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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050765 ID=TCONS_00050765|Name=TCONS_00050765|organism=Clytia hemisphaerica|type=transcript|length=1030bp
CAATTTTCCTAACTTTTCAGTTAAACTAAATAACTTGAATTTctaatcaa
acaaaaaataaaacaagaaatGTCTTTCTTCTGGTCCAAAGTTTCACAAG
TTTCATCATCATTCTTATCTGGGATTGTTCTCGGTCTTCCAATCTACATC
ACGGTCAATGACTATTTCTTCAGTATTGCGCGTGTAGAGGGAGCGTCTAT
GAAACCTGCTTTAAATCCAAATGGTAAAAAACAAtcagattttgttttta
ttgaccGCTGGCATACTCTACCTAAAGACATTCAACCAGGAGATATTGTT
GCTTTGACTTCCCCTACTAATCATCAGGTGAGTTTCATCAAACGTGTTAT
TGGTATAGAAGGAGAATTTCTAAACACACCACGTTATAGATTGAATTCAG
TTATGATTCCAAAAGGACATTTCTGGGTGGAAGGTGACAATTATCGGTCA
TCCCTTGATAGCAATAAATTTGGCCCAATATCAATGGGTCTCGTAAAAGG
GAAGGCAACGCATGTAATATGGCCACCTGATCGTTGGTCAAGACTTGAGA
ATGAAATTCCAGAAAAGTCTCCGACTGAGAGGATTGATATTAGAGCACAT
AACAGACCTAAAGTCATTCCCAAGAAGATTGGTGTTACAATAGAAATAGA
TCAAGGAGATAATGAGGATTCTGAAATTGGGAATATTTTAAGCTATGATG
TTGAAATGGCGTTAACAGAGGAACCGACTATAAACATTGATGGTGCTATA
AACATAAATGAGGACGAGCAAGAATATATTGAAGCAATTGAAGCTCTAGA
ACAATATGAGAAGGAAGAAAAGGAAAAGAGAAAGGAGGCTGATGTAGTAA
AAGATAACGAAACCGCCAATGAATagatattttatttcatttttctttca
aatttgaaattagtacttttgttctaaaatattttcttgattgATCTTCA
GATGATTACACTCCCCTTTTTAAAAGCTCTGTTTGAATCAGTCAAACATT
CAAAAGCTGTATGCATTAGATGAGACTATG Run BLAST on NCBI protein sequence of TCONS_00050765-protein >TCONS_00050765-protein ID=TCONS_00050765-protein|Name=TCONS_00050765-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MSFFWSKVSQVSSSFLSGIVLGLPIYITVNDYFFSIARVEGASMKPALNP
NGKKQSDFVFIDRWHTLPKDIQPGDIVALTSPTNHQVSFIKRVIGIEGEF
LNTPRYRLNSVMIPKGHFWVEGDNYRSSLDSNKFGPISMGLVKGKATHVI
WPPDRWSRLENEIPEKSPTERIDIRAHNRPKVIPKKIGVTIEIDQGDNED
SEIGNILSYDVEMALTEEPTINIDGAININEDEQEYIEAIEALEQYEKEE
KEKRKEADVVKDNETANE Run BLAST on NCBI transcript from alignment at scaffold_185:82595..83624 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050765 ID=TCONS_00050765|Name=TCONS_00050765|organism=Clytia hemisphaerica|type=transcript|length=1030bp|location=Sequence derived from alignment at scaffold_185:82595..83624 (Clytia hemisphaerica)
CATAGTCTCATCTAATGCATACAGCTTTTGAATGTTTGACTGATTCAAAC
AGAGCTTTTAAAAAGGGGAGTGTAATCATCTGAAGATcaatcaagaaaat
attttagaacaaaagtactaatttcaaatttgaaagaaaaatgaaataaa
atatctATTCATTGGCGGTTTCGTTATCTTTTACTACATCAGCCTCCTTT
CTCTTTTCCTTTTCTTCCTTCTCATATTGTTCTAGAGCTTCAATTGCTTC
AATATATTCTTGCTCGTCCTCATTTATGTTTATAGCACCATCAATGTTTA
TAGTCGGTTCCTCTGTTAACGCCATTTCAACATCATAGCTTAAAATATTC
CCAATTTCAGAATCCTCATTATCTCCTTGATCTATTTCTATTGTAACACC
AATCTTCTTGGGAATGACTTTAGGTCTGTTATGTGCTCTAATATCAATCC
TCTCAGTCGGAGACTTTTCTGGAATTTCATTCTCAAGTCTTGACCAACGA
TCAGGTGGCCATATTACATGCGTTGCCTTCCCTTTTACGAGACCCATTGA
TATTGGGCCAAATTTATTGCTATCAAGGGATGACCGATAATTGTCACCTT
CCACCCAGAAATGTCCTTTTGGAATCATAACTGAATTCAATCTATAACGT
GGTGTGTTTAGAAATTCTCCTTCTATACCAATAACACGTTTGATGAAACT
CACCTGATGATTAGTAGGGGAAGTCAAAGCAACAATATCTCCTGGTTGAA
TGTCTTTAGGTAGAGTATGCCAGCggtcaataaaaacaaaatctgaTTGT
TTTTTACCATTTGGATTTAAAGCAGGTTTCATAGACGCTCCCTCTACACG
CGCAATACTGAAGAAATAGTCATTGACCGTGATGTAGATTGGAAGACCGA
