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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050332 ID=TCONS_00050332|Name=TCONS_00050332|organism=Clytia hemisphaerica|type=transcript|length=2940bp
CGAGATTAGAAGAGGGAtatcgacattagaccaagttaagGTACCTAAAT
TAACCTGCATTAACAAATGTTaatcattttcttttcatttttagataaAC
GAATAACACAAAACACTAAAAACTAACAAAAGTAGAAAAACAACTAACAA
AGACAAACAGAACACATATATACGTCACACCCAAAAATGCCTAGCCAAGA
ATTCAACGAACGTATCTCGTCTTTCACGGCGAGCGATTTTCGTGCTGACA
CTATCACACCACTGGATGAGCTGAAAGAATTAGCACAGTCgaaaatgaaa
tataaaatgGAGCTGTTTGTGGCCCATCTTCAGCACAAAGTTTTGAGcca
actggaaaaatatgaGCCGGAGAAGAAGTTTCTTACTGATCGTTGGCAAC
GAGAACAAGGTGGCGGAGGGATTACATGTATTTTACAAGATGGAAAGGTA
TTTGAGAAAGCCGGAGTGAACATCTCAGTTGTTCATGGTAGCATGAATCC
ACAGCAAATCCAATCCATGCGTGCGCGCGGTAAAGAAATTGTAGAcggag
aaaataatttttttgcaacAGGAATTAGTTCAGTCATTCACCCAAGAAAC
CCATACATTCCAACAACTCATTTCAACTATCGGTATTTCGAACTTTTTGA
TAATGAAGGAAACACTACGTTATGGTGGTTTGGCGGTGGAACTGATTTAA
CGCCTTATTACATCAACGAAGAGGATTGCAGACATTTCCACCAAACACAG
AAAGAAGCATGTGACCAACACAGCAAAGAATATTATCCCAAATTCAAGAA
ATGGGCTGACGATtatttcttcatcaaatttcgTGGTGAGCATCGAGGTG
TTGGAGGTACCTTCTTTGATGATTTGGATGATGGTACAATGGAAGATTGT
TTCTCTTTCCTGACCACGTGTGGATATGCCATCATGCCTTCGTATCTACC
GATTGTTGATAAACACATAGATGACGAATATGGCGAGAAGCAATTACAAT
GGCAATATTTAAGGAGAGGAAGATATGTAGAATTCAACTTAGTTTACGAT
CGAGGTACCAAGTTTGGTCTTTACACACCCGGTTCACGAATTGAGAGTAT
TTTNCCTGGTTATCACTAAAACAAAAACCTTCGTCTATTTATTTTTACTA
TATTTTTAAGACCAAGGTTGAAGAAACAAGCCATCAAAGTAGGTGTTCAC
GCCCATTAGATCTTATACACACCTTTATACACGATTAATGGTATTTTATT
GAATGATACTTCTTCcagctacaatcaaggtcataatatattgagaattt
tggctattttaacgtttttcaagatttaaagttctggcgagaaagtcgat
ttttggctatctttttaatttaatNAAAACTCTCAAGGAAGTTAAAACCA
CGAGAGATTGGGTAAATTCCTGATTAGCGTAGGTACCTTATTTTTAATGC
ATAATATTTAAACGTTTGTGAAATTTTGAGACTTGCTTTCATTGCTCATT
TATGGAAATAAACAAAGTCAATGATTATTCATTGATAGTGTCGGCCGAAA
ATATTTTGGCAATCATTCTTGTGTATACTGCAAACAAATAATGATCGAGT
CTTTCCATATTATATtcttcaattcatgatattcatgacgtatgttttct
acggaaataccccggtttttgccagtagtggcaaatttaaactagccAAA
AGTTGTAAAagatttgccactactggcaaaaaccggggtctttccgtaga
aaacattacgtcatgaatatcatgaattagtaAACATTaatggaaaaatt
tttctcgaGAATTTGACTTTTTGCTGTCTCCCTGTCTTCTCTTACATTTT
CGCTTTGTTGGTGTTTGTACTTCTATTCTTCATGTTTTTGTCATTTCACA
TTTCCTTGGGCCATTgatgtacaatcatggtcgtaatattttagaaaaaa
agggaaattcccacgtattttcaaaaccacaaacgatttgaaagtgctct
aagttaggttggaagggtagagttttaactctgagtgagttttaacgcta
gagtTAAGTCTCAAGACCCTAGggtctgaggatccaaaagttcaaaaata
gtccaataaggctcagaatatagcttggaagtctataaaccagtgccaaa
ttgaaatattcgattaaattttaagagatggcccaaaatcgactttctcg
cccgagctccaaatttcgaaaaacgaggaaataagctaaattctcaatag
attttgaccatgattgtagcattTACATCTAGGTATTTAATAGATATTAT
GAGAACAATCAAACTTCCTTCGTTCCATTGTCTTCGGTAAGAACTTTgag
tattttcaaaaactaacattgggccattccattttacatccatcccagct
