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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050804 ID=TCONS_00050804|Name=TCONS_00050804|organism=Clytia hemisphaerica|type=transcript|length=1174bp
TATGAAAATATCTATATCATCTCCTATTTCCTTATGATAGGGAGAAAGGG
AAGACAAAGGAAGATTATAGCAATTCGGAATATTCAACATATGGAGATGA
TCGAAGCAGATCTGAGAGCATGTTCGAAGTGGCACGAAAAATTTACATCG
TTGAGAAAAGAGGTTCGATCGATCACAACCTCAATGTTGGTACACCTCCT
GGTAACCAAGGAACACAAACCGAGGACGAACGACCGAAACGAAAAGAAAC
ATGTGATTGTGCTACGTATACCGAACACGATATCCCAACCCTAGTTGCGG
CCTCTATAGGCCAACTCAAGGACCGTAACGACTCCAAAAAAGCGTATCAT
CGGCGCCGAAAGACATGGAATTGGTTTGAATcgtcaaagaaatcaaaagg
aaagaAGTCGTATGATATTGAACAAAAAtctaaagagaaaaatgaaataa
tagaagtcaatttacagaaaatgaagaagatttCACAGACGAGTACAGAG
TCTTTTTCTAACCCTATACATGATGAAATAAAGGCTGAAACGAAATCGAG
GTCTGGGAATAGTAACCAAATCACGATACATACTCAAACTGCTAGTACAG
AAACTAAGGATTTTGATATGGATCTGGATCGTGATATCTTGGAATGCGGG
ATAGATAATGAGGCGTATAGTCGATCAGAATCCGTGAATCTACCTTCACC
TCTACAAGTAACTTAAGATTGTGTTCGTTTGGAAAAGGATGTTTAGAGGT
TCCAATTAAAAAAAAGCAATGAAGGCGTTAACGTCTCGAACAACAGGTTT
GACTATGGTTCAAATCATCGCTTATTATAATGTGTTCCGTGCAGGTCATA
AATAGACAAGCCGTCTGGTCTTGGACCCCGTTTAAAGGTTTAAATTTAAG
AGAGCGATGTCCAAGGCGTCAGCTCCTCAATCAAGGGGTTTGACTATTGT
TCGAATTCTTGCTCCCACTTATATGTTCCGTGCAGTTTATGAATAGCCAA
GCccgctggccgtggaccccttGAAAAATCCTCGATTCCTCGGGTATCCA
CGTAAATAATTGAATGACTCTATCTATTTATTCTAAGTATCCCCGGACTC
TATGCGCCACGGATATGAATTCAGGGGTATATAACAATATGCGGAGTCTC
ACTTTGGAGTATGTGGTTACACNN Run BLAST on NCBI transcript from alignment at scaffold_189:214572..217738+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050804 ID=TCONS_00050804|Name=TCONS_00050804|organism=Clytia hemisphaerica|type=transcript|length=3167bp|location=Sequence derived from alignment at scaffold_189:214572..217738+ (Clytia hemisphaerica)
TATGAAAATATCTATATCATCTCCTATTTCCTTATGATAGGGAGAAAGGG
AAGACAAAGGAAGATTATAGCAATTCGGAATATTCAACATATGGAGATGA
TCGAAGCAGATCTGAGGTACAACATCTTTTAGAATAACACCATGAGAATA
CCAAAGCTCAAAATGCTCAAaactaagaacaatttaagacaaCCCTTAGC
CTGGAATTAATGAAATTAGTGTCACTACTAGTATGGGAATAGGGATGGTG
AAATTTAtcgtttttcattatttttactcaattttattttgttagaattt
ggtccaaaaatgctcaaaactaagaacaatttaagacaGCCCTTAGCCTG
GAATTAATGAAATTAGTATCACTACTAGTATGGGAATAGGGATGGTGAAA
TTTAtcgtttttcattatttttactcaattttattttgttagaatttggt
ccaaaaatgctcaaaactaagaacaatttaagacaGCCCTTAGCCTGGAA
TTAATGAAATTAGTATCACTACTAGTATGGGAATAGGGATGGTGAAATTT
Atcgtttttcattatttttactcaattttattttgttagaatttggtcca
aaaatgctcaaaactaagaacaatttaagacaGCCCTTAGCCTGGAATTA
ATGAAATTAGTATCACTACTAGTATGGGAATAGGGATGGTGAAATTTAtc
gtttttcattatttttactcaattttattttgttagaATTTGGTCCAAGC
TATTCCTCATTTGAGGCTtgaagtacacgcttttttacgAGAATATTTAT
AATGAAATTGTAATTGGCCaaagaattaagaatatggtaaagaatgtcat
ttttatagcattttaccattaaattgccaattatgccCCAACAATGCTAA
AAGGTTCCACAAAAATGGCAAATATTTGCTAGAGTTATGCATTGAAAAAC
acttataatataaaataagcGTGTGTATCAAGTTTGAAGAAATGccttac
tttttactttattGTCCAATAGCGGATGCTAATAGACTAGAGTGTTAACG
AAATCTACCTACCTAAATAACTTCTACCTTTTTAACAATTGAAAGCTGTA
AATCTATGATTTTAtaaaattcagatttttaaatttacatttgcattttt
ttgtaCAGAGCATGTTCGAAGTGGCACGAAAAATTTACATCGTTGAGAAA
AGAGGTTCGATCGATCACAACCTCAATGTTGGTACACCTCCTGGTAAGTG
TTTAATCTTTTACTTTAATGGGTAGaactttcgcgaggattaaatttcgc
ggattacGCGGATTttggtgtcatccgcgaaattaagtcccaatgaaatt
tggaagggtctcatccgcaaaatatttctaaacaaaactcaaaatatgtc
aaataaatactatttggaatggttacttgcatcaaagaggtgcaaataat
gtgtatttcaacaaccaacatgcatgatttgacagtaaaagtcacaaaat