GAACAATCCCAGATAAGAATGATGATGAAACTTGTGAAACTTTGGACCAG
AAGAAAGACatttcttgttttattttttgtttgattagAAATTCAAGTTA
TTTAGTTTAACTGAAAAGTTAGGAAAATTG Coding sequence (CDS) from alignment at scaffold_185:82595..83624 >TCONS_00050765 ID=TCONS_00050765|Name=TCONS_00050765|organism=Clytia hemisphaerica|type=CDS|length=807bp|location=Sequence derived from alignment at scaffold_185:82595..83624 (Clytia hemisphaerica)
ctATTCATTGGCGGTTTCGTTATCTTTTACTACATCAGCCTCCTTTCTCT
TTTCCTTTTCTTCCTTCTCATATTGTTCTAGAGCTTCAATTGCTTCAATA
TATTCTTGCTCGTCCTCATTTATGTTTATAGCACCATCAATGTTTATAGT
CGGTTCCTCTGTTAACGCCATTTCAACATCATAGCTTAAAATATTCCCAA
TTTCAGAATCCTCATTATCTCCTTGATCTATTTCTATTGTAACACCAATC
TTCTTGGGAATGACTTTAGGTCTGTTATGTGCTCTAATATCAATCCTCTC
AGTCGGAGACTTTTCTGGAATTTCATTCTCAAGTCTTGACCAACGATCAG
GTGGCCATATTACATGCGTTGCCTTCCCTTTTACGAGACCCATTGATATT
GGGCCAAATTTATTGCTATCAAGGGATGACCGATAATTGTCACCTTCCAC
CCAGAAATGTCCTTTTGGAATCATAACTGAATTCAATCTATAACGTGGTG
TGTTTAGAAATTCTCCTTCTATACCAATAACACGTTTGATGAAACTCACC
TGATGATTAGTAGGGGAAGTCAAAGCAACAATATCTCCTGGTTGAATGTC
TTTAGGTAGAGTATGCCAGCggtcaataaaaacaaaatctgaTTGTTTTT
TACCATTTGGATTTAAAGCAGGTTTCATAGACGCTCCCTCTACACGCGCA
ATACTGAAGAAATAGTCATTGACCGTGATGTAGATTGGAAGACCGAGAAC
AATCCCAGATAAGAATGATGATGAAACTTGTGAAACTTTGGACCAGAAGA
AAGACat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050765-exon-scaffold_185-1491911889:82595..83624 | TCONS_00050765-exon-scaffold_185-1491911889:82595..83624 | Clytia hemisphaerica | exon |
| TCONS_00050765-exon-scaffold_185-1510915933:82595..83624 | TCONS_00050765-exon-scaffold_185-1510915933:82595..83624 | Clytia hemisphaerica | exon |
| TCONS_00050765-exon-scaffold_185-1575043694:82595..83624 | TCONS_00050765-exon-scaffold_185-1575043694:82595..83624 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_185 | supercontig | scaffold_185:82595..83624 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008236 | serine-type peptidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| cellular_component |
GO:0016021 |
integral component of membrane |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008236 |
serine-type peptidase activity |
Blast
BLAST of TCONS_00050765 vs. Swiss-Prot (Human)
Match: IMP2L (Mitochondrial inner membrane protease subunit 2 OS=Homo sapiens GN=IMMP2L PE=2 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.422e-45 Identity = 69/152 (45.39%), Postives = 103/152 (67.76%), Query Frame = 1
Query: 130 LGLPIYITVNDYFFSIARVEGASMKPALNPNGKKQSDFVFIDRWHTLPKDIQPGDIVALTSPTNHQVSFIKRVIGIEGEFLNTPRYRLNSVMIPKGHFWVEGDNYRSSLDSNKFGPISMGLVKGKATHVIWPPDRWSRLENEI-PEKSPTER 582
+ +P+ +T D +ARVEGASM+P+LNP G + SD V ++ W ++ GDIV+L SP N + IKRVI +EG+ + T ++ V +P+GH WVEGD++ S DSN FGP+S+GL+ ATH++WPP+RW +LE+ + PE+ P +R
Sbjct: 21 VAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVLLNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRYVKVPRGHIWVEGDHHGHSFDSNSFGPVSLGLLHAHATHILWPPERWQKLESVLPPERLPVQR 172
The following BLAST results are available for this feature:
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