTCACCACTC
ATAGCCTTGATAAACGATCAGATCAAGGCTGCTGGGGATAGCTGTATCAT
GGCTATTTCCTTAGACAAGACTGTAACTGATGAGTGTTATGAAGGTATGT
CTATATTATTTAGATTTAGAATTATTTTACTTAAGATAAGTCTGGTTGTT
AGTATAGACTCTAGATTCATCAACAAAGAAGTACTCTTCTCTTAACTTAG
GGGCCTACTGTAATAAATTAATACTTCGTCCTAAATTGATATTCATATAA
GCCCTACCGTGaacatcaaatgactgaccaatcaaagcagaagaatttca
aaacaaatgaactacgcagctccattcacagctctactctacaatttttg
ttttgattttatatactttgtattttaatgaccgaccaggtcattcattt
gagggctatgcatgttatccTCCACTGATgaaagttacccgatctcacag
taACAATTAGCATGGAGTAACATGGCTTTACTTTCAGGCGACTTCAGATA
AATAACCCCTCGTTTCCTTAAACATTTTGGCAAATAACCCTCAATAACTG
TCATTTGTTTATTACACACCAAAGAGTAGAGCAATAGCAATGTACTATTA
AGTAAGCTGTCAGATAGTACAGCAgtttcattttataatatctctTAAAA
AGTTTTATCTGAATTCAATGTTGTTCCCTCCAAGATATCAAAGCTGGTAC
ATATTCATTGGTGTATGCCTGTCCAGAAGTGTTGGAGACGAAACGTTGGC
GAATGTTGTTTTCTGATTCTGAGTTTGTTGACCGTTGTATAGGAGTCGTA
GTTGATGAAGCACATGTAATGGTTGAATGGTTTGTAGATTATTTTAATCT
TTCGGAAAGGCTTTACCATGTTTTTTTCATGACATTAATGAACCACATTT
TTTTGTCTTCTAAAATTTTACAAACCTCCTGCTCTCTAACACTactaatt
ttctatttttgagtGTCTCTTCATATATTATATGTCAACTAACCAGTCGT
TACACGATTTCACTTAAAACATATTTAACAACCATAGGGGCAAGTCATCA
AATGAATCCACAAAAGCATTCAGAGAAAGCTATTCCAAGATTGTTGAGCT
GCAAAGTCTCTTGTCATCAAAAGCAAGGTTCATGTTGTTCACTGCCACTG
CAACCTCTGCTACTCAGGCCACCATCTTCTCAATGCTAAATCTTCAATCA
AACGATGTGTACTGTGAAATATATCACCCTAACAAAAATAATGTTAGGTA
ATAATTATTTAACTTTGGTATATACAAAATATTCAACTAATTTTCTGATC
TGACATTTTGTGGTTACAGTATAGTAAAATTATAGTTATGATGGATGATA
ATAGAtatttgattataaaaaattaGTAATAGCTCTCTTAGTAGATAATG
TTATTAGAAGAAATTCCTAAACTTTGTCTGTCAGGTTTCAaatcaaatct
ttaaaaagaaatttttttattcacaaGGATTTTTAGACTTCAAGAAAAAG
TACAATGATAAGGCTATCAGTATCACATCATTTTTTGTCAATAGATTCAC
AGTCGAGCAGATTTCAATGGGCAAAGAGGATGGCAGGTATCTTGTCAATT
TCTTTGACTTTATCATGGAAGAAATAATTGCCAAAAAAGAGCATACCTGC
AAAACCATTATATATGTCAACACAAGAAAGGAGGTCAACCTGTTAAATAA
TGGAATGGCCTCTAAACTCGGAGTTGATCTTTTTCTTAGTGGAAAGGAGG
GTAATCCAAGGTACCGCCTTGTTGAAGAGTTCCATGCATATAGTCCACAG
TCAGTAAAAAATCATGTCCTTGCCCAAGCTTCAATCCTTGAAAGTCATCT
ACGTGTCATCATATGCACATCAGCTTTTGGTATGGGGGTCAATGTTAAAG
GTTTTAACCGATGCATCCATTTTGGACCGCCCTCTACGGTTGAATCTTTT
GTTCAGGAGGTTGGCAGAGTTGGTAGAGATGGTTCACCAAGCGAAAGTAT
TTTGATGTTCCATAAAAGTTTGGCAACCCATGCATCGTCTGATATGGTTG
AGTATGCTGGAAGCCATGTTAAGTGTAGGCGGGATTTTTTGATGGTCAAG
TTTCCAGGGACCTACTCGTCTCTTTCTAACTGTACTTGTTGTGATCTTTG
TTCAAATGTCTGTCAATGTAAGGAACCAAATTGTTGTAAGAAATTGAAGC
AACTTAATGTGAATGCTCAAGCTCCTGTAACTGAGCGTAGAAGAAACGTA
TCAATGGCTGAAAGGGATGAACTTAGGGGGTTATTGAATGATTTCCGTAT
GGAGatcttcaataaaaagaaaaatctaaaacagGTATCATTGCCTAACT
