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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050798 ID=TCONS_00050798|Name=TCONS_00050798|organism=Clytia hemisphaerica|type=transcript|length=1590bp
ACACGGAACTACAATTGTGCAGAACCTGCCAAAACATCAAGAGTACTACC
AAACTACTTGAAATTCGTCGAAGACACTAACATtatcaatgtaaacaaaa
tgaACGACACCAtttggtttcttttgaaaactttgaatcCAACATTGGGT
AAGGTCGTGCCGACGTGGGCTGCTTACAACTCTTTGCTCGGAAAGGAAAA
ACCACTCACAAATGCTGCCATGCTACCTGTCAAAAACGGTAGTCCGACCC
CAGTCCGACAGACTGGGAAAACTTGTATTCAGCAATAAAGGATGCAGAAA
AACTGAGAAAGAAAGTCTATAAGGAAAGACAATCATTTCGTTTGATTTAC
AGCTTTACATTATTAAGCTATCCGACTCCAAGAGAGATGACATAAAGGAC
ACGTTTGTTTTCCGCATGGGTGAATTACACGTCGTCTTCTGTGTTCTAAA
GTGCATTGGCAAACTGATTGATGAAAGTGGCCTGGATAATGTATTTCACG
TAGCAGGAATATATGGCTTGCCAACCATCGATCAAATCAAGGATGGCAAA
CATCTTTACAGATGTCTGGAGGCTCATTTTGCTCTGTACTCTGCTTTGTT
TACTCGTTACTTCGAATGTTTCATTGACCACAACCAGACAATCGAAAGAG
ATCTCAGGGCTGTTATCGTACATTCCATCTCCGAAGTTTCGATCTACGAC
ACCACTAAAAGAAATATCGTCGATGAGAAGCATGGTGGTATCAAAGGTGT
TCTAAATGATACAAATTTCAGTGATCTTCAGAAAAAATTCGATTCCCAGA
TTTCAAACCAGTCaaaattcccaagaaatttcaTGAAACTTTTTGAGTTG
CTGTTATTATTTATACGTGCATCGCGTGATCAGTTGTGGGAACTTCACTT
GAAAACTCTTCACGCCTTATGTCCTTATTTCTTCGCATTTGACATGATCA
ATTACGCAAGAGTGACTCCCGTCTACCTGTCGCAAATGTTAAACCTGAAG
CAGACAGATAACTATCAAATGGTGGCTTTTGTGTCAACAAATCCAAAGTG
CCATTTACGTCAATAGGGACCGACCATGGTATTGAACAAGAAAATCGAGC
CTTAAAGGTGACCGGAGGAATTAGAGGTATTGCACATAATCAGGAAGCAT
TAAATGAGTACTTCCTCACAACAGCTGAAATGGGAAACATCGTTGAAAGT
TTTTGTCAAACATTCGGAATTGAAGAAGACAGCTCCAGAAAAAGAGACGA
GCACTATCAACTAACTGGATCGAAGAACGAACGAATCAGAACCTACACTG
ACAAAATATCAACCGTCTTTACCGAGCACGAAGTTTTTTTCCTCATCAAC
ACAACCAATGAATTGGAATCAAACGAGGTTAACGAAAACGCAGATACACC
CGAAACCGAGACCAAGGATGATGTTTACAACGTTTTAACGAAAAAGGTGC
TCCCTGATAAGATGGCAGAAACGTTCATCAAAGTTGAAGAAATAGGAGAg
aaacgttacaaatcatttatAGCTGACAAATTGGAAGGTAAAGTCCCTGT
CTGAATCTTCAATCTAAgtatttttgtatttcaaaGAGGC Run BLAST on NCBI protein sequence of TCONS_00050798-protein >TCONS_00050798-protein ID=TCONS_00050798-protein|Name=TCONS_00050798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MGELHVVFCVLKCIGKLIDESGLDNVFHVAGIYGLPTIDQIKDGKHLYRC
LEAHFALYSALFTRYFECFIDHNQTIERDLRAVIVHSISEVSIYDTTKRN
IVDEKHGGIKGVLNDTNFSDLQKKFDSQISNQSKFPRNFMKLFELLLLFI
RASRDQLWELHLKTLHALCPYFFAFDMINYARVTPVYLSQMLNLKQTDNY
