TCONS_00050339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050339
Unique NameTCONS_00050339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050339 ID=TCONS_00050339|Name=TCONS_00050339|organism=Clytia hemisphaerica|type=transcript|length=807bp
ATTGTCATAACCTTAAAAAGTGTccgttgaaaaaaaattattctattTTT
CAGACTAAAATAACAGTAAAAATGGCAAACCGACCAAAAGGATTTGGAAT
GACCGCTGAATTGAATCGAAAAAAGGAAGCCAAATTCGATCCAGACCTCG
CAACTGATTGTTTCCAATGGCTAAAAGAGGTTTTAAATGATGGCGGTAAA
GCAGATTTAGCTGCATCCTTACCCTCGgTAATTGGGAAATCAGCCGATGT
TATTTCGCCATTGAAAAACGGAAAAATCCTTTGCGAAGTTATCAATGTTA
TAAAACCAGGAAGTGTGAAAAAGATCAACGAGAACAAAATGACCTTcaaa
gaaatggaaaatatTGGTAACTTTTTGGCTGCTTGCGAAAAAATCGGTTG
TGTCAAAAACGACCTTTTCCAAACTGTTGATTTGTATGAAGGACAAAATA
TTAACCAGGTTATCAACGGAATCGTATCATTGGGTCGCAAAGCCCAGACC
ATCGGCTACAACGGGCCATGTCTCGGCCCCACAGAGTCAACAGAAAACAA
ACGAGAATTTACTGATGAGCAACTTAAAGCCGGAGAGGGCATCATTGGAC
TTCAAATGGaaaaattttgttaataATATGTATTTTACGGAATGGACCAA
AGAATtgcaataaattttgaatttctaccgattttaaagttttttttcca
attAACAAGAGGTTATTATCATTTGTTGTAAAACTTCGTTTAAGATTCCA
GAAATCAAACTATTTAATTTAAGCCAAAATCAAACCATTTTAGACATTTC
AAAGATT
Run BLAST on NCBI

protein sequence of TCONS_00050339-protein

>TCONS_00050339-protein ID=TCONS_00050339-protein|Name=TCONS_00050339-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
CHNLKKCPLKKNYSIFQTKITVKMANRPKGFGMTAELNRKKEAKFDPDLA
TDCFQWLKEVLNDGGKADLAASLPSVIGKSADVISPLKNGKILCEVINVI
KPGSVKKINENKMTFKEMENIGNFLAACEKIGCVKNDLFQTVDLYEGQNI
NQVINGIVSLGRKAQTIGYNGPCLGPTESTENKREFTDEQLKAGEGIIGL
QMEKFC
Run BLAST on NCBI

transcript from alignment at scaffold_169:143383..144993-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050339 ID=TCONS_00050339|Name=TCONS_00050339|organism=Clytia hemisphaerica|type=transcript|length=1611bp|location=Sequence derived from alignment at scaffold_169:143383..144993- (Clytia hemisphaerica)
ATTGTCATAACCTTAAAAAGTGTCCGTTGAAAAAAAATTATTCTATTTTT
CAGACTAAAATAACAGTAAAAATGGCAAACCGACCAAAAGGATTTGGAAT
GACCGCTGAATTGAATCGAAAAAAGGAAGCCAAATTCGATCCAGACCTCG
CAACTGATTGTTTCCAATGGCTAAAAGAGGTTTTAAATGATGGCGGTAAA
GCAGATTTAGCTGCATCCTTACCCTCGGTATGTACACTTGGCATGAGGGC
GGAGCCTTGTAATAAAATTTTAGCCAAAAAATGCTAGAAAAGAATCTTCA
ACCTCTGCAGACATGAAATACTTAGACCATGAGATTCGCGCCATATTTCT
GACAGCGGGGTTGTCTTTTGAGCGATATTTTTCGGCAGAAATTTCAAGTT
AACGATAAAATTTGAGAGGGACCCACTCTTTTGAGCGTTTAAAGTAACAT
CAAAAATGGTCATACATTTAATGAGTTAGTTTTGTTTGTTTTAAAGGTAA
TTGGGAAATCAGCCGATGTTATTTCGCCATTGAAAAACGGAAAAATCCTT
TGCGAAGTTATCAATGTTATAAAACCAGGAAGTGTGAAAAAGATCAACGA
GAACAAAATGACCTTCAAAGAAATGGAAAATATTGGTAACTTTTTGGCTG
CTTGCGAAAAAATCGGTTGTGTCAAAAACGACCTTTTCCAAACTGTTGAT
