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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050206 ID=TCONS_00050206|Name=TCONS_00050206|organism=Clytia hemisphaerica|type=transcript|length=1840bp
ggtaaatgaaaaatcaATTGACAAATATCCATCATGTATgacaaagaatt
tttcaaagaaagtcTTGTTGCTGCTAAAGCTGTCCATGGTTTGGACTTTG
AGCTGAAGCAGGAACAAGAAGAACTATTATTTGCATTTTTAAACGGCAAA
GACTGTATAGGGGTGTTGCCAACTAATTTTGGTAAATCCATGATTTACCA
ATTAGCACCTAGTGTTCACGATGATATGGCTAGAAGAACAGACGAGATGG
TGGCAATCCTTCAAGGCGATTCAATGTTAATAGTGGTATCTCCAACCAAT
GCTTTGATTGATGACCAAATTGAAAGCTGTGAAAGACTTGGCATAACAGC
TCGGAAACTATGTTCTGAAGAAATTGATGACATAAATGAGTACGCTGGAG
AAATAACACTACTTTATTCTAGCCCCGAATGCCTACTGGAGGAGAAATTC
CGTACTTTCCTTCTCGACAAATTTCAAGAGAGAATAATTGGTATCGTAAT
AGATGAGGCACATCTTGTTGTGAAATGGGGTACTTCAAATAAACCTGATG
ACGACCCATTCCGTGAAGCATTTAAACATCTTGGACAACTTCGAGGGTAC
TTTTCTAAGCCATTTCTTTGTCTTACGGCAACAGCAAACAGAAAGACAAG
GAAAAATATCACTAAAATTTTGGGTTTGAAACGTCCCCATGTAACCAAAG
TTACACCAGAAAAACCAAATATCATGTTAAATGTCATCAAAGTAAAGTCT
ATTGAAGAATTCATGGAAACACCAATGCtcattgaaattttggaaaaatt
gagaTCACAGCCAGAGACATgtgaaaaaacaattatataTTGTCATTCGT
ATAATGCCTGTGGCTTAGTGTACTTGAAAATCAAAAGTCAATTCCCTAGA
GGATTTGATCTAACCCTTTTTGTTGAAATCTTTCATGGGACCACTCCAGT
GCCCATACAGAATGAAGTGTTAGCTGATATTGTCAAGGATGGAAGTACAA
CTAGGATTATTATTGCAACGAATGCTCTTGGTGTTGGAGTCAACAtaaaa
aacataagaaatattgTGCATTGGGGTGTTCCCTCTGATATTGAGGGTTA
TGTGCAAGAAATTGGACGTGCTGGTCGAGACCAGAAAAATAGTAAAGCTA
CCCTAATTTACAAAGGAAACGACATAACTCATTGTAGAGATAAAGACCTT
GTTAATTACATTAAAAATGTCGAAAAAGAATGTCGAAGGAAGCTTCTCAT
GTCATTTTTTAACTGTGACTATACACcatcaaaagaaaaacacctATGTT
GTGATGTCTGCTCGCAAACATGCAATTGCAATTCTTGtttctaatgtttt
ttaatttattgtCTATTACGTATACATCATTTATACATTATTGTTGTTTa
accatatttatttttctttaagtaatgattcttcaatttcaaattgaACA
CTAAGGACTAATATAAAAGTCACGCATTGACATTGAGAATCTGATTACAG
TCTCTTGAGAATAGCGAGCGAGATCCAAATTGCTTatctcaaaaaattta
attttttcaaacggTTTATCATTTATGTCTGAAGTTGTGAATAGAAGgta
gatttttcttaaaaatttttctttaacttgTTTATATAATACACCTCAAT
TTATTTTAGGCTTCCCATTTTATTAAAGGAGTAATCTATTTTTTGtaggg
ttatcctgctgtgttgcagcaATATTTGATTCAATTCAATTAAATGACTG
ATTAACTGATGATTTAATAGAAATAGGAATGCACAATGAACCTTATGACA
