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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050799 ID=TCONS_00050799|Name=TCONS_00050799|organism=Clytia hemisphaerica|type=transcript|length=2355bp
ATTTGCTTATCTCCCCAAGCAAGCAAAACAGTGGATAGTCACAAAATATG
ACAGTGTAAAAAACAGGTCTGAAAATAAcaggaaggtcagaatcacttaT
TGAAATTATAATTTTATTATGATAAGAGGTTGTATACTTTGTGGTATGTT
TGAAACTGCAGTTAAAACCAGACTGACCGGACAAAGTGAAACAGCTAAAA
AATATCTATTTCTGAAGTTCATTGGGCCCAACGTCTTAACTgaatgttat
tgtttttatgtcCAGTGCATTTTGACTTACTTTTTGACGTCAGAAAACAG
CAGCACACTCTCAGGTTTATCAGCAGGGTCATTGAAAAGGCTTTGGCATT
TGAAAAGACTATTAAAGCAGAGGGTGCTGATGGAGTTTCTGAATGCTAGA
AATCCAAAGTTTTCAAGTGATCTTGAACGATTCCTTTATTCCCGTCATTC
CAATTATCGAAAAGTGGGTTACTTAGGGGTGAAGCTACTCATTTTGCCAC
AACAAACATTAATATTAAGGTTCCACCAGACTCTTAAgtttctctagatc
aaaatatTCTTACTCCCATCAATgctaaaagaaaatatatttagaTATAG
GTTGTTGAGAGATATTATGTTAAATAGGGCTATCACCTGAGGTGTCAACC
TGAATTCACAGGACCCAGCAggactttttaactttttttgttaattctat
TCTAATTTGGTTTTACAGGAATGGAGTGAGGTTGTTCAGCTCTACACAGC
CAAAATGTGCAACCTTACAGGATATTCAAATCCGTCTTAAATCCctccaa
aatattcaaaagattACCAAAACTATGCAGATGGTGTCAGCTGCTAAATA
TTCACGTGCAGAACGTGAGCTGAAACCAGCCAGAGTCTATGGCACTGGAG
CCAAAGCATTATTTGAAAAAGCTGAATTGGAAAGTGACAAGACTCAACCT
AACCATCTGATCATTGCTATTTCCTCTGATCGTGGTCTTTGTGGTGGTAT
CCATTCTGGTATCTCCAAAGCCATTCGTGCCAAAACTGCTGACTCTGGTG
TAGATACTAAATTAATTATATGCGGGGACAAAGCAAGAAGCATTTTACAA
AGAACTCATAGCAATGATATTCTGTTTCACATGAATGAGTTGGGCCGTAA
ACCACCACTTTTTGAAGAAGCCTCATTTGTTGCGGAACAAGTTTTAGATT
CTGGATATGAATTTGATTCTGGTGAAATGATGTTCAATAAATTCAACTCT
GTTGTATCATACAGCGTTACTGAACAAGATATCTTCTCTTTCAACAGCTT
GAGTACTGCTGAAACCATGTTACAATATGATGACGTAGATGAAGATGTGT
TGCGCAATTACCACGAATTCTCCCTTGCCAACATCGTTTTCTATGGAATG
AAAGAAAGCGCATGCTCAGAACAATCTGCAAGAATGACTGCTATGGACAA
TGCTACTAAGAATGCTGGTGACATGATTGACCGTCTCCGAATCACCTACA
ACAGAACACGTCAAGCCGTCATCACCACAGAATTGACCGAAATCATCTCT
GGTTGTGTTGCCCTAGAAACTGCTGACTAAGCAATAAAAATGTCAACACT
AGCAATAttaattataaatatttttaaattttttttggaatcccACAACA
TCGTTTTTTTCCAACCCAACCAAAGTATGAAAATTtgtagaaaatgtttt
tttcaaatttctgttttaaaaattgaccatataaaatttaaaaaacttca
tTGTTTACTTTTTCACCAATGAATTGACCCCGAAAAAGGTGCTGTTTTGA
AATGTGAACTGTTTTGGTGACTCGTAGTTTAGCAGTCTTGGTGGCCATCG
AATTTTACTTTATGAAACGTCTGTTTTTTATTATGATCTATCTATCATAA
AATGTACTTTTTGGTCTCCGAAAAAACAATTTGCGATCATGTACCAGtat
gatttaaaaaatgacatttaaaaaaaactattgCTCTGTTGTTTTGAATA
GTTTGCATCTTAAGCCAACGGGGAAGTGATGTTAAGTTTAATAAATGTAT
TTTTCATGATTGCCTGTCTTTATCAGCAAACTAAAGAGTtaattctttct
