TCONS_00050804 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050804
Unique NameTCONS_00050804
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1174

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050804 ID=TCONS_00050804|Name=TCONS_00050804|organism=Clytia hemisphaerica|type=transcript|length=1174bp
TATGAAAATATCTATATCATCTCCTATTTCCTTATGATAGGGAGAAAGGG
AAGACAAAGGAAGATTATAGCAATTCGGAATATTCAACATATGGAGATGA
TCGAAGCAGATCTGAGAGCATGTTCGAAGTGGCACGAAAAATTTACATCG
TTGAGAAAAGAGGTTCGATCGATCACAACCTCAATGTTGGTACACCTCCT
GGTAACCAAGGAACACAAACCGAGGACGAACGACCGAAACGAAAAGAAAC
ATGTGATTGTGCTACGTATACCGAACACGATATCCCAACCCTAGTTGCGG
CCTCTATAGGCCAACTCAAGGACCGTAACGACTCCAAAAAAGCGTATCAT
CGGCGCCGAAAGACATGGAATTGGTTTGAATcgtcaaagaaatcaaaagg
aaagaAGTCGTATGATATTGAACAAAAAtctaaagagaaaaatgaaataa
tagaagtcaatttacagaaaatgaagaagatttCACAGACGAGTACAGAG
TCTTTTTCTAACCCTATACATGATGAAATAAAGGCTGAAACGAAATCGAG
GTCTGGGAATAGTAACCAAATCACGATACATACTCAAACTGCTAGTACAG
AAACTAAGGATTTTGATATGGATCTGGATCGTGATATCTTGGAATGCGGG
ATAGATAATGAGGCGTATAGTCGATCAGAATCCGTGAATCTACCTTCACC
TCTACAAGTAACTTAAGATTGTGTTCGTTTGGAAAAGGATGTTTAGAGGT
TCCAATTAAAAAAAAGCAATGAAGGCGTTAACGTCTCGAACAACAGGTTT
GACTATGGTTCAAATCATCGCTTATTATAATGTGTTCCGTGCAGGTCATA
AATAGACAAGCCGTCTGGTCTTGGACCCCGTTTAAAGGTTTAAATTTAAG
AGAGCGATGTCCAAGGCGTCAGCTCCTCAATCAAGGGGTTTGACTATTGT
TCGAATTCTTGCTCCCACTTATATGTTCCGTGCAGTTTATGAATAGCCAA
GCccgctggccgtggaccccttGAAAAATCCTCGATTCCTCGGGTATCCA
CGTAAATAATTGAATGACTCTATCTATTTATTCTAAGTATCCCCGGACTC
TATGCGCCACGGATATGAATTCAGGGGTATATAACAATATGCGGAGTCTC
ACTTTGGAGTATGTGGTTACACNN
Run BLAST on NCBI

transcript from alignment at scaffold_189:214572..217738+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050804 ID=TCONS_00050804|Name=TCONS_00050804|organism=Clytia hemisphaerica|type=transcript|length=3167bp|location=Sequence derived from alignment at scaffold_189:214572..217738+ (Clytia hemisphaerica)
TATGAAAATATCTATATCATCTCCTATTTCCTTATGATAGGGAGAAAGGG AAGACAAAGGAAGATTATAGCAATTCGGAATATTCAACATATGGAGATGA TCGAAGCAGATCTGAGGTACAACATCTTTTAGAATAACACCATGAGAATA CCAAAGCTCAAAATGCTCAAaactaagaacaatttaagacaaCCCTTAGC CTGGAATTAATGAAATTAGTGTCACTACTAGTATGGGAATAGGGATGGTG AAATTTAtcgtttttcattatttttactcaattttattttgttagaattt ggtccaaaaatgctcaaaactaagaacaatttaagacaGCCCTTAGCCTG GAATTAATGAAATTAGTATCACTACTAGTATGGGAATAGGGATGGTGAAA TTTAtcgtttttcattatttttactcaattttattttgttagaatttggt ccaaaaatgctcaaaactaagaacaatttaagacaGCCCTTAGCCTGGAA TTAATGAAATTAGTATCACTACTAGTATGGGAATAGGGATGGTGAAATTT Atcgtttttcattatttttactcaattttattttgttagaatttggtcca aaaatgctcaaaactaagaacaatttaagacaGCCCTTAGCCTGGAATTA ATGAAATTAGTATCACTACTAGTATGGGAATAGGGATGGTGAAATTTAtc gtttttcattatttttactcaattttattttgttagaATTTGGTCCAAGC TATTCCTCATTTGAGGCTtgaagtacacgcttttttacgAGAATATTTAT AATGAAATTGTAATTGGCCaaagaattaagaatatggtaaagaatgtcat ttttatagcattttaccattaaattgccaattatgccCCAACAATGCTAA AAGGTTCCACAAAAATGGCAAATATTTGCTAGAGTTATGCATTGAAAAAC acttataatataaaataagcGTGTGTATCAAGTTTGAAGAAATGccttac tttttactttattGTCCAATAGCGGATGCTAATAGACTAGAGTGTTAACG AAATCTACCTACCTAAATAACTTCTACCTTTTTAACAATTGAAAGCTGTA AATCTATGATTTTAtaaaattcagatttttaaatttacatttgcattttt ttgtaCAGAGCATGTTCGAAGTGGCACGAAAAATTTACATCGTTGAGAAA AGAGGTTCGATCGATCACAACCTCAATGTTGGTACACCTCCTGGTAAGTG TTTAATCTTTTACTTTAATGGGTAGaactttcgcgaggattaaatttcgc ggattacGCGGATTttggtgtcatccgcgaaattaagtcccaatgaaatt tggaagggtctcatccgcaaaatatttctaaacaaaactcaaaatatgtc aaataaatactatttggaatggttacttgcatcaaagaggtgcaaataat gtgtatttcaacaaccaacatgcatgatttgacagtaaaagtcacaaaat cgtgaaaatattaccacccaatacacgtttttttttttataagaacgtca aaagttttcgaagccttcggatgttcttagttttttggatttgaagctta