AAGTCAATATGGCAATGTCCTGTAAGCCAATCAAACAAGG Run BLAST on NCBI protein sequence of TCONS_00050206-protein >TCONS_00050206-protein ID=TCONS_00050206-protein|Name=TCONS_00050206-protein|organism=Clytia hemisphaerica|type=polypeptide|length=436bp
MYDKEFFKESLVAAKAVHGLDFELKQEQEELLFAFLNGKDCIGVLPTNFG
KSMIYQLAPSVHDDMARRTDEMVAILQGDSMLIVVSPTNALIDDQIESCE
RLGITARKLCSEEIDDINEYAGEITLLYSSPECLLEEKFRTFLLDKFQER
IIGIVIDEAHLVVKWGTSNKPDDDPFREAFKHLGQLRGYFSKPFLCLTAT
ANRKTRKNITKILGLKRPHVTKVTPEKPNIMLNVIKVKSIEEFMETPMLI
EILEKLRSQPETCEKTIIYCHSYNACGLVYLKIKSQFPRGFDLTLFVEIF
HGTTPVPIQNEVLADIVKDGSTTRIIIATNALGVGVNIKNIRNIVHWGVP
SDIEGYVQEIGRAGRDQKNSKATLIYKGNDITHCRDKDLVNYIKNVEKEC
RRKLLMSFFNCDYTPSKEKHLCCDVCSQTCNCNSCF Run BLAST on NCBI transcript from alignment at scaffold_168:42113..44393+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050206 ID=TCONS_00050206|Name=TCONS_00050206|organism=Clytia hemisphaerica|type=transcript|length=2281bp|location=Sequence derived from alignment at scaffold_168:42113..44393+ (Clytia hemisphaerica)
ggtaaatgaaaaatcaATTGACAAATATCCATCATGTATgacaaagaatt
tttcaaagaaagtcTTGTTGCTGCTAAAGCTGTCCATGGTTTGGACTTTG
AGCTGAAGCAGGAACAAGAAGAACTATTATTTGCATTTTTAAACGGCAAA
GACTGTATAGGGGTGTTGCCAACTAATTTTGGTAAATCCATGATTTACCA
ATTAGCACCTAGTGTTCACGATGATATGGCTAGAAGAACAGACGAGATGG
TGGCAATCCTTCAAGGCGATTCAATGTTAATAGTGGTATCTCCAACCAAT
GCTTTGATTGATGACCAAATTGAAAGCTGTGAAAGGTGATGAAAATTCTG
ATTGTTTTTATCCAGTTGATGTTTAGCTATTAGacttttttaataacttt
tagCATAAAGAATGGCTCAAGTTGGTCTCTTTGGTTCACTGTAAATTGCA
ATGtactcaaaagtttttttttaattaatcaCTAAAGTGATTTTACAAGC
TCAagtaagattttgatttttttaccaaCAGACTTGGCATAACAGCTCGG
AAACTATGTTCTGAAGAAATTGATGACATAAATGAGTACGCTGGAGAAAT
AACACTACTTTATTCTAGCCCCGAATGCCTACTGGAGGAGAAATTCCGTA
CTTTCCTTCTCGACAAATTTCAAGAGAGAATAATTGGTATCGTAATAGAT
GAGGCACATCTTGTTGTGAAATGGTAATTATCATAAATAACTTTCTGATA
ATATTCAACACAGATGTTTGATTATCTCTTTATTAAAAGaacataaaaaa
attactgTCACTACTTTTAGTGGATTGAAAtctattgaaaatttgaatca
TTGAGAGATTACAGATTTATGTTTATATGtcttaaaaaatttaattcttT
CAACACCTTTAGTGAATAAGTCTGTTCATTTTCCCCTTATGTAAATGATA
CTTATCTTTTATATATAGGGGTACTTCAAATAAACCTGATGACGACCCAT
TCCGTGAAGCATTTAAACATCTTGGACAACTTCGAGGGTACTTTTCTAAG
CCATTTCTTTGTCTTACGGCAACAGCAAACAGAAAGACAAGGAAAAATAT
CACTAAAATTTTGGGTTTGAAACGTCCCCATGTAACCAAAGTTACACCAG