QMVAFVSTNPKCHLRQ Run BLAST on NCBI transcript from alignment at scaffold_189:75819..77526+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050798 ID=TCONS_00050798|Name=TCONS_00050798|organism=Clytia hemisphaerica|type=transcript|length=1708bp|location=Sequence derived from alignment at scaffold_189:75819..77526+ (Clytia hemisphaerica)
ACACGGAACTACAATTGTGCAGAACCTGCCAAAACATCAAGAGTACTACC
AAACTACTTGAAATTCGTCGAAGACACTAACATtatcaatgtaaacaaaa
tgaACGACACCAtttggtttcttttgaaaactttgaatcCAACATTGGGT
AAGGTCGTGCCGACGTGGGCTGCTTACAACTCTTTGCTCGGAAAGGAAAA
ACCACTCACAAATGCTGCCATGCTACCTGTCAAAAACGGTAGTCCGACCC
CAGTCCGACAGACTGGGAAAACTTGTATTCAGCAATAAAGGATGCAGAAA
AACTGAGAAAGAAAGTCTATAAGGAAAGACAATCATTTCGTTTGATTTAC
AGCTTTACATTATTAAGCTATCCGACTCCAAGAGAGATGACATAAAGGAC
ACGTTTGTTTTCCGCATGGGTGAATTACACGTCGTCTTCTGTGTTCTAAA
GTGCATTGGCAAACTGATTGATGAAAGTGGCCTGGATAATGTATTTCACG
TAGCAGGTAATTGTTGTTTCGGTGTATATGGCTTACAATTTCTgtaaact
ttgaaattattacaACTTATTTCTTTGTAATTACTCTTCAACGATTATAT
CAATTGTTGTACTTTCAATTTTAGGAATATATGGCTTGCCAACCATCGAT
CAAATCAAGGATGGCAAACATCTTTACAGATGTCTGGAGGCTCATTTTGC
TCTGTACTCTGCTTTGTTTACTCGTTACTTCGAATGTTTCATTGACCACA
ACCAGACAATCGAAAGAGATCTCAGGGCTGTTATCGTACATTCCATCTCC
GAAGTTTCGATCTACGACACCACTAAAAGAAATATCGTCGATGAGAAGCA
TGGTGGTATCAAAGGTGTTCTAAATGATACAAATTTCAGTGATCTTCAGA
AAAAATTCGATTCCCAGATTTCAAACCAGTCaaaattcccaagaaatttc
aTGAAACTTTTTGAGTTGCTGTTATTATTTATACGTGCATCGCGTGATCA
GTTGTGGGAACTTCACTTGAAAACTCTTCACGCCTTATGTCCTTATTTCT
TCGCATTTGACATGATCAATTACGCAAGAGTGACTCCCGTCTACCTGTCG
CAAATGTTAAACCTGAAGCAGACAGATAACTATCAAATGGTGGCTTTTGT
GTCAACAAATCCAAAGTGCCATTTACGTCAATAGGGACCGACCATGGTAT
TGAACAAGAAAATCGAGCCTTAAAGGTGACCGGAGGAATTAGAGGTATTG
CACATAATCAGGAAGCATTAAATGAGTACTTCCTCACAACAGCTGAAATG
GGAAACATCGTTGAAAGTTTTTGTCAAACATTCGGAATTGAAGAAGACAG
CTCCAGAAAAAGAGACGAGCACTATCAACTAACTGGATCGAAGAACGAAC
GAATCAGAACCTACACTGACAAAATATCAACCGTCTTTACCGAGCACGAA
GTTTTTTTCCTCATCAACACAACCAATGAATTGGAATCAAACGAGGTTAA
CGAAAACGCAGATACACCCGAAACCGAGACCAAGGATGATGTTTACAACG
TTTTAACGAAAAAGGTGCTCCCTGATAAGATGGCAGAAACGTTCATCAAA
GTTGAAGAAATAGGAGAgaaacgttacaaatcatttatAGCTGACAAATT
GGAAGGTAAAGTCCCTGTCTGAATCTTCAATCTAAgtatttttgtatttc
aaaGAGGC Coding sequence (CDS) from alignment at scaffold_189:75819..77526+ >TCONS_00050798 ID=TCONS_00050798|Name=TCONS_00050798|organism=Clytia hemisphaerica|type=CDS|length=1302bp|location=Sequence derived from alignment at scaffold_189:75819..77526+ (Clytia hemisphaerica)
ATGGGTGAATTACACGTCGTCTTCTGTGTTCTAAAGTGCATTGGCAAACT
GATTGATGAAAGTGGCCTGGATAATGTATTTCACGTAGCAGGAATATATG