aattcttaaaatgttcttattttaagcattttttgagcattttgatgtaa tttcttaagaaaatgcatgtttttaagtctccaaagccttagaatgttct tagaatgttcttaaatttttgggcctcgaagccttatgttcttatatagt ttgttcttataaacaaaaaaacgtgtagtgcaacccgcgaaattaagtcc ccaaaatttttgaatttcgcggataggctcAACTGCaaaatataatcccc gcgaaggtttatcccattaaagtaagaAATTATATcgcactttcgctttc cataTTTTTGCCTGTTCTGGTTTTCGCACATTTTCGAGTACAATCGAAGA TTAATTACGAGTAACATCAAGAAGTCTATTAATTTGTATTAAAGAGGTGT CTTTCCATCATACAACCAGTACCATTTTTACCATGAACGTTCTGCGTCTC CCCCATAAATGCTGATAATCTTCGTTTTTCTAGATAGCATTCTCAAGACA TTACGAAAAGAAAGCGATATCGACCGCCGCGGTAACGAAATTCGACCGCG CAACAAAACTGAAAATAGTTTCTTAAGCACTGATCTGTCATCAGGTAACC AAGGAACACAAACCGAGGACGAACGACCGAAACGAAAAGAAACATGTGAT TGTGCTACGTATACCGAACACGATATCCCAACCCTAGTTGCGGCCTCTAT AGGCCAACTCAAGGACCGTAACGACTCCAAAAAAGCGTATCATCGGCGCC GAAAGACATGGAATTGGTTTGAATcgtcaaagaaatcaaaaggaaagaAG TCGTATGATATTGAACAAAAAtctaaagagaaaaatgaaataatagaagt caatttacagaaaatgaagaagatttCACAGACGAGTACAGAGTCTTTTT CTAACCCTATACATGATGAAATAAAGGCTGAAACGAAATCGAGGTCTGGG AATAGTAACCAAATCACGATACATACTCAAACTGCTAGTACAGAAACTAA GGATTTTGATATGGATCTGGATCGTGATATCTTGGAATGCGGGATAGATA ATGAGGCGTATAGTCGATCAGAATCCGTGAATCTACCTTCACCTCTACAA GTAACTTAAGATTGTGTTCGTTTGGAAAAGGATGTTTAGAGGTTCCAATT AAAAAAAAGCAATGAAGGCGTTAACGTCTCGAACAACAGGTTTGACTATG GTTCAAATCATCGCTTATTATAATGTGTTCCGTGCAGGTCATAAATAGAC AAGCCGTCTGGTCTTGGACCCCGTTTAAAGGTTTAAATTTAAGAGAGCGA TGTCCAAGGCGTCAGCTCCTCAATCAAGGGGTTTGACTATTGTTCGAATT CTTGCTCCCACTTATATGTTCCGTGCAGTTTATGAATAGCCAAGCccgct ggccgtggaccccttGAAAAATCCTCGATTCCTCGGGTATCCACGTAAAT AATTGAATGACTCTATCTATTTATTCTAAGTATCCCCGGACTCTATGCGC CACGGATATGAATTCAGGGGTATATAACAATATGCGGAGTCTCACTTTGG AGTATGTGGTTACACNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032185XLOC_032185Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050804-exon-scaffold_189-1491911889:214572..214687TCONS_00050804-exon-scaffold_189-1491911889:214572..214687Clytia hemisphaericaexon
TCONS_00050804-exon-scaffold_189-1510915933:214572..214687TCONS_00050804-exon-scaffold_189-1510915933:214572..214687Clytia hemisphaericaexon
TCONS_00050804-exon-scaffold_189-1575043694:214572..214687TCONS_00050804-exon-scaffold_189-1575043694:214572..214687Clytia hemisphaericaexon
TCONS_00050804-exon-scaffold_189-1491911889:215730..215814TCONS_00050804-exon-scaffold_189-1491911889:215730..215814Clytia hemisphaericaexon
TCONS_00050804-exon-scaffold_189-1510915933:215730..215814TCONS_00050804-exon-scaffold_189-1510915933:215730..215814Clytia hemisphaericaexon
TCONS_00050804-exon-scaffold_189-1575043694:215730..215814TCONS_00050804-exon-scaffold_189-1575043694:215730..215814Clytia hemisphaericaexon
TCONS_00050804-exon-scaffold_189-1491911889:216766..217738TCONS_00050804-exon-scaffold_189-1491911889:216766..217738Clytia hemisphaericaexon
TCONS_00050804-exon-scaffold_189-1510915933:216766..217738TCONS_00050804-exon-scaffold_189-1510915933:216766..217738Clytia hemisphaericaexon
TCONS_00050804-exon-scaffold_189-1575043694:216766..217738TCONS_00050804-exon-scaffold_189-1575043694:216766..217738Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_189supercontigscaffold_189:214572..217738 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.110294 0.250958 0 0 0.594948 0.487591 3.09001 1.27304 0.706462 0 1.00568 0.881458 4.16827 4.91679 4.50863 2.51073 1.42284 1.8779 6.82232 4.9231 4.81548 4.45962 1.50834 3.58226 2.69134 2.58262 0.252057 0 3.75358 2.56054
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050804 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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