|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049555 ID=TCONS_00049555|Name=TCONS_00049555|organism=Clytia hemisphaerica|type=transcript|length=1175bpRun BLAST on NCBI protein sequence of TCONS_00049555-protein >TCONS_00049555-protein ID=TCONS_00049555-protein|Name=TCONS_00049555-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp GPSNNFFVTCIFIDSSKKDHDDHHPIEFADDASENNDLQHQFAELVNGLERun BLAST on NCBI transcript from alignment at scaffold_160:225101..254331- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049555 ID=TCONS_00049555|Name=TCONS_00049555|organism=Clytia hemisphaerica|type=transcript|length=29231bp|location=Sequence derived from alignment at scaffold_160:225101..254331- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_160:225101..254331- >TCONS_00049555 ID=TCONS_00049555|Name=TCONS_00049555|organism=Clytia hemisphaerica|type=CDS|length=14076bp|location=Sequence derived from alignment at scaffold_160:225101..254331- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049555 vs. Swiss-Prot (Human)
Match: FMNL2 (Formin-like protein 2 OS=Homo sapiens GN=FMNL2 PE=1 SV=3) HSP 1 Score: 110.153 bits (274), Expect = 8.217e-26 Identity = 93/370 (25.14%), Postives = 174/370 (47.03%), Query Frame = 1
Query: 100 ENNDLQHQFAELVNGLELPDEYCDQLKAATLQQKWILLKGKE--SVREGRHSVQFYMNQLCRHLDPQLRTKSPSKKLLKGXXXXXXXXXXXXVDLRSNPNATWLREFIDEPNCGHVVLLRFLKYLQ------------------DHSSPVA---------------MANSLERANNYKNKKTDALLSR----------EPNDEHLCLLCLKAIVRNKYGFHKVLSAPRSLATMTYCLRLSNVKTKIAVLRILSEACDHGGGFDKALQAFEDYKQIKKERYRFESLVHSVILKGKQSTPTYQEVVVHFFNALLSNAPSLNQRVFHQQELEQAGFTAERVEQTLEGLSSEGIYDELSKWRNNYIDVSTTLDE 1074
E +L+ +FA ++N + LP + L+ ++KW L+ +E V+ H+ Y+ +L +LDP + KK + + +L LE+ LR+N + W+REF++E N G VL+ +L + Q D S P + + NS+ R+ + + + L SR + +D H+C++CL+AI+ +YGF+ V+S P ++ + L N +TK VL +L+ C GG + L AF+++K++ E+ RFE L+ + + + + + F N ++ + +N RV Q E + G + L+ S+ + ++ + +N DV L++
Sbjct: 27 EPGELEERFAIVLNAMNLPPDKARLLRQYDNEKKWELICDQERFQVKNPPHT---YIQKLKGYLDPAV----TRKKFRRRVQESTQVLRELEISLRTN-HIGWVREFLNEENKGLDVLVEYLSFAQYAVTFDFESVESTVESSVDKSKPWSRSIEDLHRGSNLPSPVGNSVSRSGRHSALRYNTLPSRRTLKNSRLVSKKDDVHVCIMCLRAIMNYQYGFNMVMSHPHAVNEIALSLNNKNPRTKALVLELLAAVCLVRGGHEIILSAFDNFKEVCGEKQRFEKLMEH--FRNEDNNIDFMVASMQFINIVVHSVEDMNFRVHLQYEFTKLGL--DEYLDKLKHTESDKLQVQIQAYLDNVFDVGALLED 384 The following BLAST results are available for this feature:
BLAST of TCONS_00049555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.