ggcacacaacgttttttcaacgttcatttaacgttatatggacgttgtgt
tCGTTatttaaacgttgaaacaacgttgtgtgccagctgggatacagggt
ggtggacgaacatttccagagggtaatccgaAAAAAGTTTCCAGGGgatc
gtccaccctcactttaagttatgaaaaaaacttttctaagggtatttttg
aaaattttaccattttccagggagtatccacacattttcaatatttgact
tgaaaaggttcgtccaaccccctgtatggtttttaatggaacagcccatt
taaAGCCAAGGTTGTTTATCAATTAACCCTTATGCGTAAATTCTCAGCCT
AAAAGAGAGAAGGGAGTGTATAAGGACTTATTAAAAGTCTTAGAGCTGAA
ATTAGTTGTTTGTCTGGTTATCACTAAAACAAAAACCTTCGTCTATTTAT
TTTTACTATATTTTTAAGACCAAGGTTGAAGAAACAAGCCATTAAAGTAG
GTGTTCACGCCCATTAGATCTTATACACACCTTTATACAC Run BLAST on NCBI protein sequence of TCONS_00050332-protein >TCONS_00050332-protein ID=TCONS_00050332-protein|Name=TCONS_00050332-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
MPSQEFNERISSFTASDFRADTITPLDELKELAQSKMKYKMELFVAHLQH
KVLSQLEKYEPEKKFLTDRWQREQGGGGITCILQDGKVFEKAGVNISVVH
GSMNPQQIQSMRARGKEIVDGENNFFATGISSVIHPRNPYIPTTHFNYRY
FELFDNEGNTTLWWFGGGTDLTPYYINEEDCRHFHQTQKEACDQHSKEYY
PKFKKWADDYFFIKFRGEHRGVGGTFFDDLDDGTMEDCFSFLTTCGYAIM
PSYLPIVDKHIDDEYGEKQLQWQYLRRGRYVEFNLVYDRGTKFGLYTPGS
RIESIXPGYH Run BLAST on NCBI transcript from alignment at scaffold_169:467987..474402+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050332 ID=TCONS_00050332|Name=TCONS_00050332|organism=Clytia hemisphaerica|type=transcript|length=6416bp|location=Sequence derived from alignment at scaffold_169:467987..474402+ (Clytia hemisphaerica)
CGAGATTAGAAGAGGGAtatcgacattagaccaagttaagGTACCTAAAT
TAACCTGCATTAACAAATGTTaatcattttcttttcatttttagataaAC
GAATAACACAAAACACTAAAAACTAACAAAAGTAGAAAAACAACTAACAA
AGACAAACAGAACACATATATACGTCACACCCAAAAATGCCTAGCCAAGA
ATTCAACGAACGTATCTCGTCTTTCACGGCGAGCGATTTTCGTGCTGACA
CTATCACACCACTGGATGAGCTGAAAGAATTAGCACAGTCgaaaatgaaa
tataaaatgGAGCTGTTTGTGGCCCATCTTCAGCACAAAGTTTTGAGcca
actggaaaaatatgaGCCGGAGAAGAAGTTTCTTACTGATCGTTGGCAAC
GAGAACAAGGTGGCGGAGGGATTACATGTATTTTACAAGATGGTATAACT
ATTATATCTTTCTTCCTTATTCTTATCAAGAAAAGTTATCTTTCAATCCA
TCAAACactttcattttttgttgtACATCTTTTTCGTTTTTAGGAAAGGT
ATTTGAGAAAGCCGGAGTGAACATCTCAGTTGTTCATGGTAGCATGAATC
CACAGCAAATCCAATCCATGCGTGCGCGCGGTAAAGAAATTGTAGAcgga
gaaaataatttttttgcaacAGGTAAGAATTCATTCAAAATCATTTGAAA
TCATGACTTTTGCAACAGATCGAGTACCTTTTTGAGGGTTTTTGAAAGAT
ATTCTGACTATGTAACTAAAGTATACaacatctatatattaatacgctta
aacgtgtgtgtttacaacgttttgtaaaaagttttcgaaaatctaacaaa
gctctacaaagcctcctcttcatggcgttgaaccatcatctctTTGCATc
ttaagcagatttcctaccactagactaactttgagaccccaagatactat
tttctattcaccaagtttggaatttcctaaaatcaaaatcaaatcatcaa
tcggcggctatctttcttccgttagaattttttagatgtatagtgattca
ctggattgggacacgcagcgtgcgacgctgcgcatacggctagtatTATA
TAAtcataaaatttcttttctttttatcattatAGGAATTAGTTCAGTCA
TTCACCCAAGAAACCCATACATTCCAACAACTCATTTCAACTATCGGTAT
TTCGAACTTTTTGATAATGAAGGAAACACTACGTTATGGTGGTTTGGCGG