TTGTATGAAGGACAAAATATTAACCAGGTACGTTTTTAATTATAAGAACA
CAAAACTTCGAGGCTTAAAATTTAAGAACATTATAAGAACATATTTTTTA
AGGCTTTGCAGACTCTTAAAACACAAAATTTCTTAAGAAATTAGGCTGAA
ATACTCACAAAAAGTCAAAAATAAAAGAACACTTCAAGAACTCTTGTTTA
AACTGTAAAACCCAAAAAGTTAAAAGCATACAAATATGTAATTTAAAATA
TTTTGGCATTCTTATAAAAAAACAATTAGTCCGAGTTGGAGAAAAATTCG
AACAGTAGAAGTTCAATTTAGCGAGGGTTTATCACTTTCGAAGAAAAATT
TTTGCTAATTCAGCACATTACATTACCTTGGTTAAATCAATTTTAGGTTA
TCAACGGAATCGTATCATTGGGTCGCAAAGCCCAGACCATCGGCTACAAC
GGGCCATGTCTCGGCCCCACAGAGTCAACAGAAAACAAACGAGAATTTAC
TGATGAGCAACTTAAAGCCGGAGAGGGCATCATTGGACTTCAAATGGGCT
CCAACAAAGGTGCATCACAAGCTGGACAGAACTTCGGAAAAACCCGTGCT
ATTATTGATTAAATAATCACAAACTATATCCAAAATTATATAGTCAATAC
TACGCAAATATTTTTTTATTCGCCAACTTTATTATTTCTCTTTATGCACC
TTAAGTAATCAAGAAAAATTTTGTTAATAATATGTATTTTACGGAATGGA
CCAAAGAATTGCAATAAATTTTGAATTTCTACCGATTTTAAAGTTTTTTT
TCCAATTAACAAGAGGTTATTATCATTTGTTGTAAAACTTCGTTTAAGAT
TCCAGAAATCAAACTATTTAATTTAAGCCAAAATCAAACCATTTTAGACA
TTTCAAAGATT

Coding sequence (CDS) from alignment at scaffold_169:143383..144993-

>TCONS_00050339 ID=TCONS_00050339|Name=TCONS_00050339|organism=Clytia hemisphaerica|type=CDS|length=2484bp|location=Sequence derived from alignment at scaffold_169:143383..144993- (Clytia hemisphaerica)
AAAAATTTTGTTAAGTTATCAACGGAATCGTATCATTGGGTCGCAAAGCC
CAGACCATCGGCTACAACGGGCCATGTCTCGGCCCCACAGAGTCAACAGA
AAACAAACGAGAATTTACTGATGAGCAACTTAAAGCCGGAGAGGGCATCA
TTGGACTTCAAATGGGTAATTGGGAAATCAGCCGATGTTATTTCGCCATT
GAAAAACGGAAAAATCCTTTGCGAAGTTATCAATGTTATAAAACCAGGAA
GTGTGAAAAAGATCAACGAGAACAAAATGACCTTCAAAGAAATGGAAAAT
ATTGGTAACTTTTTGGCTGCTTGCGAAAAAATCGGTTGTGTCAAAAACGA
CCTTTTCCAAACTGTTGATTTGTATGAAGGACAAAATATTAACCAGTGTC
ATAACCTTAAAAAGTGTCCGTTGAAAAAAAATTATTCTATTTTTCAGACT
AAAATAACAGTAAAAATGGCAAACCGACCAAAAGGATTTGGAATGACCGC
TGAATTGAATCGAAAAAAGGAAGCCAAATTCGATCCAGACCTCGCAACTG
ATTGTTTCCAATGGCTAAAAGAGGTTTTAAATGATGGCGGTAAAGCAGAT
TTAGCTGCATCCTTACCCTCGAAAAATTTTGTTAAGTTATCAACGGAATC
GTATCATTGGGTCGCAAAGCCCAGACCATCGGCTACAACGGGCCATGTCT
CGGCCCCACAGAGTCAACAGAAAACAAACGAGAATTTACTGATGAGCAAC
TTAAAGCCGGAGAGGGCATCATTGGACTTCAAATGGGTAATTGGGAAATC
AGCCGATGTTATTTCGCCATTGAAAAACGGAAAAATCCTTTGCGAAGTTA
TCAATGTTATAAAACCAGGAAGTGTGAAAAAGATCAACGAGAACAAAATG
ACCTTCAAAGAAATGGAAAATATTGGTAACTTTTTGGCTGCTTGCGAAAA
AATCGGTTGTGTCAAAAACGACCTTTTCCAAACTGTTGATTTGTATGAAG
GACAAAATATTAACCAGTGTCATAACCTTAAAAAGTGTCCGTTGAAAAAA
AATTATTCTATTTTTCAGACTAAAATAACAGTAAAAATGGCAAACCGACC
AAAAGGATTTGGAATGACCGCTGAATTGAATCGAAAAAAGGAAGCCAAAT
TCGATCCAGACCTCGCAACTGATTGTTTCCAATGGCTAAAAGAGGTTTTA
AATGATGGCGGTAAAGCAGATTTAGCTGCATCCTTACCCTCGAAAAATTT
