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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050266 ID=TCONS_00050266|Name=TCONS_00050266|organism=Clytia hemisphaerica|type=transcript|length=3126bpRun BLAST on NCBI protein sequence of TCONS_00050266-protein >TCONS_00050266-protein ID=TCONS_00050266-protein|Name=TCONS_00050266-protein|organism=Clytia hemisphaerica|type=polypeptide|length=514bp FIVKINKMVLADLGRKITSALKSLSNATVINEEVLNAMLKEICAALLEADRun BLAST on NCBI transcript from alignment at scaffold_168:334207..362873- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050266 ID=TCONS_00050266|Name=TCONS_00050266|organism=Clytia hemisphaerica|type=transcript|length=28667bp|location=Sequence derived from alignment at scaffold_168:334207..362873- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_168:334207..362873- >TCONS_00050266 ID=TCONS_00050266|Name=TCONS_00050266|organism=Clytia hemisphaerica|type=CDS|length=26265bp|location=Sequence derived from alignment at scaffold_168:334207..362873- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050266 vs. Swiss-Prot (Human)
Match: SRP54 (Signal recognition particle 54 kDa protein OS=Homo sapiens GN=SRP54 PE=1 SV=1) HSP 1 Score: 850.892 bits (2197), Expect = 0.000e+0 Identity = 399/470 (84.89%), Postives = 442/470 (94.04%), Query Frame = 2
Query: 23 MVLADLGRKITSALKSLSNATVINEEVLNAMLKEICAALLEADVNVQLVKKLRINIKTAANFEEMAAGTNKRRLIQHTVFQELCKLVDPGVKQWQPSKGKNNVIMFVGLQGSGKTTTCTKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNALKARIPYYGSYSEADPAIIAADGVEKFKNENFEIIIVDTSGRHKQQESLFEEMLQVSNAVDPDNIIFVMDASIGQACEAQARAFKEKVDVASVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHTDDFESFKTQPFISKLLGMGDIEGLIDKVNELKLDENEELIDKLKQGVFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSNDFISKGNEQESVARLKRLMTMMDSMNDTELDSPNGAKLFTKQPGRLTRIARGSGVSTREVQELLTQYQKFAQMVKKMGGIKGLFKGGDMAKNVNPSQMGKLNAQMAKMMDPRV 1432
MVLADLGRKITSAL+SLSNAT+INEEVLNAMLKE+C ALLEADVN++LVK+LR N+K+A + EEMA+G NKR++IQH VF+EL KLVDPGVK W P+KGK NVIMFVGLQGSGKTTTC+KLAYYYQRKGWKTCLICADTFRAGAFDQLKQNA KARIP+YGSY+E DP IIA++GVEKFKNENFEIIIVDTSGRHKQ++SLFEEMLQV+NA+ PDNI++VMDASIGQACEAQA+AFK+KVDVASVI+TKLDGHAKGGGALSAVAATKSPIIFIGTGEH DDFE FKTQPFISKLLGMGDIEGLIDKVNELKLD+NE LI+KLK G FTLRDMYEQFQNIMKMGPFSQI+GMIPGF DF+SKGNEQES+ARLK+LMT+MDSMND ELDS +GAK+F+KQPGR+ R+ARGSGVSTR+VQELLTQY KFAQMVKKMGGIKGLFKGGDM+KNV+ SQM KLN QMAKMMDPRV
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRV 470 The following BLAST results are available for this feature:
BLAST of TCONS_00050266 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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