TCONS_00050798 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050798
Unique NameTCONS_00050798
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1590

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050798 ID=TCONS_00050798|Name=TCONS_00050798|organism=Clytia hemisphaerica|type=transcript|length=1590bp
ACACGGAACTACAATTGTGCAGAACCTGCCAAAACATCAAGAGTACTACC
AAACTACTTGAAATTCGTCGAAGACACTAACATtatcaatgtaaacaaaa
tgaACGACACCAtttggtttcttttgaaaactttgaatcCAACATTGGGT
AAGGTCGTGCCGACGTGGGCTGCTTACAACTCTTTGCTCGGAAAGGAAAA
ACCACTCACAAATGCTGCCATGCTACCTGTCAAAAACGGTAGTCCGACCC
CAGTCCGACAGACTGGGAAAACTTGTATTCAGCAATAAAGGATGCAGAAA
AACTGAGAAAGAAAGTCTATAAGGAAAGACAATCATTTCGTTTGATTTAC
AGCTTTACATTATTAAGCTATCCGACTCCAAGAGAGATGACATAAAGGAC
ACGTTTGTTTTCCGCATGGGTGAATTACACGTCGTCTTCTGTGTTCTAAA
GTGCATTGGCAAACTGATTGATGAAAGTGGCCTGGATAATGTATTTCACG
TAGCAGGAATATATGGCTTGCCAACCATCGATCAAATCAAGGATGGCAAA
CATCTTTACAGATGTCTGGAGGCTCATTTTGCTCTGTACTCTGCTTTGTT
TACTCGTTACTTCGAATGTTTCATTGACCACAACCAGACAATCGAAAGAG
ATCTCAGGGCTGTTATCGTACATTCCATCTCCGAAGTTTCGATCTACGAC
ACCACTAAAAGAAATATCGTCGATGAGAAGCATGGTGGTATCAAAGGTGT
TCTAAATGATACAAATTTCAGTGATCTTCAGAAAAAATTCGATTCCCAGA
TTTCAAACCAGTCaaaattcccaagaaatttcaTGAAACTTTTTGAGTTG
CTGTTATTATTTATACGTGCATCGCGTGATCAGTTGTGGGAACTTCACTT
GAAAACTCTTCACGCCTTATGTCCTTATTTCTTCGCATTTGACATGATCA
ATTACGCAAGAGTGACTCCCGTCTACCTGTCGCAAATGTTAAACCTGAAG
CAGACAGATAACTATCAAATGGTGGCTTTTGTGTCAACAAATCCAAAGTG
CCATTTACGTCAATAGGGACCGACCATGGTATTGAACAAGAAAATCGAGC
CTTAAAGGTGACCGGAGGAATTAGAGGTATTGCACATAATCAGGAAGCAT
TAAATGAGTACTTCCTCACAACAGCTGAAATGGGAAACATCGTTGAAAGT
TTTTGTCAAACATTCGGAATTGAAGAAGACAGCTCCAGAAAAAGAGACGA
GCACTATCAACTAACTGGATCGAAGAACGAACGAATCAGAACCTACACTG
ACAAAATATCAACCGTCTTTACCGAGCACGAAGTTTTTTTCCTCATCAAC
ACAACCAATGAATTGGAATCAAACGAGGTTAACGAAAACGCAGATACACC
CGAAACCGAGACCAAGGATGATGTTTACAACGTTTTAACGAAAAAGGTGC
TCCCTGATAAGATGGCAGAAACGTTCATCAAAGTTGAAGAAATAGGAGAg
aaacgttacaaatcatttatAGCTGACAAATTGGAAGGTAAAGTCCCTGT
CTGAATCTTCAATCTAAgtatttttgtatttcaaaGAGGC
Run BLAST on NCBI

protein sequence of TCONS_00050798-protein

>TCONS_00050798-protein ID=TCONS_00050798-protein|Name=TCONS_00050798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MGELHVVFCVLKCIGKLIDESGLDNVFHVAGIYGLPTIDQIKDGKHLYRC
LEAHFALYSALFTRYFECFIDHNQTIERDLRAVIVHSISEVSIYDTTKRN
IVDEKHGGIKGVLNDTNFSDLQKKFDSQISNQSKFPRNFMKLFELLLLFI
RASRDQLWELHLKTLHALCPYFFAFDMINYARVTPVYLSQMLNLKQTDNY
QMVAFVSTNPKCHLRQ
Run BLAST on NCBI