tttgataACTGATCCATGATGGTGATGATAATGATTTCTTAGCATGTGGT
ATAATATAGCATGACGTAATGCGAACAGCAATAAAAGTAAGTAATGGGAT
ATTTTTATCTTTGTAATGCTAATAAGAATTCTATCGTCTTTGAGagtcat
taaaaaaatacagTCTGGGAGTTTTATATGTCGGAGTTTAATATTTCGTT
ATTTTCGTCTTGTAGTATATTTTAGATCTTTAAGTATAATAACATCTTTA
CTTTT Run BLAST on NCBI protein sequence of TCONS_00050799-protein >TCONS_00050799-protein ID=TCONS_00050799-protein|Name=TCONS_00050799-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
MQMVSAAKYSRAERELKPARVYGTGAKALFEKAELESDKTQPNHLIIAIS
SDRGLCGGIHSGISKAIRAKTADSGVDTKLIICGDKARSILQRTHSNDIL
FHMNELGRKPPLFEEASFVAEQVLDSGYEFDSGEMMFNKFNSVVSYSVTE
QDIFSFNSLSTAETMLQYDDVDEDVLRNYHEFSLANIVFYGMKESACSEQ
SARMTAMDNATKNAGDMIDRLRITYNRTRQAVITTELTEIISGCVALETA
D Run BLAST on NCBI transcript from alignment at scaffold_189:88752..95509+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050799 ID=TCONS_00050799|Name=TCONS_00050799|organism=Clytia hemisphaerica|type=transcript|length=6758bp|location=Sequence derived from alignment at scaffold_189:88752..95509+ (Clytia hemisphaerica)
ATTTGCTTATCTCCCCAAGCAAGCAAAACAGTGGATAGTCACAAAATATG
ACAGTGTAAAAAACAGGTCTGAAAATAAcaggaaggtcagaatcacttaT
TGAAATTATAATTTTATTATGATAAGAGGTTGTATACTTTGTGGTATGTT
TGAAACTGCAGTTAAAACCAGACTGACCGGACAAAGTGAAACAGCTAAAA
AATATCTATTTCTGAAGTTCATTGGGCCCAACGTCTTAACTgaatgttat
tgtttttatgtcCAGTGCATTTTGACTTACTTTTTGACGTCAGAAAACAG
CAGCACACTCTCAGGTTTATCAGCAGGGTCATTGAAAAGGCTTTGGCATT
TGAAAAGACTATTAAAGCAGAGGGTGCTGATGGAGTTTCTGAATGCTAGA
AATCCAAAGTTTTCAAGTGATCTTGAACGATTCCTTTATTCCCGTCATTC
CAATTATCGAAAAGTGGGTTACTTAGGGGTGAAGCTACTCATTTTGCCAC
AACAAACATTAATATTAAGGTTCCACCAGACTCTTAAgtttctctagatc
aaaatatTCTTACTCCCATCAATgctaaaagaaaatatatttagaTATAG
GTTGTTGAGAGATATTATGTTAAATAGGGCTATCACCTGAGGTGTCAACC
TGAATTCACAGGACCCAGCAggactttttaactttttttgttaattctat
TCTAATTTGGTTTTACAGGAATGGAGTGAGGTTGTTCAGCTCTACACAGC
CAAAATGTGCAACCTTACAGGATAGTAAGTAACCTACCCTTCCAATTTAT
AATATGGCTTGGTACACACAATATCTGATTGTTTTTAGTTCAAAAGACTA
ATACTATTTTACTGTTTTCAATTCTAGTTCAAATCCGTCTTAAATCCctc
caaaatattcaaaagattACCAAAACTATGCAGATGGTGTCAGCTGCTAA
ATATTCACGTGCAGAACGTGAGCTGAAACCAGCCAGAGTCTATGGCACTG
GAGCCAAAGGTAAGTGGAAAAACTTGACTATTTCAAACTCAGTACATTAG
CAGTTCTGTCGGTCGGTGGTTTTGAAGCGGCTAGAGTTTCCAAATGAGGA
ACTTTAATACTCTGGAAAAGAATATTTCCTGTGCTAGCTTTGTGCACTTT
GGAAATAATCATGGAAATAAAACTGAACCCTCTCGTAAAGAATAGAAGAT
AAATAACATTGACCAGGTATTTAGGAAATTCACCAGGTAACTACTTCCTG