AAAAACCAAATATCATGTTAAATGTCATCAAAGTAAAGTCTATTGAAGAA
TTCATGGAAACACCAATGCtcattgaaattttggaaaaattgagaTCACA
GCCAGAGACATgtgaaaaaacaattatataTTGTCATTCGTATAATGCCT
GTGGCTTAGTGTACTTGAAAATCAAAAGTCAATTCCCTAGAGGATTTGAT
CTAACCCTTTTTGTTGAAATCTTTCATGGGACCACTCCAGTGCCCATACA
GAATGAAGTGTTAGCTGATATTGTCAAGGATGGAAGTACAACTAGGATTA
TTATTGCAACGAATGCTCTTGGTGTTGGAGTCAACAtaaaaaacataaga
aatattgTGCATTGGGGTGTTCCCTCTGATATTGAGGGTTATGTGCAAGA
AATTGGACGTGCTGGTCGAGACCAGAAAAATAGTAAAGCTACCCTAATTT
ACAAAGGAAACGACATAACTCATTGTAGAGATAAAGACCTTGTTAATTAC
ATTAAAAATGTCGAAAAAGAATGTCGAAGGAAGCTTCTCATGTCATTTTT
TAACTGTGACTATACACcatcaaaagaaaaacacctATGTTGTGATGTCT
GCTCGCAAACATGCAATTGCAATTCTTGtttctaatgttttttaatttat
tgtCTATTACGTATACATCATTTATACATTATTGTTGTTTaaccatattt
atttttctttaagtaatgattcttcaatttcaaattgaACACTAAGGACT
AATATAAAAGTCACGCATTGACATTGAGAATCTGATTACAGTCTCTTGAG
AATAGCGAGCGAGATCCAAATTGCTTatctcaaaaaatttaattttttca
aacggTTTATCATTTATGTCTGAAGTTGTGAATAGAAGgtagatttttct
taaaaatttttctttaacttgTTTATATAATACACCTCAATTTATTTTAG
GCTTCCCATTTTATTAAAGGAGTAATCTATTTTTTGtagggttatcctgc
tgtgttgcagcaATATTTGATTCAATTCAATTAAATGACTGATTAACTGA
TGATTTAATAGAAATAGGAATGCACAATGAACCTTATGACAAAGTCAATA
TGGCAATGTCCTGTAAGCCAATCAAACAAGG Coding sequence (CDS) from alignment at scaffold_168:42113..44393+ >TCONS_00050206 ID=TCONS_00050206|Name=TCONS_00050206|organism=Clytia hemisphaerica|type=CDS|length=3933bp|location=Sequence derived from alignment at scaffold_168:42113..44393+ (Clytia hemisphaerica)
ATGTATgacaaagaatttttcaaagaaagtcTTGTTGCTGCTAAAGCTGT
CCATGGTTTGGACTTTGAGCTGAAGCAGGAACAAGAAGAACTATTATTTG
CATTTTTAAACGGCAAAGACTGTATAGGGGTGTTGCCAACTAATTTTGGT
AAATCCATGATTTACCAATTAGCACCTAGTGTTCACGATGATATGGCTAG
AAGAACAGACGAGATGGTGGCAATCCTTCAAGGCGATTCAATGTTAATAG
TGGTATCTCCAACCAATGCTTTGATTGATGACCAAATTGAAAGCTGTGAA
AGACTTGGCATAACAGCTCGGAAACTATGTTCTGAAGAAATTGATGACAT
AAATGAGTACGCTGGAGAAATAACACTACTTTATTCTAGCCCCGAATGCC
TACTGGAGGAGAAATTCCGTACTTTCCTTCTCGACAAATTTCAAGAGAGA
ATAATTGGTATCGTAATAGATGAGGCACATCTTGTTGTGAAATGGGGTAC
TTCAAATAAACCTGATGACGACCCATTCCGTGAAGCATTTAAACATCTTG
GACAACTTCGAGGGTACTTTTCTAAGCCATTTCTTTGTCTTACGGCAACA
GCAAACAGAAAGACAAGGAAAAATATCACTAAAATTTTGGGTTTGAAACG