transcript from alignment at scaffold_189:75819..77526+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050798 ID=TCONS_00050798|Name=TCONS_00050798|organism=Clytia hemisphaerica|type=transcript|length=1708bp|location=Sequence derived from alignment at scaffold_189:75819..77526+ (Clytia hemisphaerica)
ACACGGAACTACAATTGTGCAGAACCTGCCAAAACATCAAGAGTACTACC AAACTACTTGAAATTCGTCGAAGACACTAACATtatcaatgtaaacaaaa tgaACGACACCAtttggtttcttttgaaaactttgaatcCAACATTGGGT AAGGTCGTGCCGACGTGGGCTGCTTACAACTCTTTGCTCGGAAAGGAAAA ACCACTCACAAATGCTGCCATGCTACCTGTCAAAAACGGTAGTCCGACCC CAGTCCGACAGACTGGGAAAACTTGTATTCAGCAATAAAGGATGCAGAAA AACTGAGAAAGAAAGTCTATAAGGAAAGACAATCATTTCGTTTGATTTAC AGCTTTACATTATTAAGCTATCCGACTCCAAGAGAGATGACATAAAGGAC ACGTTTGTTTTCCGCATGGGTGAATTACACGTCGTCTTCTGTGTTCTAAA GTGCATTGGCAAACTGATTGATGAAAGTGGCCTGGATAATGTATTTCACG TAGCAGGTAATTGTTGTTTCGGTGTATATGGCTTACAATTTCTgtaaact ttgaaattattacaACTTATTTCTTTGTAATTACTCTTCAACGATTATAT CAATTGTTGTACTTTCAATTTTAGGAATATATGGCTTGCCAACCATCGAT CAAATCAAGGATGGCAAACATCTTTACAGATGTCTGGAGGCTCATTTTGC TCTGTACTCTGCTTTGTTTACTCGTTACTTCGAATGTTTCATTGACCACA ACCAGACAATCGAAAGAGATCTCAGGGCTGTTATCGTACATTCCATCTCC GAAGTTTCGATCTACGACACCACTAAAAGAAATATCGTCGATGAGAAGCA TGGTGGTATCAAAGGTGTTCTAAATGATACAAATTTCAGTGATCTTCAGA AAAAATTCGATTCCCAGATTTCAAACCAGTCaaaattcccaagaaatttc aTGAAACTTTTTGAGTTGCTGTTATTATTTATACGTGCATCGCGTGATCA GTTGTGGGAACTTCACTTGAAAACTCTTCACGCCTTATGTCCTTATTTCT TCGCATTTGACATGATCAATTACGCAAGAGTGACTCCCGTCTACCTGTCG CAAATGTTAAACCTGAAGCAGACAGATAACTATCAAATGGTGGCTTTTGT GTCAACAAATCCAAAGTGCCATTTACGTCAATAGGGACCGACCATGGTAT TGAACAAGAAAATCGAGCCTTAAAGGTGACCGGAGGAATTAGAGGTATTG CACATAATCAGGAAGCATTAAATGAGTACTTCCTCACAACAGCTGAAATG GGAAACATCGTTGAAAGTTTTTGTCAAACATTCGGAATTGAAGAAGACAG CTCCAGAAAAAGAGACGAGCACTATCAACTAACTGGATCGAAGAACGAAC GAATCAGAACCTACACTGACAAAATATCAACCGTCTTTACCGAGCACGAA GTTTTTTTCCTCATCAACACAACCAATGAATTGGAATCAAACGAGGTTAA CGAAAACGCAGATACACCCGAAACCGAGACCAAGGATGATGTTTACAACG TTTTAACGAAAAAGGTGCTCCCTGATAAGATGGCAGAAACGTTCATCAAA GTTGAAGAAATAGGAGAgaaacgttacaaatcatttatAGCTGACAAATT GGAAGGTAAAGTCCCTGTCTGAATCTTCAATCTAAgtatttttgtatttc aaaGAGGC