ATTTGGAATAAATTTGCTGaacgaaattcaaaaaaacgaTGGAAAATTCA
AGATAGTGGCCATAAAAAGTAGCAAAATCGGGAAGTTATTCCTTTTTCAG
ACAACGCCATTTCCTCGTTTAATTGAGTTAAGGAAATATGGAAATTCTAG
CCATTTGGGTATTGTTGCACCGGCTGTCGGttgtctcaatttttttttaa
acttgcaTTTCATTATTGTTAGTTTGTAAGATCATAAACTGAGTCGAGCT
CAATTATGAGTGATAAAGTGTTTCAAACTGTTTTTAAATGATGGGAAATA
TTATTAAAATGACACTCGACAACTAAAACAGATCTGAGCTTTCATTATTT
TGTCTTTATCTAAATTATCACACTATTAATATTAAATCATAGCATTATTT
GAAAAAGCTGAATTGGAAAGTGACAAGACTCAACCTAACCATCTGATCAT
TGCTATTTCCTCTGATCGTGGTCTTTGTGGTGGTATCCATTCTGGTATCT
CCAAAGCCATTCGTGCCAAAACTGCTGACTCTGGTGTAGATACTAAATTA
ATTATATGCGGGGACAAAGCAAGAAGCATTTTACAAAGAACTCATAGTAA
GTTACACTGCAGCTTTCtagatattttccttttctctaaTTCCATGTTCT
CAGAGAAATAATAGATACAAGATGCTTGCTTGCAAGCTTGCAAAACTGGG
TTTGTGTTTGAAAGCAGTGTAAGTTATTTTCATTGACAaaccaattttta
ttttgttttgagtgaGATTATTTTTAACCTATAACTTTCTGTTGTTTGAT
AGTGGAATGACATAACGAAAATGTGAACTATTTTTACAACTTTCAGGCAA
TGATATNTTTTTAACCAATAACTTTCTGTTGTTTGATAGTGGAATGACAT
AACGAAAATGTGAACTATTTTTACAACTTTCAGGCAATGATATTCTGTTT
CACATGAATGAGTTGGGCCGTAAACCACCACTTTTTGAAGAAGCCTCATT
TGTTGCGGAACAAGTTTTAGATTCTGGATATGAATTTGATTCTGGTGAAA
TGATGTTCAATAAATTCAAGTAAGTTGCTTTCTTTTACCGCCTATCTCAT
AGCTGATGACATACATTTCATATTTTGCCCTTAAACTTTCCCAGTACTTT
TTTCCCCTTTTACGCAACCATGGATTtgttatagagactctggataaaca
tcaaattgaatgaaacggtggagagcgaagtatttTCTTTCCAtcgtttc
agaaaacaatcgatttACAGGTTTCgcccgcaaaggacaactgtcatggt
gGGTGGAAGGACTCTGATTAACAAAAAAGATTAATACTTTcttatttctc
aaaaatgtttttctagtgtctataataattccttgaTGTAACTAATTATC
TTCCATCAAGACGGACCCTCTATCTAGGTTCAGACTACTGGCACTTATCA
GCAAGCTGGGAAGGTTATAGTTCAAACTGAACTTCAATACAGTGTAGTGC
AACCATTAGACAAACTATAATGCTCGTAATGAATCTGATTCTAACCCATT
AATGctgtatttttatttatttttttatttattctttatttaacgttggt
acaaaacaaaatagtacaaaagacTAATTCAAACCAACATGACAATCTAA
TATTTACTTATAATAGTAAATAATATaggataaaaattctaaaaacatta
aaagattGAGCACAGTTTGCAAgaacaatatatttttgctttcaaaattt
ttgttttaaagcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGCTTCAAGCTATCAGGAAAATGTTGTGATTCAAGACTGTGGTTGAAA
CACGATGTCAGTGTAGGAGCACAAACAAATTTGGCTAACTTTATGATCTT
AGTAGGATCGTATCGATTAATTAAACCTCCTCTTTTTTCCAGCTCTGTTG
TATCATACAGCGTTACTGAACAAGATATCTTCTCTTTCAACAGCTTGAGT
ACTGCTGGTAAGTAGGTGTTGATTAATCAGAAATACTTGTTTGTAAGCAT
CAAAGATCTATCAAAAGAGACTTTTAAATTTAGAGGTATAGCTGGGTATG
GATCCCAAAATGCAGAAAAATAACCATAAGATTGACAATAGATGACTTCT
TTACTAACGTTTTATAGCATGTGCTCACAATGATGTTTTGGGGTGCGAGG
GTTCATTGATTTGCCTGGGTAATAAATAACTAAATAAATTTAAAANATGT
TTTGGGGTGCGAGGGTTCATTGATTTGCCTGGGTAATAAATAACTAAATA