TGGAACTGATTTAACGCCTTATTACATCAACGAAGAGGTTGGTTACGCAA
TCCTTTATACACTCATGTGTCAAGGACACGGCGAGACCCcctacccactg
gaaaattagtCTAAAATTTCGTCcgcgttggaaagatattctagaatttc
agtcccactggaaaactgactttatttttatctctatttgaaagaatttc
tatccccatttggatttcaatagagattttcatccccactggggctgtga
gacagttGTGGGCGTTTCTCCGTccaaaatgattttattttgttcagTTT
CTACCAATATTTTGGCCAGGAGGATAGTTATGGTTTATGTTATGGGTTAC
CAACCCGGTAATCAGTGATTTTGCCAGAAATTAAATCATACTTGGCTCAT
AATGAAGAGGgaaattttcttagaaaatacattttttgtcATTCACCTAG
CTAAGGTAGTTTCTGAAAAGCTTACATAATTAAAGTAATTATAGTAAGGT
TTTGTAAGGTTGTGGGTACTTGTTAACAAATAGTACTTGATGACTCTGAT
ACCAAGCAATCAAAGAGAAGGgtgcgtggattaattttcgcgactTTCGT
GAATTTTCGCGACTTTCgtgaattttggcccttttcgcgaaaattagtcc
tCGCGGAATATTCAAAATCAAGCCGAAACctttaggaaaatgaaagaaat
tgggTGAAAAAGTGtccgattcgcgaaattttgtccacgcgacAATTTTG
GATTATCAATTAACGAAAAAAAggccacgcgaaaatttatccacttaagg
tatttttCTTGTTATAAATGAaccattatttttctttgtttttctgtaGG
ATTGCAGACATTTCCACCAAACACAGAAAGAAGCATGTGACCAACACAGC
AAAGAATATTATCCCAAATTCAAGAAATGGGCTGACGATtatttcttcat
caaatttcgTGGTAAGTGAAAAAAGATACTATAATTATACTCTATACCCT
CAAAAGGGTagataccttaagtggataaattttttcgaaaaaattcgaca
aattaaatcctcgccaaaatttcaaaatccggcaattcaccaaaataaat
ccccgccaaaattaaaggaaaatcatgtttttttatcgagaaatttcaga
aaactaTTTTTGCCTTTTATAAACCGATCGTGTATTTACctagacaggag
aaccgtcgtgtttttttttataatttgatgtacacaagacgggttcgagc
tgtgagtccaatattggactcacatttttttacagtaggaaattcgaatt
tagcgctgtcctcacttactaaaataaaaaccaaatttcgaaagttgcgc
tttctctaagaaagtgtgaccagtaaNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNttaggatctgagaaattcaaact
ctcagcccataccatgctatacatttcgccatcagtttatcaaagaagaa
atcatagcatggattcccaggctagtatTAACCATATACATTTTAACAAA
CTATTTTTACCTTTATAACCGGTCTTATACacgtattattttttctattc
tgagctttttacatagttataattcagcagattgaaataaatagaatctt
ttgtaatgaataaagaaaaatgtggagcaagatttttttcttccttttat
ttacacatttgaaaggactcttttattaaaatttcgctgacatcagtttc
agacgagtcgggtgtatataacaccgtataattcctttaataaaaaacac
tttctttgtctttcgccaaaattatatccccgccaaattttcaaaaattg
tccattcgccaaattaaatcctcgccaaattttacaaaattgagcattcg
ccaaattaaatccccgccgaAAATCACATTTtggtcattcgccaaattaa
atccacgccaaaatttatccacttaataCATAAACTCGTTATTTTTCGGT
GAGTTTGTCCGTACTGGGGGTTGAAACCCTATGTCTTTTTCGTCAAAATT
CTCGCGTCCCTTTTAATGTTCATGTAGCTTTTTACTAAAAATTGTTCTCT
ATTGGTTTCAAGTGGCATTGAGAGTTCGATAAAGCTATAAAATATGTCCC
CTATGGAATATTTTCAGGTGAGCATCGAGGTGTTGGAGGTACCTTCTTTG
ATGATTTGGATGATGGTACAATGGAAGATTGTTTCTCTTTCCTGACCACG
TGTGGATATGCCATCATGCCTTCGTATCTACCGATTGTTGATAAACACAT
AGATGACGAATATGGCGAGAAGCAATTACAATGGCAATATTTAAGGAGAG
GAAGGTcagttttatcattttcatcaaacttTTCTTATTGAATTCTTTCA
GATTTTGGTAGGTTAGACGATCAACatattttgtaaacattttttgttat
tttgaagaGGTTATGTAAATTTACTGTATACTCCATAAGAGCAAAGAGTA
AATAATCTGCTGTAGAATACTACTTTGATCAGTGGTGATAAAAACATAAC