Coding sequence (CDS) from alignment at scaffold_189:75819..77526+

>TCONS_00050798 ID=TCONS_00050798|Name=TCONS_00050798|organism=Clytia hemisphaerica|type=CDS|length=1302bp|location=Sequence derived from alignment at scaffold_189:75819..77526+ (Clytia hemisphaerica)
ATGGGTGAATTACACGTCGTCTTCTGTGTTCTAAAGTGCATTGGCAAACT
GATTGATGAAAGTGGCCTGGATAATGTATTTCACGTAGCAGGAATATATG
GCTTGCCAACCATCGATCAAATCAAGGATGGCAAACATCTTTACAGATGT
CTGGAGGCTCATTTTGCTCTGTACTCTGCTTTGTTTACTCGTTACTTCGA
ATGTTTCATTGACCACAACCAGACAATCGAAAGAGATCTCAGGGCTGTTA
TCGTACATTCCATCTCCGAAGTTTCGATCTACGACACCACTAAAAGAAAT
ATCGTCGATGAGAAGCATGGTGGTATCAAAGGTGTTCTAAATGATACAAA
TTTCAGTGATCTTCAGAAAAAATTCGATTCCCAGATTTCAAACCAGTCaa
aattcccaagaaatttcaTGAAACTTTTTGAGTTGCTGTTATTATTTATA
CGTGCATCGCGTGATCAGTTGTGGGAACTTCACTTGAAAACTCTTCACGC
CTTATGTCCTTATTTCTTCGCATTTGACATGATCAATTACGCAAGAGTGA
CTCCCGTCTACCTGTCGCAAATGTTAAACCTGAAGCAGACAGATAACTAT
CAAATGGTGGCTTTTGTGTCAACAAATCCAAAGTGCCATTTACGTCAATA
GATGGGTGAATTACACGTCGTCTTCTGTGTTCTAAAGTGCATTGGCAAAC
TGATTGATGAAAGTGGCCTGGATAATGTATTTCACGTAGCAGGAATATAT
GGCTTGCCAACCATCGATCAAATCAAGGATGGCAAACATCTTTACAGATG
TCTGGAGGCTCATTTTGCTCTGTACTCTGCTTTGTTTACTCGTTACTTCG
AATGTTTCATTGACCACAACCAGACAATCGAAAGAGATCTCAGGGCTGTT
ATCGTACATTCCATCTCCGAAGTTTCGATCTACGACACCACTAAAAGAAA
TATCGTCGATGAGAAGCATGGTGGTATCAAAGGTGTTCTAAATGATACAA
ATTTCAGTGATCTTCAGAAAAAATTCGATTCCCAGATTTCAAACCAGTCa
aaattcccaagaaatttcaTGAAACTTTTTGAGTTGCTGTTATTATTTAT
ACGTGCATCGCGTGATCAGTTGTGGGAACTTCACTTGAAAACTCTTCACG
CCTTATGTCCTTATTTCTTCGCATTTGACATGATCAATTACGCAAGAGTG
ACTCCCGTCTACCTGTCGCAAATGTTAAACCTGAAGCAGACAGATAACTA
TCAAATGGTGGCTTTTGTGTCAACAAATCCAAAGTGCCATTTACGTCAAT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032179XLOC_032179Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050798-proteinTCONS_00050798-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050798-exon-scaffold_189-1491911889:75819..76324TCONS_00050798-exon-scaffold_189-1491911889:75819..76324Clytia hemisphaericaexon
TCONS_00050798-exon-scaffold_189-1510915933:75819..76324TCONS_00050798-exon-scaffold_189-1510915933:75819..76324Clytia hemisphaericaexon
TCONS_00050798-exon-scaffold_189-1575043694:75819..76324TCONS_00050798-exon-scaffold_189-1575043694:75819..76324Clytia hemisphaericaexon
TCONS_00050798-exon-scaffold_189-1491911889:76443..77526TCONS_00050798-exon-scaffold_189-1491911889:76443..77526Clytia hemisphaericaexon
TCONS_00050798-exon-scaffold_189-1510915933:76443..77526TCONS_00050798-exon-scaffold_189-1510915933:76443..77526Clytia hemisphaericaexon
TCONS_00050798-exon-scaffold_189-1575043694:76443..77526TCONS_00050798-exon-scaffold_189-1575043694:76443..77526Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_189supercontigscaffold_189:75819..77526 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.128449 0.100207 0 0 1.14326 0.766538 1.51931 1.91709 0.627803 1.63572 0.728765 0.667264 1.21307 0.567792 0.0437627 0.125238 0.366421 0.336036 0 0.0571536 0.173869 0.290768 0.0294555 0.133897 2.39964 3.69245 0.140904 0.18797 0.199596 0.029051
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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