GATTTAAAACCAacattattattaaaaaaaacaaattttatttctATAGA
AACCATGTTACAATATGATGACGTAGATGAAGATGTGTTGCGCAATTACC
ACGAATTCTCCCTTGCCAACATCGTTTTCTATGGAATGAAAGAAAGCGCA
TGCTCAGAACAATCTGCAAGAATGACTGCTATGGACAATGCTACTAAGAA
TGCTGGTATGCTTTTTTGTTATCctctatttttgaagtctcgtTAAATTC
ATCTTCATGAAATGCGCCATGGGATCATCCTCCCAGGAAGATGGGGGAAT
CAACTTTTGCCCTGGAGGgggaaataaatattttcaccTTGATGGGGGGC
TAGTGCAAATGGTGGACTAGTGCAAATGGTGGATTTCAGGAAATTTTATG
GGAAGTGGGGGTAGAGGATAAGtataatatttcaaatagaTGATTAAATG
TGTCTATATTTCCAGCATTTGTGCGTTCATTGCAGGAAATTGTTAAGTTT
TAGTTAAGTTATTATGTAGAATAAAGAGAATCGGTTGGTCACAAAAATAG
TCTTCCAATAGGGGCAACCCTGGAAAAAGGGTAGGTGGGGAAGAAGACCA
AATGGGGGTTTTAGGCCCCTGGAGGACACCATGtagcaccattgcaatgt
cttctagcattacatcacggacccaacagctgattggttgtgacaagtga
cgtattgactgattttatgtcacttacaaccaatcagctgttgggccCAT
TGTGTGATGTCaaagacattgcagtgatgcaAAACATGAATATGCAAGAG
GAAATCTACACGGCGTCAATTTCCAATAGAATTGATTTGAATTTTGCTTT
ACATAAAACCTTTGATTTAAGCTTGATGGCTTCTCTGGGATCTTTGTCCC
TGtaaaaagggtttaaaatttgtaaattcaAAACTAGTTGCAACACGCTT
TCATTTGTTCGGTCAATTTGTCTTGCTTTAAGAATGGcgttttaagtgct
ctttaaaCAGCATTGAGCTCTACCAATTCATAAAAAGATTctgaaataat
tttctttttcataccaCCAGGTGACATGATTGACCGTCTCCGAATCACCT
ACAACAGAACACGTCAAGCCGTCATCACCACAGAATTGACCGAAATCATC
TCTGGTTGTGTTGCCCTAGAAACTGCTGACTAAGCAATAAAAATGTCAAC
ACTAGCAATAttaattataaatatttttaaattttttttggaatcccACA
ACATCGTTTTTTTCCAACCCAACCAAAGTATGAAAATTtgtagaaaatgt
ttttttcaaatttctgttttaaaaattgaccatataaaatttaaaaaact
tcatTGTTTACTTTTTCACCAATGAATTGACCCCGAAAAAGGTGCTGTTT
TGAAATGTGAACTGTTTTGGTGACTCGTAGTTTAGCAGTCTTGGTGGCCA
TCGAATTTTACTTTATGAAACGTCTGTTTTTTATTATGATCTATCTATCA
TAAAATGTACTTTTTGGTCTCCGAAAAAACAATTTGCGATCATGTACCAG
tatgatttaaaaaatgacatttaaaaaaaactattgCTCTGTTGTTTTGA
ATAGTTTGCATCTTAAGCCAACGGGGAAGTGATGTTAAGTTTAATAAATG
TATTTTTCATGATTGCCTGTCTTTATCAGCAAACTAAAGAGTtaattctt
tcttttgataACTGATCCATGATGGTGATGATAATGATTTCTTAGCATGT
GGTATAATATAGCATGACGTAATGCGAACAGCAATAAAAGTAAGTAATGG
GATATTTTTATCTTTGTAATGCTAATAAGAATTCTATCGTCTTTGAGagt
cattaaaaaaatacagTCTGGGAGTTTTATATGTCGGAGTTTAATATTTC
GTTATTTTCGTCTTGTAGTATATTTTAGATCTTTAAGTATAATAACATCT
TTACTTTT Coding sequence (CDS) from alignment at scaffold_189:88752..95509+ >TCONS_00050799 ID=TCONS_00050799|Name=TCONS_00050799|organism=Clytia hemisphaerica|type=CDS|length=4536bp|location=Sequence derived from alignment at scaffold_189:88752..95509+ (Clytia hemisphaerica)
ATGCAGATGGTGTCAGCTGCTAAATATTCACGTGCAGAACGTGAGCTGAA
ACCAGCCAGAGTCTATGGCACTGGAGCCAAAGCATTATTTGAAAAAGCTG