TGTTAAGTTATCAACGGAATCGTATCATTGGGTCGCAAAGCCCAGACCAT
CGGCTACAACGGGCCATGTCTCGGCCCCACAGAGTCAACAGAAAACAAAC
GAGAATTTACTGATGAGCAACTTAAAGCCGGAGAGGGCATCATTGGACTT
CAAATGGGTAATTGGGAAATCAGCCGATGTTATTTCGCCATTGAAAAACG
GAAAAATCCTTTGCGAAGTTATCAATGTTATAAAACCAGGAAGTGTGAAA
AAGATCAACGAGAACAAAATGACCTTCAAAGAAATGGAAAATATTGGTAA
CTTTTTGGCTGCTTGCGAAAAAATCGGTTGTGTCAAAAACGACCTTTTCC
AAACTGTTGATTTGTATGAAGGACAAAATATTAACCAGTGTCATAACCTT
AAAAAGTGTCCGTTGAAAAAAAATTATTCTATTTTTCAGACTAAAATAAC
AGTAAAAATGGCAAACCGACCAAAAGGATTTGGAATGACCGCTGAATTGA
ATCGAAAAAAGGAAGCCAAATTCGATCCAGACCTCGCAACTGATTGTTTC
CAATGGCTAAAAGAGGTTTTAAATGATGGCGGTAAAGCAGATTTAGCTGC
ATCCTTACCCTCGAAAAATTTTGTTAAGTTATCAACGGAATCGTATCATT
GGGTCGCAAAGCCCAGACCATCGGCTACAACGGGCCATGTCTCGGCCCCA
CAGAGTCAACAGAAAACAAACGAGAATTTACTGATGAGCAACTTAAAGCC
GGAGAGGGCATCATTGGACTTCAAATGGGTAATTGGGAAATCAGCCGATG
TTATTTCGCCATTGAAAAACGGAAAAATCCTTTGCGAAGTTATCAATGTT
ATAAAACCAGGAAGTGTGAAAAAGATCAACGAGAACAAAATGACCTTCAA
AGAAATGGAAAATATTGGTAACTTTTTGGCTGCTTGCGAAAAAATCGGTT
GTGTCAAAAACGACCTTTTCCAAACTGTTGATTTGTATGAAGGACAAAAT
ATTAACCAGTGTCATAACCTTAAAAAGTGTCCGTTGAAAAAAAATTATTC
TATTTTTCAGACTAAAATAACAGTAAAAATGGCAAACCGACCAAAAGGAT
TTGGAATGACCGCTGAATTGAATCGAAAAAAGGAAGCCAAATTCGATCCA
GACCTCGCAACTGATTGTTTCCAATGGCTAAAAGAGGTTTTAAATGATGG
CGGTAAAGCAGATTTAGCTGCATCCTTACCCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031871XLOC_031871Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050339-exon-scaffold_169-1575043694:144767..144993TCONS_00050339-exon-scaffold_169-1575043694:144767..144993Clytia hemisphaericaexon
TCONS_00050339-exon-scaffold_169-1575043694:144267..144497TCONS_00050339-exon-scaffold_169-1575043694:144267..144497Clytia hemisphaericaexon
TCONS_00050339-exon-scaffold_169-1575043694:143747..143897TCONS_00050339-exon-scaffold_169-1575043694:143747..143897Clytia hemisphaericaexon
TCONS_00050339-exon-scaffold_169-1575043694:143383..143580TCONS_00050339-exon-scaffold_169-1575043694:143383..143580Clytia hemisphaericaexon
TCONS_00050339-exon-scaffold_169-1510915933:144767..144993TCONS_00050339-exon-scaffold_169-1510915933:144767..144993Clytia hemisphaericaexon
TCONS_00050339-exon-scaffold_169-1510915933:144267..144497TCONS_00050339-exon-scaffold_169-1510915933:144267..144497Clytia hemisphaericaexon
TCONS_00050339-exon-scaffold_169-1510915933:143747..143897TCONS_00050339-exon-scaffold_169-1510915933:143747..143897Clytia hemisphaericaexon
TCONS_00050339-exon-scaffold_169-1510915933:143383..143580TCONS_00050339-exon-scaffold_169-1510915933:143383..143580Clytia hemisphaericaexon