TCCCCATGTAACCAAAGTTACACCAGAAAAACCAAATATCATGTTAAATG
TCATCAAAGTAAAGTCTATTGAAGAATTCATGGAAACACCAATGCtcatt
gaaattttggaaaaattgagaTCACAGCCAGAGACATgtgaaaaaacaat
tatataTTGTCATTCGTATAATGCCTGTGGCTTAGTGTACTTGAAAATCA
AAAGTCAATTCCCTAGAGGATTTGATCTAACCCTTTTTGTTGAAATCTTT
CATGGGACCACTCCAGTGCCCATACAGAATGAAGTGTTAGCTGATATTGT
CAAGGATGGAAGTACAACTAGGATTATTATTGCAACGAATGCTCTTGGTG
TTGGAGTCAACAtaaaaaacataagaaatattgTGCATTGGGGTGTTCCC
TCTGATATTGAGGGTTATGTGCAAGAAATTGGACGTGCTGGTCGAGACCA
GAAAAATAGTAAAGCTACCCTAATTTACAAAGGAAACGACATAACTCATT
GTAGAGATAAAGACCTTGTTAATTACATTAAAAATGTCGAAAAAGAATGT
CGAAGGAAGCTTCTCATGTCATTTTTTAACTGTGACTATACACcatcaaa
agaaaaacacctATGTTGTGATGTCTGCTCGCAAACATGCAATTGCAATT
CTTGtttctaaATGTATgacaaagaatttttcaaagaaagtcTTGTTGCT
GCTAAAGCTGTCCATGGTTTGGACTTTGAGCTGAAGCAGGAACAAGAAGA
ACTATTATTTGCATTTTTAAACGGCAAAGACTGTATAGGGGTGTTGCCAA
CTAATTTTGGTAAATCCATGATTTACCAATTAGCACCTAGTGTTCACGAT
GATATGGCTAGAAGAACAGACGAGATGGTGGCAATCCTTCAAGGCGATTC
AATGTTAATAGTGGTATCTCCAACCAATGCTTTGATTGATGACCAAATTG
AAAGCTGTGAAAGACTTGGCATAACAGCTCGGAAACTATGTTCTGAAGAA
ATTGATGACATAAATGAGTACGCTGGAGAAATAACACTACTTTATTCTAG
CCCCGAATGCCTACTGGAGGAGAAATTCCGTACTTTCCTTCTCGACAAAT
TTCAAGAGAGAATAATTGGTATCGTAATAGATGAGGCACATCTTGTTGTG
AAATGGGGTACTTCAAATAAACCTGATGACGACCCATTCCGTGAAGCATT
TAAACATCTTGGACAACTTCGAGGGTACTTTTCTAAGCCATTTCTTTGTC
TTACGGCAACAGCAAACAGAAAGACAAGGAAAAATATCACTAAAATTTTG
GGTTTGAAACGTCCCCATGTAACCAAAGTTACACCAGAAAAACCAAATAT
CATGTTAAATGTCATCAAAGTAAAGTCTATTGAAGAATTCATGGAAACAC
CAATGCtcattgaaattttggaaaaattgagaTCACAGCCAGAGACATgt
gaaaaaacaattatataTTGTCATTCGTATAATGCCTGTGGCTTAGTGTA
CTTGAAAATCAAAAGTCAATTCCCTAGAGGATTTGATCTAACCCTTTTTG
TTGAAATCTTTCATGGGACCACTCCAGTGCCCATACAGAATGAAGTGTTA
GCTGATATTGTCAAGGATGGAAGTACAACTAGGATTATTATTGCAACGAA
TGCTCTTGGTGTTGGAGTCAACAtaaaaaacataagaaatattgTGCATT
GGGGTGTTCCCTCTGATATTGAGGGTTATGTGCAAGAAATTGGACGTGCT
GGTCGAGACCAGAAAAATAGTAAAGCTACCCTAATTTACAAAGGAAACGA
CATAACTCATTGTAGAGATAAAGACCTTGTTAATTACATTAAAAATGTCG
AAAAAGAATGTCGAAGGAAGCTTCTCATGTCATTTTTTAACTGTGACTAT
ACACcatcaaaagaaaaacacctATGTTGTGATGTCTGCTCGCAAACATG
CAATTGCAATTCTTGtttctaaATGTATgacaaagaatttttcaaagaaa
gtcTTGTTGCTGCTAAAGCTGTCCATGGTTTGGACTTTGAGCTGAAGCAG