AATTGGAAAGTGACAAGACTCAACCTAACCATCTGATCATTGCTATTTCC
TCTGATCGTGGTCTTTGTGGTGGTATCCATTCTGGTATCTCCAAAGCCAT
TCGTGCCAAAACTGCTGACTCTGGTGTAGATACTAAATTAATTATATGCG
GGGACAAAGCAAGAAGCATTTTACAAAGAACTCATAGCAATGATATTCTG
TTTCACATGAATGAGTTGGGCCGTAAACCACCACTTTTTGAAGAAGCCTC
ATTTGTTGCGGAACAAGTTTTAGATTCTGGATATGAATTTGATTCTGGTG
AAATGATGTTCAATAAATTCAACTCTGTTGTATCATACAGCGTTACTGAA
CAAGATATCTTCTCTTTCAACAGCTTGAGTACTGCTGAAACCATGTTACA
ATATGATGACGTAGATGAAGATGTGTTGCGCAATTACCACGAATTCTCCC
TTGCCAACATCGTTTTCTATGGAATGAAAGAAAGCGCATGCTCAGAACAA
TCTGCAAGAATGACTGCTATGGACAATGCTACTAAGAATGCTGGTGACAT
GATTGACCGTCTCCGAATCACCTACAACAGAACACGTCAAGCCGTCATCA
CCACAGAATTGACCGAAATCATCTCTGGTTGTGTTGCCCTAGAAACTGCT
GACTAAATGCAGATGGTGTCAGCTGCTAAATATTCACGTGCAGAACGTGA
GCTGAAACCAGCCAGAGTCTATGGCACTGGAGCCAAAGCATTATTTGAAA
AAGCTGAATTGGAAAGTGACAAGACTCAACCTAACCATCTGATCATTGCT
ATTTCCTCTGATCGTGGTCTTTGTGGTGGTATCCATTCTGGTATCTCCAA
AGCCATTCGTGCCAAAACTGCTGACTCTGGTGTAGATACTAAATTAATTA
TATGCGGGGACAAAGCAAGAAGCATTTTACAAAGAACTCATAGCAATGAT
ATTCTGTTTCACATGAATGAGTTGGGCCGTAAACCACCACTTTTTGAAGA
AGCCTCATTTGTTGCGGAACAAGTTTTAGATTCTGGATATGAATTTGATT
CTGGTGAAATGATGTTCAATAAATTCAACTCTGTTGTATCATACAGCGTT
ACTGAACAAGATATCTTCTCTTTCAACAGCTTGAGTACTGCTGAAACCAT
GTTACAATATGATGACGTAGATGAAGATGTGTTGCGCAATTACCACGAAT
TCTCCCTTGCCAACATCGTTTTCTATGGAATGAAAGAAAGCGCATGCTCA
GAACAATCTGCAAGAATGACTGCTATGGACAATGCTACTAAGAATGCTGG
TGACATGATTGACCGTCTCCGAATCACCTACAACAGAACACGTCAAGCCG
TCATCACCACAGAATTGACCGAAATCATCTCTGGTTGTGTTGCCCTAGAA
ACTGCTGACTAAATGCAGATGGTGTCAGCTGCTAAATATTCACGTGCAGA
ACGTGAGCTGAAACCAGCCAGAGTCTATGGCACTGGAGCCAAAGCATTAT
TTGAAAAAGCTGAATTGGAAAGTGACAAGACTCAACCTAACCATCTGATC
ATTGCTATTTCCTCTGATCGTGGTCTTTGTGGTGGTATCCATTCTGGTAT
CTCCAAAGCCATTCGTGCCAAAACTGCTGACTCTGGTGTAGATACTAAAT
TAATTATATGCGGGGACAAAGCAAGAAGCATTTTACAAAGAACTCATAGC
AATGATATTCTGTTTCACATGAATGAGTTGGGCCGTAAACCACCACTTTT
TGAAGAAGCCTCATTTGTTGCGGAACAAGTTTTAGATTCTGGATATGAAT
TTGATTCTGGTGAAATGATGTTCAATAAATTCAACTCTGTTGTATCATAC
AGCGTTACTGAACAAGATATCTTCTCTTTCAACAGCTTGAGTACTGCTGA
AACCATGTTACAATATGATGACGTAGATGAAGATGTGTTGCGCAATTACC
ACGAATTCTCCCTTGCCAACATCGTTTTCTATGGAATGAAAGAAAGCGCA
TGCTCAGAACAATCTGCAAGAATGACTGCTATGGACAATGCTACTAAGAA
TGCTGGTGACATGATTGACCGTCTCCGAATCACCTACAACAGAACACGTC
AAGCCGTCATCACCACAGAATTGACCGAAATCATCTCTGGTTGTGTTGCC
CTAGAAACTGCTGACTAAATGCAGATGGTGTCAGCTGCTAAATATTCACG
TGCAGAACGTGAGCTGAAACCAGCCAGAGTCTATGGCACTGGAGCCAAAG
CATTATTTGAAAAAGCTGAATTGGAAAGTGACAAGACTCAACCTAACCAT