TacaattgacgctctctaattcaatcttCATTGGAGCATATCAAATAGTA
GAGCTTCGTTTACAAGGGTTTCTTGTtaacggtgactttcaatattatcg
aataatggagtgtattgaaaataaaacgtcgaattagagagcgtcaactg
tagtttcAAAAAGTAACATTTTCGTCGCAAAATGTTATCAACTTTCTTCG
TAAAGATAAAAAATCATACCTAAAACACTAAACTGAGAAAGGAAACGTAA
AACCCCGAAATTCTGCTatcaatacacaggttgcaaaattaaagtctaaa
GACAAACCACGTTTTGACTTATTacaaatttttatgtgcttgttacatga
catttatttctgactggttcgattttattaacactaataaagttatcagc
tgtaacttgtaaagcaagtaacatggtaataaaatcacgtgaactttttc
gagtaatcacatgttttgactgcattgatataattttccAACCCGTGTAT
TGCCTTTGAATAaacatttaatttaatttatttgttGTTTGATTTCAGAT
ATGTAGAATTCAACTTAGTTTACGATCGAGGTACCAAGTTTGGTCTTTAC
ACACCCGGTTCACGAATTGAGAGTATTTTNCCTGGTTATCACTAAAACAA
AAACCTTCGTCTATTTATTTTTACTATATTTTTAAGACCAAGGTTGAAGA
AACAAGCCATCAAAGTAGGTGTTCACGCCCATTAGATCTTATACACACCT
TTATACACGATTAATGGTATTTTATTGAATGATACTTCTTCcagctacaa
tcaaggtcataatatattgagaattttggctattttaacgtttttcaaga
tttaaagttctggcgagaaagtcgatttttggctatctttttaatttaat
NAAAACTCTCAAGGAAGTTAAAACCACGAGAGATTGGGTAAATTCCTGAT
TAGCGTAGGTACCTTATTTTTAATGCATAATATTTAAACGTTTGTGAAAT
TTTGAGACTTGCTTTCATTGCTCATTTATGGAAATAAACAAAGTCAATGA
TTATTCATTGATAGTGTCGGCCGAAAATATTTTGGCAATCATTCTTGTGT
ATACTGCAAACAAATAATGATCGAGTCTTTCCATATTATATtcttcaatt
catgatattcatgacgtatgttttctacggaaataccccggtttttgcca
gtagtggcaaatttaaactagccAAAAGTTGTAAAagatttgccactact
ggcaaaaaccggggtctttccgtagaaaacattacgtcatgaatatcatg
aattagtaAACATTaatggaaaaatttttctcgaGAATTTGACTTTTTGC
TGTCTCCCTGTCTTCTCTTACATTTTCGCTTTGTTGGTGTTTGTACTTCT
ATTCTTCATGTTTTTGTCATTTCACATTTCCTTGGGCCATTgatgtacaa
tcatggtcgtaatattttagaaaaaaagggaaattcccacgtattttcaa
aaccacaaacgatttgaaagtgctctaagttaggttggaagggtagagtt
ttaactctgagtgagttttaacgctagagtTAAGTCTCAAGACCCTAGgg
tctgaggatccaaaagttcaaaaatagtccaataaggctcagaatatagc
ttggaagtctataaaccagtgccaaattgaaatattcgattaaattttaa
gagatggcccaaaatcgactttctcgcccgagctccaaatttcgaaaaac
gaggaaataagctaaattctcaatagattttgaccatgattgtagcattT
ACATCTAGGTATTTAATAGATATTATGAGAACAATCAAACTTCCTTCGTT
CCATTGTCTTCGGTAAGAACTTTgagtattttcaaaaactaacattgggc
cattccattttacatccatcccagctggcacacaacgttttttcaacgtt
catttaacgttatatggacgttgtgttCGTTatttaaacgttgaaacaac
gttgtgtgccagctgggatacagggtggtggacgaacatttccagagggt
aatccgaAAAAAGTTTCCAGGGgatcgtccaccctcactttaagttatga
aaaaaacttttctaagggtatttttgaaaattttaccattttccagggag
tatccacacattttcaatatttgacttgaaaaggttcgtccaaccccctg
tatggtttttaatggaacagcccatttaaAGCCAAGGTTGTTTATCAATT
AACCCTTATGCGTAAATTCTCAGCCTAAAAGAGAGAAGGGAGTGTATAAG
GACTTATTAAAAGTCTTAGAGCTGAAATTAGTTGTTTGTCTGGTTATCAC
TAAAACAAAAACCTTCGTCTATTTATTTTTACTATATTTTTAAGACCAAG
GTTGAAGAAACAAGCCATTAAAGTAGGTGTTCACGCCCATTAGATCTTAT
ACACACCTTTATACAC Coding sequence (CDS) from alignment at scaffold_169:467987..474402+ >TCONS_00050332 ID=TCONS_00050332|Name=TCONS_00050332|organism=Clytia hemisphaerica|type=CDS|length=5598bp|location=Sequence derived from alignment at scaffold_169:467987..474402+ (Clytia hemisphaerica)