GCTTGCCAACCATCGATCAAATCAAGGATGGCAAACATCTTTACAGATGT
CTGGAGGCTCATTTTGCTCTGTACTCTGCTTTGTTTACTCGTTACTTCGA
ATGTTTCATTGACCACAACCAGACAATCGAAAGAGATCTCAGGGCTGTTA
TCGTACATTCCATCTCCGAAGTTTCGATCTACGACACCACTAAAAGAAAT
ATCGTCGATGAGAAGCATGGTGGTATCAAAGGTGTTCTAAATGATACAAA
TTTCAGTGATCTTCAGAAAAAATTCGATTCCCAGATTTCAAACCAGTCaa
aattcccaagaaatttcaTGAAACTTTTTGAGTTGCTGTTATTATTTATA
CGTGCATCGCGTGATCAGTTGTGGGAACTTCACTTGAAAACTCTTCACGC
CTTATGTCCTTATTTCTTCGCATTTGACATGATCAATTACGCAAGAGTGA
CTCCCGTCTACCTGTCGCAAATGTTAAACCTGAAGCAGACAGATAACTAT
CAAATGGTGGCTTTTGTGTCAACAAATCCAAAGTGCCATTTACGTCAATA
GATGGGTGAATTACACGTCGTCTTCTGTGTTCTAAAGTGCATTGGCAAAC
TGATTGATGAAAGTGGCCTGGATAATGTATTTCACGTAGCAGGAATATAT
GGCTTGCCAACCATCGATCAAATCAAGGATGGCAAACATCTTTACAGATG
TCTGGAGGCTCATTTTGCTCTGTACTCTGCTTTGTTTACTCGTTACTTCG
AATGTTTCATTGACCACAACCAGACAATCGAAAGAGATCTCAGGGCTGTT
ATCGTACATTCCATCTCCGAAGTTTCGATCTACGACACCACTAAAAGAAA
TATCGTCGATGAGAAGCATGGTGGTATCAAAGGTGTTCTAAATGATACAA
ATTTCAGTGATCTTCAGAAAAAATTCGATTCCCAGATTTCAAACCAGTCa
aaattcccaagaaatttcaTGAAACTTTTTGAGTTGCTGTTATTATTTAT
ACGTGCATCGCGTGATCAGTTGTGGGAACTTCACTTGAAAACTCTTCACG
CCTTATGTCCTTATTTCTTCGCATTTGACATGATCAATTACGCAAGAGTG
ACTCCCGTCTACCTGTCGCAAATGTTAAACCTGAAGCAGACAGATAACTA
TCAAATGGTGGCTTTTGTGTCAACAAATCCAAAGTGCCATTTACGTCAAT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050798-exon-scaffold_189-1491911889:75819..76324 | TCONS_00050798-exon-scaffold_189-1491911889:75819..76324 | Clytia hemisphaerica | exon |
| TCONS_00050798-exon-scaffold_189-1510915933:75819..76324 | TCONS_00050798-exon-scaffold_189-1510915933:75819..76324 | Clytia hemisphaerica | exon |
| TCONS_00050798-exon-scaffold_189-1575043694:75819..76324 | TCONS_00050798-exon-scaffold_189-1575043694:75819..76324 | Clytia hemisphaerica | exon |
| TCONS_00050798-exon-scaffold_189-1491911889:76443..77526 | TCONS_00050798-exon-scaffold_189-1491911889:76443..77526 | Clytia hemisphaerica | exon |
| TCONS_00050798-exon-scaffold_189-1510915933:76443..77526 | TCONS_00050798-exon-scaffold_189-1510915933:76443..77526 | Clytia hemisphaerica | exon |
| TCONS_00050798-exon-scaffold_189-1575043694:76443..77526 | TCONS_00050798-exon-scaffold_189-1575043694:76443..77526 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:75819..77526 + |
Blast
The following BLAST results are available for this feature:
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