TGTTCCATGAGTTCACAGAGTACCATGTGAAGCAAGTTATGGTAAAtgtt
acaaaaattttcaacatccaaGATCTTAAATCTCGTGTTGAGATCTGGCG
GACAAGACATGCAATCGAAGTCTTAAAAATTATAAACTCTGTTTTTCATG
ATATTGAAATAGACCAAATGGAACAGCTAAATCTTGAAGAGGAGCCTCTG
GGGCTTGATGATGCAAGTTTTATGAATGATACCAGATATCAATCTGTGAC
AGACTCACAAGTCAATAGCTATCTTCTTTCTGATTGCACTGATGGCAATA
TTTCGAAACGAACTCTTGAAGATGAAGACTTTTAATTTATACTTACATGT
TTTGTGCACCCCTTTATCagggggttggtctaaaaagcagggttaGCTTG
TGGGGTACCCCTTTTTTGCCCAAATATTTGAAGGCTAGTGCAGGCTAGTG
TTTTAATTTGTTAAAATACAATGTTAGAACCTTTAACAGAAATCTggttt
aaatttaaaatccccAACATTCTAAAACagactcaaaatgaaaatcagac
CAATGGGTTATCTCATAACATCAATGGATAATTTACCTCATACCTATGAT
AACTTTAGGGATTCACACCTTGTAGTTGTAAGGATTACATATCAAGGATA
CATTTATTAATTATAGGTAATCAAAAGGTCTAAGTTCAAATAgtagaaaa
aacaaattttgaccATGTTGTGTtaattcaagttaaatctttggCTACCC
tcctttttagaccaacccattATCAGGTCAGTTATAGTTAAGGAAAGTCC
AAATCATAAAGACAAATTCAATATTGTCATTATTGGAAATAGAGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049527-exon-scaffold_160-1491911889:45497..45672 | TCONS_00049527-exon-scaffold_160-1491911889:45497..45672 | Clytia hemisphaerica | exon |
| TCONS_00049527-exon-scaffold_160-1510915933:45497..45672 | TCONS_00049527-exon-scaffold_160-1510915933:45497..45672 | Clytia hemisphaerica | exon |
| TCONS_00049527-exon-scaffold_160-1575043694:45497..45672 | TCONS_00049527-exon-scaffold_160-1575043694:45497..45672 | Clytia hemisphaerica | exon |
| TCONS_00049527-exon-scaffold_160-1491911889:45949..47293 | TCONS_00049527-exon-scaffold_160-1491911889:45949..47293 | Clytia hemisphaerica | exon |
| TCONS_00049527-exon-scaffold_160-1510915933:45949..47293 | TCONS_00049527-exon-scaffold_160-1510915933:45949..47293 | Clytia hemisphaerica | exon |
| TCONS_00049527-exon-scaffold_160-1575043694:45949..47293 | TCONS_00049527-exon-scaffold_160-1575043694:45949..47293 | Clytia hemisphaerica | exon |
| TCONS_00049527-exon-scaffold_160-1491911889:47591..49244 | TCONS_00049527-exon-scaffold_160-1491911889:47591..49244 | Clytia hemisphaerica | exon |
| TCONS_00049527-exon-scaffold_160-1510915933:47591..49244 | TCONS_00049527-exon-scaffold_160-1510915933:47591..49244 | Clytia hemisphaerica | exon |
| TCONS_00049527-exon-scaffold_160-1575043694:47591..49244 | TCONS_00049527-exon-scaffold_160-1575043694:47591..49244 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_160 | supercontig | scaffold_160:45497..49244 + |
Blast
The following BLAST results are available for this feature:
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