ATGCCTAGCCAAGAATTCAACGAACGTATCTCGTCTTTCACGGCGAGCGA
TTTTCGTGCTGACACTATCACACCACTGGATGAGCTGAAAGAATTAGCAC
AGTCgaaaatgaaatataaaatgGAGCTGTTTGTGGCCCATCTTCAGCAC
AAAGTTTTGAGccaactggaaaaatatgaGCCGGAGAAGAAGTTTCTTAC
TGATCGTTGGCAACGAGAACAAGGTGGCGGAGGGATTACATGTATTTTAC
AAGATGGAAAGGTATTTGAGAAAGCCGGAGTGAACATCTCAGTTGTTCAT
GGTAGCATGAATCCACAGCAAATCCAATCCATGCGTGCGCGCGGTAAAGA
AATTGTAGAcggagaaaataatttttttgcaacAGGAATTAGTTCAGTCA
TTCACCCAAGAAACCCATACATTCCAACAACTCATTTCAACTATCGGTAT
TTCGAACTTTTTGATAATGAAGGAAACACTACGTTATGGTGGTTTGGCGG
TGGAACTGATTTAACGCCTTATTACATCAACGAAGAGGATTGCAGACATT
TCCACCAAACACAGAAAGAAGCATGTGACCAACACAGCAAAGAATATTAT
CCCAAATTCAAGAAATGGGCTGACGATtatttcttcatcaaatttcgTGG
TGAGCATCGAGGTGTTGGAGGTACCTTCTTTGATGATTTGGATGATGGTA
CAATGGAAGATTGTTTCTCTTTCCTGACCACGTGTGGATATGCCATCATG
CCTTCGTATCTACCGATTGTTGATAAACACATAGATGACGAATATGGCGA
GAAGCAATTACAATGGCAATATTTAAGGAGAGGAAGATATGTAGAATTCA
ACTTAGTTTACGATCGAGGTACCAAGTTTGGTCTTTACACACCCGGTTCA
CGAATTGAGAGTATTTTNCCTGGTTATCACTAAATGCCTAGCCAAGAATT
CAACGAACGTATCTCGTCTTTCACGGCGAGCGATTTTCGTGCTGACACTA
TCACACCACTGGATGAGCTGAAAGAATTAGCACAGTCgaaaatgaaatat
aaaatgGAGCTGTTTGTGGCCCATCTTCAGCACAAAGTTTTGAGccaact
ggaaaaatatgaGCCGGAGAAGAAGTTTCTTACTGATCGTTGGCAACGAG
AACAAGGTGGCGGAGGGATTACATGTATTTTACAAGATGGAAAGGTATTT
GAGAAAGCCGGAGTGAACATCTCAGTTGTTCATGGTAGCATGAATCCACA
GCAAATCCAATCCATGCGTGCGCGCGGTAAAGAAATTGTAGAcggagaaa
ataatttttttgcaacAGGAATTAGTTCAGTCATTCACCCAAGAAACCCA
TACATTCCAACAACTCATTTCAACTATCGGTATTTCGAACTTTTTGATAA
TGAAGGAAACACTACGTTATGGTGGTTTGGCGGTGGAACTGATTTAACGC
CTTATTACATCAACGAAGAGGATTGCAGACATTTCCACCAAACACAGAAA
GAAGCATGTGACCAACACAGCAAAGAATATTATCCCAAATTCAAGAAATG
GGCTGACGATtatttcttcatcaaatttcgTGGTGAGCATCGAGGTGTTG
GAGGTACCTTCTTTGATGATTTGGATGATGGTACAATGGAAGATTGTTTC
TCTTTCCTGACCACGTGTGGATATGCCATCATGCCTTCGTATCTACCGAT
TGTTGATAAACACATAGATGACGAATATGGCGAGAAGCAATTACAATGGC
AATATTTAAGGAGAGGAAGATATGTAGAATTCAACTTAGTTTACGATCGA
GGTACCAAGTTTGGTCTTTACACACCCGGTTCACGAATTGAGAGTATTTT
NCCTGGTTATCACTAAATGCCTAGCCAAGAATTCAACGAACGTATCTCGT
CTTTCACGGCGAGCGATTTTCGTGCTGACACTATCACACCACTGGATGAG
CTGAAAGAATTAGCACAGTCgaaaatgaaatataaaatgGAGCTGTTTGT
GGCCCATCTTCAGCACAAAGTTTTGAGccaactggaaaaatatgaGCCGG
AGAAGAAGTTTCTTACTGATCGTTGGCAACGAGAACAAGGTGGCGGAGGG
ATTACATGTATTTTACAAGATGGAAAGGTATTTGAGAAAGCCGGAGTGAA
CATCTCAGTTGTTCATGGTAGCATGAATCCACAGCAAATCCAATCCATGC
GTGCGCGCGGTAAAGAAATTGTAGAcggagaaaataatttttttgcaacA
GGAATTAGTTCAGTCATTCACCCAAGAAACCCATACATTCCAACAACTCA
TTTCAACTATCGGTATTTCGAACTTTTTGATAATGAAGGAAACACTACGT
TATGGTGGTTTGGCGGTGGAACTGATTTAACGCCTTATTACATCAACGAA
GAGGATTGCAGACATTTCCACCAAACACAGAAAGAAGCATGTGACCAACA