cgtgaaaatattaccacccaatacacgtttttttttttataagaacgtca
aaagttttcgaagccttcggatgttcttagttttttggatttgaagctta
aattcttaaaatgttcttattttaagcattttttgagcattttgatgtaa
tttcttaagaaaatgcatgtttttaagtctccaaagccttagaatgttct
tagaatgttcttaaatttttgggcctcgaagccttatgttcttatatagt
ttgttcttataaacaaaaaaacgtgtagtgcaacccgcgaaattaagtcc
ccaaaatttttgaatttcgcggataggctcAACTGCaaaatataatcccc
gcgaaggtttatcccattaaagtaagaAATTATATcgcactttcgctttc
cataTTTTTGCCTGTTCTGGTTTTCGCACATTTTCGAGTACAATCGAAGA
TTAATTACGAGTAACATCAAGAAGTCTATTAATTTGTATTAAAGAGGTGT
CTTTCCATCATACAACCAGTACCATTTTTACCATGAACGTTCTGCGTCTC
CCCCATAAATGCTGATAATCTTCGTTTTTCTAGATAGCATTCTCAAGACA
TTACGAAAAGAAAGCGATATCGACCGCCGCGGTAACGAAATTCGACCGCG
CAACAAAACTGAAAATAGTTTCTTAAGCACTGATCTGTCATCAGGTAACC
AAGGAACACAAACCGAGGACGAACGACCGAAACGAAAAGAAACATGTGAT
TGTGCTACGTATACCGAACACGATATCCCAACCCTAGTTGCGGCCTCTAT
AGGCCAACTCAAGGACCGTAACGACTCCAAAAAAGCGTATCATCGGCGCC
GAAAGACATGGAATTGGTTTGAATcgtcaaagaaatcaaaaggaaagaAG
TCGTATGATATTGAACAAAAAtctaaagagaaaaatgaaataatagaagt
caatttacagaaaatgaagaagatttCACAGACGAGTACAGAGTCTTTTT
CTAACCCTATACATGATGAAATAAAGGCTGAAACGAAATCGAGGTCTGGG
AATAGTAACCAAATCACGATACATACTCAAACTGCTAGTACAGAAACTAA
GGATTTTGATATGGATCTGGATCGTGATATCTTGGAATGCGGGATAGATA
ATGAGGCGTATAGTCGATCAGAATCCGTGAATCTACCTTCACCTCTACAA
GTAACTTAAGATTGTGTTCGTTTGGAAAAGGATGTTTAGAGGTTCCAATT
AAAAAAAAGCAATGAAGGCGTTAACGTCTCGAACAACAGGTTTGACTATG
GTTCAAATCATCGCTTATTATAATGTGTTCCGTGCAGGTCATAAATAGAC
AAGCCGTCTGGTCTTGGACCCCGTTTAAAGGTTTAAATTTAAGAGAGCGA
TGTCCAAGGCGTCAGCTCCTCAATCAAGGGGTTTGACTATTGTTCGAATT
CTTGCTCCCACTTATATGTTCCGTGCAGTTTATGAATAGCCAAGCccgct
ggccgtggaccccttGAAAAATCCTCGATTCCTCGGGTATCCACGTAAAT
AATTGAATGACTCTATCTATTTATTCTAAGTATCCCCGGACTCTATGCGC
CACGGATATGAATTCAGGGGTATATAACAATATGCGGAGTCTCACTTTGG
AGTATGTGGTTACACNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050804-exon-scaffold_189-1491911889:214572..214687 | TCONS_00050804-exon-scaffold_189-1491911889:214572..214687 | Clytia hemisphaerica | exon |
| TCONS_00050804-exon-scaffold_189-1510915933:214572..214687 | TCONS_00050804-exon-scaffold_189-1510915933:214572..214687 | Clytia hemisphaerica | exon |
| TCONS_00050804-exon-scaffold_189-1575043694:214572..214687 | TCONS_00050804-exon-scaffold_189-1575043694:214572..214687 | Clytia hemisphaerica | exon |
| TCONS_00050804-exon-scaffold_189-1491911889:215730..215814 | TCONS_00050804-exon-scaffold_189-1491911889:215730..215814 | Clytia hemisphaerica | exon |
| TCONS_00050804-exon-scaffold_189-1510915933:215730..215814 | TCONS_00050804-exon-scaffold_189-1510915933:215730..215814 | Clytia hemisphaerica | exon |
| TCONS_00050804-exon-scaffold_189-1575043694:215730..215814 | TCONS_00050804-exon-scaffold_189-1575043694:215730..215814 | Clytia hemisphaerica | exon |
| TCONS_00050804-exon-scaffold_189-1491911889:216766..217738 | TCONS_00050804-exon-scaffold_189-1491911889:216766..217738 | Clytia hemisphaerica | exon |
| TCONS_00050804-exon-scaffold_189-1510915933:216766..217738 | TCONS_00050804-exon-scaffold_189-1510915933:216766..217738 | Clytia hemisphaerica | exon |
| TCONS_00050804-exon-scaffold_189-1575043694:216766..217738 | TCONS_00050804-exon-scaffold_189-1575043694:216766..217738 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:214572..217738 + |
Blast
The following BLAST results are available for this feature:
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