GAACAAGAAGAACTATTATTTGCATTTTTAAACGGCAAAGACTGTATAGG
GGTGTTGCCAACTAATTTTGGTAAATCCATGATTTACCAATTAGCACCTA
GTGTTCACGATGATATGGCTAGAAGAACAGACGAGATGGTGGCAATCCTT
CAAGGCGATTCAATGTTAATAGTGGTATCTCCAACCAATGCTTTGATTGA
TGACCAAATTGAAAGCTGTGAAAGACTTGGCATAACAGCTCGGAAACTAT
GTTCTGAAGAAATTGATGACATAAATGAGTACGCTGGAGAAATAACACTA
CTTTATTCTAGCCCCGAATGCCTACTGGAGGAGAAATTCCGTACTTTCCT
TCTCGACAAATTTCAAGAGAGAATAATTGGTATCGTAATAGATGAGGCAC
ATCTTGTTGTGAAATGGGGTACTTCAAATAAACCTGATGACGACCCATTC
CGTGAAGCATTTAAACATCTTGGACAACTTCGAGGGTACTTTTCTAAGCC
ATTTCTTTGTCTTACGGCAACAGCAAACAGAAAGACAAGGAAAAATATCA
CTAAAATTTTGGGTTTGAAACGTCCCCATGTAACCAAAGTTACACCAGAA
AAACCAAATATCATGTTAAATGTCATCAAAGTAAAGTCTATTGAAGAATT
CATGGAAACACCAATGCtcattgaaattttggaaaaattgagaTCACAGC
CAGAGACATgtgaaaaaacaattatataTTGTCATTCGTATAATGCCTGT
GGCTTAGTGTACTTGAAAATCAAAAGTCAATTCCCTAGAGGATTTGATCT
AACCCTTTTTGTTGAAATCTTTCATGGGACCACTCCAGTGCCCATACAGA
ATGAAGTGTTAGCTGATATTGTCAAGGATGGAAGTACAACTAGGATTATT
ATTGCAACGAATGCTCTTGGTGTTGGAGTCAACAtaaaaaacataagaaa
tattgTGCATTGGGGTGTTCCCTCTGATATTGAGGGTTATGTGCAAGAAA
TTGGACGTGCTGGTCGAGACCAGAAAAATAGTAAAGCTACCCTAATTTAC
AAAGGAAACGACATAACTCATTGTAGAGATAAAGACCTTGTTAATTACAT
TAAAAATGTCGAAAAAGAATGTCGAAGGAAGCTTCTCATGTCATTTTTTA
ACTGTGACTATACACcatcaaaagaaaaacacctATGTTGTGATGTCTGC
TCGCAAACATGCAATTGCAATTCTTGtttctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050206-exon-scaffold_168-1491911889:42113..42447 | TCONS_00050206-exon-scaffold_168-1491911889:42113..42447 | Clytia hemisphaerica | exon |
| TCONS_00050206-exon-scaffold_168-1510915933:42113..42447 | TCONS_00050206-exon-scaffold_168-1510915933:42113..42447 | Clytia hemisphaerica | exon |
| TCONS_00050206-exon-scaffold_168-1575043694:42113..42447 | TCONS_00050206-exon-scaffold_168-1575043694:42113..42447 | Clytia hemisphaerica | exon |
| TCONS_00050206-exon-scaffold_168-1491911889:42644..42835 | TCONS_00050206-exon-scaffold_168-1491911889:42644..42835 | Clytia hemisphaerica | exon |
| TCONS_00050206-exon-scaffold_168-1510915933:42644..42835 | TCONS_00050206-exon-scaffold_168-1510915933:42644..42835 | Clytia hemisphaerica | exon |