CAGCAAAGAATATTATCCCAAATTCAAGAAATGGGCTGACGATtatttct
tcatcaaatttcgTGGTGAGCATCGAGGTGTTGGAGGTACCTTCTTTGAT
GATTTGGATGATGGTACAATGGAAGATTGTTTCTCTTTCCTGACCACGTG
TGGATATGCCATCATGCCTTCGTATCTACCGATTGTTGATAAACACATAG
ATGACGAATATGGCGAGAAGCAATTACAATGGCAATATTTAAGGAGAGGA
AGATATGTAGAATTCAACTTAGTTTACGATCGAGGTACCAAGTTTGGTCT
TTACACACCCGGTTCACGAATTGAGAGTATTTTNCCTGGTTATCACTAAA
TGCCTAGCCAAGAATTCAACGAACGTATCTCGTCTTTCACGGCGAGCGAT
TTTCGTGCTGACACTATCACACCACTGGATGAGCTGAAAGAATTAGCACA
GTCgaaaatgaaatataaaatgGAGCTGTTTGTGGCCCATCTTCAGCACA
AAGTTTTGAGccaactggaaaaatatgaGCCGGAGAAGAAGTTTCTTACT
GATCGTTGGCAACGAGAACAAGGTGGCGGAGGGATTACATGTATTTTACA
AGATGGAAAGGTATTTGAGAAAGCCGGAGTGAACATCTCAGTTGTTCATG
GTAGCATGAATCCACAGCAAATCCAATCCATGCGTGCGCGCGGTAAAGAA
ATTGTAGAcggagaaaataatttttttgcaacAGGAATTAGTTCAGTCAT
TCACCCAAGAAACCCATACATTCCAACAACTCATTTCAACTATCGGTATT
TCGAACTTTTTGATAATGAAGGAAACACTACGTTATGGTGGTTTGGCGGT
GGAACTGATTTAACGCCTTATTACATCAACGAAGAGGATTGCAGACATTT
CCACCAAACACAGAAAGAAGCATGTGACCAACACAGCAAAGAATATTATC
CCAAATTCAAGAAATGGGCTGACGATtatttcttcatcaaatttcgTGGT
GAGCATCGAGGTGTTGGAGGTACCTTCTTTGATGATTTGGATGATGGTAC
AATGGAAGATTGTTTCTCTTTCCTGACCACGTGTGGATATGCCATCATGC
CTTCGTATCTACCGATTGTTGATAAACACATAGATGACGAATATGGCGAG
AAGCAATTACAATGGCAATATTTAAGGAGAGGAAGATATGTAGAATTCAA
CTTAGTTTACGATCGAGGTACCAAGTTTGGTCTTTACACACCCGGTTCAC
GAATTGAGAGTATTTTNCCTGGTTATCACTAAATGCCTAGCCAAGAATTC
AACGAACGTATCTCGTCTTTCACGGCGAGCGATTTTCGTGCTGACACTAT
CACACCACTGGATGAGCTGAAAGAATTAGCACAGTCgaaaatgaaatata
aaatgGAGCTGTTTGTGGCCCATCTTCAGCACAAAGTTTTGAGccaactg
gaaaaatatgaGCCGGAGAAGAAGTTTCTTACTGATCGTTGGCAACGAGA
ACAAGGTGGCGGAGGGATTACATGTATTTTACAAGATGGAAAGGTATTTG
AGAAAGCCGGAGTGAACATCTCAGTTGTTCATGGTAGCATGAATCCACAG
CAAATCCAATCCATGCGTGCGCGCGGTAAAGAAATTGTAGAcggagaaaa
taatttttttgcaacAGGAATTAGTTCAGTCATTCACCCAAGAAACCCAT
ACATTCCAACAACTCATTTCAACTATCGGTATTTCGAACTTTTTGATAAT
GAAGGAAACACTACGTTATGGTGGTTTGGCGGTGGAACTGATTTAACGCC
TTATTACATCAACGAAGAGGATTGCAGACATTTCCACCAAACACAGAAAG
AAGCATGTGACCAACACAGCAAAGAATATTATCCCAAATTCAAGAAATGG
GCTGACGATtatttcttcatcaaatttcgTGGTGAGCATCGAGGTGTTGG
AGGTACCTTCTTTGATGATTTGGATGATGGTACAATGGAAGATTGTTTCT
CTTTCCTGACCACGTGTGGATATGCCATCATGCCTTCGTATCTACCGATT
GTTGATAAACACATAGATGACGAATATGGCGAGAAGCAATTACAATGGCA
ATATTTAAGGAGAGGAAGATATGTAGAATTCAACTTAGTTTACGATCGAG
GTACCAAGTTTGGTCTTTACACACCCGGTTCACGAATTGAGAGTATTTTN
CCTGGTTATCACTAAATGCCTAGCCAAGAATTCAACGAACGTATCTCGTC
TTTCACGGCGAGCGATTTTCGTGCTGACACTATCACACCACTGGATGAGC
TGAAAGAATTAGCACAGTCgaaaatgaaatataaaatgGAGCTGTTTGTG
GCCCATCTTCAGCACAAAGTTTTGAGccaactggaaaaatatgaGCCGGA
GAAGAAGTTTCTTACTGATCGTTGGCAACGAGAACAAGGTGGCGGAGGGA
TTACATGTATTTTACAAGATGGAAAGGTATTTGAGAAAGCCGGAGTGAAC
ATCTCAGTTGTTCATGGTAGCATGAATCCACAGCAAATCCAATCCATGCG
TGCGCGCGGTAAAGAAATTGTAGAcggagaaaataatttttttgcaacAG