TCONS_00050339-exon-scaffold_169-1491911889:144767..144993TCONS_00050339-exon-scaffold_169-1491911889:144767..144993Clytia hemisphaericaexon
TCONS_00050339-exon-scaffold_169-1491911889:144267..144497TCONS_00050339-exon-scaffold_169-1491911889:144267..144497Clytia hemisphaericaexon
TCONS_00050339-exon-scaffold_169-1491911889:143747..143897TCONS_00050339-exon-scaffold_169-1491911889:143747..143897Clytia hemisphaericaexon
TCONS_00050339-exon-scaffold_169-1491911889:143383..143580TCONS_00050339-exon-scaffold_169-1491911889:143383..143580Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050339-proteinTCONS_00050339-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_169supercontigscaffold_169:143383..144993 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
166.71	172.519	222.949	206.554	300.263	232.53	349.109	375.531	666.12	628.979	357.694	451.421	792.607	686.966	417.258	380.032	175.482	219.799	936.66	791.074	11.9311	11.835	38.3653	37.5389	3.18486	2.44447	58.409	2.43092	5.20205	7.5811
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003096SM22_calponin
IPR001997Calponin/LIMCH1
IPR001715CH-domain
Vocabulary: Biological Process
TermDefinition
GO:0031032actomyosin structure organization
Vocabulary: Molecular Function
TermDefinition
GO:0003779actin binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031032 actomyosin structure organization
molecular_function GO:0003779 actin binding
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00050339 vs. Swiss-Prot (Human)
Match: TAGL2 (Transgelin-2 OS=Homo sapiens GN=TAGLN2 PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 3.189e-30
Identity = 68/186 (36.56%), Postives = 101/186 (54.30%), Query Frame = 3 
Query:   72 MANRPKGFGMTAELNRKKEAKFDPDLATDCFQWLKEVLNDGGKADLAASLPSVIGKSADVISPLKNGKILCEVINVIKP---GSVKKINENKMTFKEMENIGNFLAACEKIGCVKNDLFQTVDLYEGQNINQVINGIVSLG----RKAQTIGYNGPCLGPTESTENKREFTDEQLKAGEGIIGLQM 608
            MANR   +G++ E+ +K E ++D DL     QW+        + D+    P       +  + LK+G +LCE+IN + P     VKKI  + M FK+ME I  FL A E+ G    D+FQTVDL+EG+N+  V   +++LG     +   +    P   P +S EN R F+D QL+ G+ +IGLQM
Sbjct:    1 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQC----RKDVGRPQPG----RENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQM 178
The following BLAST results are available for this feature:
BLAST of TCONS_00050339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAGL23.189e-3036.56Transgelin-2 OS=Homo sapiens GN=TAGLN2 PE=1 SV=3[more]
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