CTGATCATTGCTATTTCCTCTGATCGTGGTCTTTGTGGTGGTATCCATTC
TGGTATCTCCAAAGCCATTCGTGCCAAAACTGCTGACTCTGGTGTAGATA
CTAAATTAATTATATGCGGGGACAAAGCAAGAAGCATTTTACAAAGAACT
CATAGCAATGATATTCTGTTTCACATGAATGAGTTGGGCCGTAAACCACC
ACTTTTTGAAGAAGCCTCATTTGTTGCGGAACAAGTTTTAGATTCTGGAT
ATGAATTTGATTCTGGTGAAATGATGTTCAATAAATTCAACTCTGTTGTA
TCATACAGCGTTACTGAACAAGATATCTTCTCTTTCAACAGCTTGAGTAC
TGCTGAAACCATGTTACAATATGATGACGTAGATGAAGATGTGTTGCGCA
ATTACCACGAATTCTCCCTTGCCAACATCGTTTTCTATGGAATGAAAGAA
AGCGCATGCTCAGAACAATCTGCAAGAATGACTGCTATGGACAATGCTAC
TAAGAATGCTGGTGACATGATTGACCGTCTCCGAATCACCTACAACAGAA
CACGTCAAGCCGTCATCACCACAGAATTGACCGAAATCATCTCTGGTTGT
GTTGCCCTAGAAACTGCTGACTAAATGCAGATGGTGTCAGCTGCTAAATA
TTCACGTGCAGAACGTGAGCTGAAACCAGCCAGAGTCTATGGCACTGGAG
CCAAAGCATTATTTGAAAAAGCTGAATTGGAAAGTGACAAGACTCAACCT
AACCATCTGATCATTGCTATTTCCTCTGATCGTGGTCTTTGTGGTGGTAT
CCATTCTGGTATCTCCAAAGCCATTCGTGCCAAAACTGCTGACTCTGGTG
TAGATACTAAATTAATTATATGCGGGGACAAAGCAAGAAGCATTTTACAA
AGAACTCATAGCAATGATATTCTGTTTCACATGAATGAGTTGGGCCGTAA
ACCACCACTTTTTGAAGAAGCCTCATTTGTTGCGGAACAAGTTTTAGATT
CTGGATATGAATTTGATTCTGGTGAAATGATGTTCAATAAATTCAACTCT
GTTGTATCATACAGCGTTACTGAACAAGATATCTTCTCTTTCAACAGCTT
GAGTACTGCTGAAACCATGTTACAATATGATGACGTAGATGAAGATGTGT
TGCGCAATTACCACGAATTCTCCCTTGCCAACATCGTTTTCTATGGAATG
AAAGAAAGCGCATGCTCAGAACAATCTGCAAGAATGACTGCTATGGACAA
TGCTACTAAGAATGCTGGTGACATGATTGACCGTCTCCGAATCACCTACA
ACAGAACACGTCAAGCCGTCATCACCACAGAATTGACCGAAATCATCTCT
GGTTGTGTTGCCCTAGAAACTGCTGACTAAATGCAGATGGTGTCAGCTGC
TAAATATTCACGTGCAGAACGTGAGCTGAAACCAGCCAGAGTCTATGGCA
CTGGAGCCAAAGCATTATTTGAAAAAGCTGAATTGGAAAGTGACAAGACT
CAACCTAACCATCTGATCATTGCTATTTCCTCTGATCGTGGTCTTTGTGG
TGGTATCCATTCTGGTATCTCCAAAGCCATTCGTGCCAAAACTGCTGACT
CTGGTGTAGATACTAAATTAATTATATGCGGGGACAAAGCAAGAAGCATT
TTACAAAGAACTCATAGCAATGATATTCTGTTTCACATGAATGAGTTGGG
CCGTAAACCACCACTTTTTGAAGAAGCCTCATTTGTTGCGGAACAAGTTT
TAGATTCTGGATATGAATTTGATTCTGGTGAAATGATGTTCAATAAATTC
AACTCTGTTGTATCATACAGCGTTACTGAACAAGATATCTTCTCTTTCAA
CAGCTTGAGTACTGCTGAAACCATGTTACAATATGATGACGTAGATGAAG
ATGTGTTGCGCAATTACCACGAATTCTCCCTTGCCAACATCGTTTTCTAT
GGAATGAAAGAAAGCGCATGCTCAGAACAATCTGCAAGAATGACTGCTAT
GGACAATGCTACTAAGAATGCTGGTGACATGATTGACCGTCTCCGAATCA
CCTACAACAGAACACGTCAAGCCGTCATCACCACAGAATTGACCGAAATC
ATCTCTGGTTGTGTTGCCCTAGAAACTGCTGACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050799-exon-scaffold_189-1491911889:88752..89525 | TCONS_00050799-exon-scaffold_189-1491911889:88752..89525 | Clytia hemisphaerica | exon |