GAATTAGTTCAGTCATTCACCCAAGAAACCCATACATTCCAACAACTCAT
TTCAACTATCGGTATTTCGAACTTTTTGATAATGAAGGAAACACTACGTT
ATGGTGGTTTGGCGGTGGAACTGATTTAACGCCTTATTACATCAACGAAG
AGGATTGCAGACATTTCCACCAAACACAGAAAGAAGCATGTGACCAACAC
AGCAAAGAATATTATCCCAAATTCAAGAAATGGGCTGACGATtatttctt
catcaaatttcgTGGTGAGCATCGAGGTGTTGGAGGTACCTTCTTTGATG
ATTTGGATGATGGTACAATGGAAGATTGTTTCTCTTTCCTGACCACGTGT
GGATATGCCATCATGCCTTCGTATCTACCGATTGTTGATAAACACATAGA
TGACGAATATGGCGAGAAGCAATTACAATGGCAATATTTAAGGAGAGGAA
GATATGTAGAATTCAACTTAGTTTACGATCGAGGTACCAAGTTTGGTCTT
TACACACCCGGTTCACGAATTGAGAGTATTTTNCCTGGTTATCACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050332-exon-scaffold_169-1491911889:467987..468428 | TCONS_00050332-exon-scaffold_169-1491911889:467987..468428 | Clytia hemisphaerica | exon |
| TCONS_00050332-exon-scaffold_169-1510915933:467987..468428 | TCONS_00050332-exon-scaffold_169-1510915933:467987..468428 | Clytia hemisphaerica | exon |
| TCONS_00050332-exon-scaffold_169-1575043694:467987..468428 | TCONS_00050332-exon-scaffold_169-1575043694:467987..468428 | Clytia hemisphaerica | exon |
| TCONS_00050332-exon-scaffold_169-1491911889:468530..468658 | TCONS_00050332-exon-scaffold_169-1491911889:468530..468658 | Clytia hemisphaerica | exon |
| TCONS_00050332-exon-scaffold_169-1510915933:468530..468658 | TCONS_00050332-exon-scaffold_169-1510915933:468530..468658 | Clytia hemisphaerica | exon |
| TCONS_00050332-exon-scaffold_169-1575043694:468530..468658 | TCONS_00050332-exon-scaffold_169-1575043694:468530..468658 | Clytia hemisphaerica | exon |
| TCONS_00050332-exon-scaffold_169-1491911889:469122..469273 | TCONS_00050332-exon-scaffold_169-1491911889:469122..469273 | Clytia hemisphaerica | exon |
| TCONS_00050332-exon-scaffold_169-1510915933:469122..469273 | TCONS_00050332-exon-scaffold_169-1510915933:469122..469273 | Clytia hemisphaerica | exon |
| TCONS_00050332-exon-scaffold_169-1575043694:469122..469273 | TCONS_00050332-exon-scaffold_169-1575043694:469122..469273 | Clytia hemisphaerica | exon |
| TCONS_00050332-exon-scaffold_169-1491911889:470086..470197 | TCONS_00050332-exon-scaffold_169-1491911889:470086..470197 | Clytia hemisphaerica | exon |
| TCONS_00050332-exon-scaffold_169-1510915933:470086..470197 | TCONS_00050332-exon-scaffold_169-1510915933:470086..470197 | Clytia hemisphaerica | exon |
| TCONS_00050332-exon-scaffold_169-1575043694:470086..470197 | TCONS_00050332-exon-scaffold_169-1575043694:470086..470197 | Clytia hemisphaerica | exon |
| TCONS_00050332-exon-scaffold_169-1491911889:471554..471740 | TCONS_00050332-exon-scaffold_169-1491911889:471554..471740 | Clytia hemisphaerica | exon |