| TCONS_00050206-exon-scaffold_168-1575043694:42644..42835 | TCONS_00050206-exon-scaffold_168-1575043694:42644..42835 | Clytia hemisphaerica | exon |
| TCONS_00050206-exon-scaffold_168-1491911889:43081..44393 | TCONS_00050206-exon-scaffold_168-1491911889:43081..44393 | Clytia hemisphaerica | exon |
| TCONS_00050206-exon-scaffold_168-1510915933:43081..44393 | TCONS_00050206-exon-scaffold_168-1510915933:43081..44393 | Clytia hemisphaerica | exon |
| TCONS_00050206-exon-scaffold_168-1575043694:43081..44393 | TCONS_00050206-exon-scaffold_168-1575043694:43081..44393 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_168 | supercontig | scaffold_168:42113..44393 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0005524 | ATP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00050206 vs. Swiss-Prot (Human)
Match: BLM (Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 1.327e-34 Identity = 124/429 (28.90%), Postives = 194/429 (45.22%), Query Frame = 1
Query: 145 GKDCIGVLPTNFGKSMIYQLAPSVHDDMARRTDEMVAILQGDSMLIVVSPTNALIDDQIESCERLGITARKLCSEEIDD--------INEYAGEITLLYSSPECLLEEKFRTFLLDKFQER--IIGIVIDEAHLVVKWGTSNKPDDDPFREAFKHLGQLRGYF-SKPFLCLTATANRKTRKNITKILGLKRPHVTKVTPEKPNIMLNVIKVKSIEEFMETPMLIEILEKLRSQPETCEKTIIYCHSYNACGLVYLKIKSQFPRGFDLTLFVEIFHGTTPVPIQNEVLAD-IVKDGSTTRIIIATNALGVGVNIKNIRNIVHWGVPSDIEGYVQEIGRAGRDQKNSKATLIYKGNDIT--------------HCRDK------DLVNYIKNVEKECRRKLLMSF-----FNCDYTPSKEKHLCCDVCSQT 1320
G+DC ++PT GKS+ YQL V + +V+SP +LI DQ++ L I A L ++ D +++ I LLY +PE + L+ ER + VIDEAH V +WG FR+ +K + LR F S P + LTATAN + +K+I L + RP V ++ + N+ V+ K + + + LE +R + IIYC S C + ++ L +H ++EV I +DG ++I AT A G+G++ ++R ++H +P +EGY QE GRAGRD + S L Y +D+T H R+ +V+Y +N+ ECRR L+++ FN D+ K + CD C +T
Sbjct: 682 GEDCFILMPTGGGKSLCYQLPACV----------------SPGVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHD-------FRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKK------VAFDCLEWIRKH-HPYDSGIIYCLSRRECDTMADTLQRD-------GLAALAYHAGLSDSARDEVQQKWINQDG--CQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCENI-TECRRIQLLAYFGENGFNPDFC-KKHPDVSCDNCCKT 1069
The following BLAST results are available for this feature:
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