| TCONS_00050799-exon-scaffold_189-1510915933:88752..89525 | TCONS_00050799-exon-scaffold_189-1510915933:88752..89525 | Clytia hemisphaerica | exon |
| TCONS_00050799-exon-scaffold_189-1575043694:88752..89525 | TCONS_00050799-exon-scaffold_189-1575043694:88752..89525 | Clytia hemisphaerica | exon |
| TCONS_00050799-exon-scaffold_189-1491911889:89629..89760 | TCONS_00050799-exon-scaffold_189-1491911889:89629..89760 | Clytia hemisphaerica | exon |
| TCONS_00050799-exon-scaffold_189-1510915933:89629..89760 | TCONS_00050799-exon-scaffold_189-1510915933:89629..89760 | Clytia hemisphaerica | exon |
| TCONS_00050799-exon-scaffold_189-1575043694:89629..89760 | TCONS_00050799-exon-scaffold_189-1575043694:89629..89760 | Clytia hemisphaerica | exon |
| TCONS_00050799-exon-scaffold_189-1491911889:90394..90597 | TCONS_00050799-exon-scaffold_189-1491911889:90394..90597 | Clytia hemisphaerica | exon |
| TCONS_00050799-exon-scaffold_189-1510915933:90394..90597 | TCONS_00050799-exon-scaffold_189-1510915933:90394..90597 | Clytia hemisphaerica | exon |
| TCONS_00050799-exon-scaffold_189-1575043694:90394..90597 | TCONS_00050799-exon-scaffold_189-1575043694:90394..90597 | Clytia hemisphaerica | exon |
| TCONS_00050799-exon-scaffold_189-1491911889:90935..91070 | TCONS_00050799-exon-scaffold_189-1491911889:90935..91070 | Clytia hemisphaerica | exon |
| TCONS_00050799-exon-scaffold_189-1510915933:90935..91070 | TCONS_00050799-exon-scaffold_189-1510915933:90935..91070 | Clytia hemisphaerica | exon |
| TCONS_00050799-exon-scaffold_189-1575043694:90935..91070 | TCONS_00050799-exon-scaffold_189-1575043694:90935..91070 | Clytia hemisphaerica | exon |
| TCONS_00050799-exon-scaffold_189-1491911889:93194..93258 | TCONS_00050799-exon-scaffold_189-1491911889:93194..93258 | Clytia hemisphaerica | exon |
| TCONS_00050799-exon-scaffold_189-1510915933:93194..93258 | TCONS_00050799-exon-scaffold_189-1510915933:93194..93258 | Clytia hemisphaerica | exon |
| TCONS_00050799-exon-scaffold_189-1575043694:93194..93258 | TCONS_00050799-exon-scaffold_189-1575043694:93194..93258 | Clytia hemisphaerica | exon |
| TCONS_00050799-exon-scaffold_189-1491911889:93601..93756 | TCONS_00050799-exon-scaffold_189-1491911889:93601..93756 | Clytia hemisphaerica | exon |