| TCONS_00050332-exon-scaffold_169-1510915933:471554..471740 | TCONS_00050332-exon-scaffold_169-1510915933:471554..471740 | Clytia hemisphaerica | exon |
| TCONS_00050332-exon-scaffold_169-1575043694:471554..471740 | TCONS_00050332-exon-scaffold_169-1575043694:471554..471740 | Clytia hemisphaerica | exon |
| TCONS_00050332-exon-scaffold_169-1491911889:472485..474402 | TCONS_00050332-exon-scaffold_169-1491911889:472485..474402 | Clytia hemisphaerica | exon |
| TCONS_00050332-exon-scaffold_169-1510915933:472485..474402 | TCONS_00050332-exon-scaffold_169-1510915933:472485..474402 | Clytia hemisphaerica | exon |
| TCONS_00050332-exon-scaffold_169-1575043694:472485..474402 | TCONS_00050332-exon-scaffold_169-1575043694:472485..474402 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_169 | supercontig | scaffold_169:467987..474402 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001260 | Coprogen_oxidase_aer |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004109 | coproporphyrinogen oxidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006779 | porphyrin-containing compound biosynthetic process |
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| biological_process |
GO:0006779 |
porphyrin-containing compound biosynthetic process |
| molecular_function |
GO:0004109 |
coproporphyrinogen oxidase activity |
Blast
BLAST of TCONS_00050332 vs. Swiss-Prot (Human)
Match: HEM6 (Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial OS=Homo sapiens GN=CPOX PE=1 SV=3) HSP 1 Score: 337.806 bits (865), Expect = 7.857e-105 Identity = 175/317 (55.21%), Postives = 220/317 (69.40%), Query Frame = 1
Query: 157 TEHIYTSHPKMPSQEFNERISSFTASDFRADTITPLDELKELAQSKMKYKMELFVAHLQHKVLSQLEKYEPEKKFLTDRWQREQGGGGITCILQDGKVFEKAGVNISVVHGSMNPQQIQSMRARGK--EIVDGENNFFATGISSVIHPRNPYIPTTHFNYRYFELFDNEGNTTLWWFGGGTDLTPYYINEEDCRHFHQTQKEACDQHSKEYYPKFKKWADDYFFIKFRGEHRXXXXXXXXXXXXXXMEDCFSFLTTCGYAIMPSYLPIVDKHIDDEYGEKQLQWQYLRRGRYVEFNLVYDRGTKFGLYTPGSRIESI 1101
T P+ E R SSF A +T L EL+ MK KMEL + Q +V L + + F DRW+R++GGGGI+C+LQDG VFEKAGV+ISVVHG+++ + + MR+RGK + DG+ F A G+SSVIHP+NP+ PT HFNYRYFE+ + +GN WWFGGG DLTP Y+N+ED HFH+T KEACDQH + YPKFKKW DDYFFI RGE RG+GG FFDDLD + E+ F F+ +C A++PSY+P+V KH DD + ++ WQ LRRGRYVEFNL+YDRGTKFGL+TPGSRIESI
Sbjct: 108 TRATSLGRPEEEEDELAHRCSSFMAP-----PVTDLGELRRRP-GDMKTKMELLILETQAQVCQALAQVDGGANFSVDRWERKEGGGGISCVLQDGCVFEKAGVSISVVHGNLSEEAAKQMRSRGKVLKTKDGKLPFCAMGVSSVIHPKNPHAPTIHFNYRYFEVEEADGNKQ-WWFGGGCDLTPTYLNQEDAVHFHRTLKEACDQHGPDLYPKFKKWCDDYFFIAHRGERRGIGGIFFDDLDSPSKEEVFRFVQSCARAVVPSYIPLVKKHCDDSFTPQEKLWQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESI 417
The following BLAST results are available for this feature:
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