| TCONS_00050799-exon-scaffold_189-1510915933:93601..93756 | TCONS_00050799-exon-scaffold_189-1510915933:93601..93756 | Clytia hemisphaerica | exon |
| TCONS_00050799-exon-scaffold_189-1575043694:93601..93756 | TCONS_00050799-exon-scaffold_189-1575043694:93601..93756 | Clytia hemisphaerica | exon |
| TCONS_00050799-exon-scaffold_189-1491911889:94622..95509 | TCONS_00050799-exon-scaffold_189-1491911889:94622..95509 | Clytia hemisphaerica | exon |
| TCONS_00050799-exon-scaffold_189-1510915933:94622..95509 | TCONS_00050799-exon-scaffold_189-1510915933:94622..95509 | Clytia hemisphaerica | exon |
| TCONS_00050799-exon-scaffold_189-1575043694:94622..95509 | TCONS_00050799-exon-scaffold_189-1575043694:94622..95509 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:88752..95509 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000131 | ATP_synth_F1_gsu |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015986 | ATP synthesis coupled proton transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0045261 | proton-transporting ATP synthase complex, catalytic core F(1) |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015986 |
ATP synthesis coupled proton transport |
| cellular_component |
GO:0045261 |
proton-transporting ATP synthase complex, catalytic core F(1) |
| molecular_function |
GO:0046933 |
proton-transporting ATP synthase activity, rotational mechanism |
Blast
BLAST of TCONS_00050799 vs. Swiss-Prot (Human)
Match: ATPG (ATP synthase subunit gamma, mitochondrial OS=Homo sapiens GN=ATP5C1 PE=1 SV=1) HSP 1 Score: 348.206 bits (892), Expect = 9.131e-113 Identity = 168/297 (56.57%), Postives = 225/297 (75.76%), Query Frame = 3
Query: 711 FYRNGVRLFSST--QPKC------ATLQDIQIRLKSLQNIQKITKTMQMVSAAKYSRAERELKPARVYGTGAKALFEKAELESDKTQPNHLIIAISSDRGLCGGIHSGISKAIRAKTAD---SGVDTKLIICGDKARSILQRTHSNDILFHMNELGRKPPLFEEASFVAEQVLDSGYEFDSGEMMFNKFNSVVSYSVTEQDIFSFNSLSTAETMLQYDDVDEDVLRNYHEFSLANIVFYGMKESACSEQSARMTAMDNATKNAGDMIDRLRITYNRTRQAVITTELTEIISGCVALE 1568
F R GV S+ QP+ ATL+DI RLKS++NIQKITK+M+MV+AAKY+RAERELKPAR+YG G+ AL+EKA+++ + + HL+I +SSDRGLCG IHS I+K ++++ A +G + L+ GDK R IL RTHS+ L E+GRKPP F +AS +A ++L+SGYEFD G ++FNKF SV+SY E+ IFS N++++A++M YDD+D DVL+NY E++LANI++Y +KES SEQSARMTAMDNA+KNA +MID+L +T+NRTRQAVIT EL EIISG AL+
Sbjct: 2 FSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298
The following BLAST results are available for this feature:
|
