TCONS_00050807 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050807
Unique NameTCONS_00050807
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050807 ID=TCONS_00050807|Name=TCONS_00050807|organism=Clytia hemisphaerica|type=transcript|length=2532bp
CTCTTTTCTGCTCTATATAAAAAGAACTGtatctagaaaataaaattaaa
taaatcaaGTATTTTCCTCTAAACTTCAGCAAAAACAACTACAACTACTG
CTACAagtaaagaaaatatcaaaaccatGGATGGAATGGAAATAAAAGAT
ATGAAGTTAGTGCCATGCACTCAATCTAAATATGTTGTTCCTGGTCGTGT
TACGTTCAATCAGAATGGTCGGCAACGAAAATGGGATTACGTTAAAGTTC
ACGATTCGGTATCCATTTTGATTTACAACAAGACCAGAGATGCATTTGTG
TTGGTAAGACAATTCAGACCAGCACCTTATCTGAACATCAATTCCAAAAT
GTTGAAAGAAGAAGTTTCAgacattgaaaataaatcatctgaaaagaaag
atttcaaaacagTTGCTCCCTTTGAGCTTGGTGTCACTTATGAATTATGT
GCTGGTATAGTTGACCAAAAACGTTCTTTAGTTGAAATAGCACAAAGTGA
AATTGAAGAAGAGACAGGTTATATTGTCCCTTTGGAAAACATCAAACAAA
TATTCAGACATACTGCGACAGGACATTCAGGGAATATGGGTACTGCATTT
TATGCTGAGGTGACAGATGACATGAAAACAGCCAAAGGTGGTGGTGTCCA
AGATTCTGGTGAATTCATTGATCTGTATTACCTACCAAGGACTGATGCTA
AAGATTTTGCTCTTGATGAGAGATATGTAAAGCCTTCAAGCTTCATTGCA
GCCATAatgtggtttttcatcaatcagcaaaaataaataaaaatgaaaaa
taatttttatttaagtttcattttcattttttttgtagtaTTTTGTAATC
aatcagtttgaatgataaaaatcatttttatatttattgGACTGTTAGGG
CTTTTCCTCATTTTATTTTCTTCCTTAGAAATACAAtacaataaaatgaa
aatgcttttgaTCTTTACCTGTAATTTTTAATTAtagaataaacaaaaca
aaacatggAAGAATTAAAAATCAGTGATATGCAACTGGCTCCTTTTGTTG
ACTCCGACGAATTACCAATCGGACGCGTTGCTTTCAAACAGaatgGATGC
AAACGCCTTTGGGATTACGTGGATTACAAAGATCAAATTCAAGCTCTTGT
CTACAACAAAACCAGAGATGCTTTTGTTCTACGCAAAGAATTCAGACCTG
CACCTTATCTGAACATCAATtccaaaatgttaaaagaagaagtttcagac
attgaaaataaatcaTCTGAAAAGAAAGAATTCAAAACAGTTGCTCCCTT
TGAGCTTGGTGTCACTTATGAATTATGTGCTGGTATAGTTGACCAAAAAC
GTCCTCTAGTTGAAATTACAAAAGATGCAATCTCTCAAATGATGGGTTAT
AACGTAGAAGAGAAACAAATCAAGCGAATTTATCAGACCAATCATGTTGG
ATATTCAGGTGACCGATGTGATATATACATTGTGGAAGTGACAGATGAAA
TGttgataaaagatttcaaaccTGATGCTGATCTcgttgaatatttttat
ttgtcaaGGAATGATGCTCAGGAGTTTGCAACGAGTGATGAATACGTGAA
AAATAGTAATGTTATTGCATCTATATTATGGTGTTTCTTGCACAATATCT
TTTGAGCTTGTGGTTGGCTCATAATGTTTCatcattttaaaaagaataat
cAAATATGTTTGAGAGATTCTGCCGAAAGATACTTTGTCGACTAAAACCA
ATAAAATCGAAATCTTTCGAAAAATGTTCAAAGTATGCGAGGGGTCTGGA
GCCTTGTTTATATAAAGAGATTTCGCCAAGGACCTTGGAATGGGTTGCAA
GTTGAAAATTGTAAATAAATATCATGCATTTAAATGTTTTGACTTAATTC
TACATGGGAATCTATCTGGCTTTTCCAATATACAGTGTGtctcaaaaaaa
gtcaaaaaaattttatataaactaaaatcctcataatttgtgccaaattt
tagTCCACGAATACTTATTTTTCAGTATCAAAAACCTTTGCACTCATCTT
TGGGAATTTGgatatctattgattgaacagagaattattgtcttatttca
attattctatACCCAGTTTAGATgttgagttttgaggattttactgTGTA
Ttaaaatttgtccgcttttttttgggacacgctgtaaaattaattttagc
tATTCTTATTTTTACGTAATAATGATATAGTTTGCAAAACATTGAGATAa
acttttctcaattttttttcccaAAGAGATATTATATTATGAAGTTTATG
TATTGACAACATTACTGTAACGACTATTTAATTGCAACAAAGTTGATTTT
GATCTTTTACCAATTGATGTGCATTTATAGGTAATGAATGACGTCAGTTA
AATCAAGATGATGCCAGCACCTTTTCATTAATTACTTCACTCTGTTGTAC
TATGAAAAAtctctattttattttatattttagtatttttcgCAGTAATC
CTTTGGTGGGTTATTGTATTTTATATTTGAAT
Run BLAST on NCBI

transcript from alignment at scaffold_189:247643..252652+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050807 ID=TCONS_00050807|Name=TCONS_00050807|organism=Clytia hemisphaerica|type=transcript|length=5010bp|location=Sequence derived from alignment at scaffold_189:247643..252652+ (Clytia hemisphaerica)
CTCTTTTCTGCTCTATATAAAAAGAACTGtatctagaaaataaaattaaa
taaatcaaGTATTTTCCTCTAAACTTCAGCAAAAACAACTACAACTACTG
CTACAagtaaagaaaatatcaaaaccatGGATGGAATGGAAATAAAAGAT
ATGAAGTTAGTGCCATGCACTCAATCTAAATATGTTGTTCCTGGTCGTGT
TACGTTCAATCAGGTAAAAATGACAATACAGGATTTGTTTTGTTTCCCAT
AGTGGTTCATTTATGtctgtttttgtatatttttggatgaaTGAGAtggg
atttttaatttttaagtagAGTTATGATATTTTTCTGTTTAACTTGGCTT
TTATCTTTACtcaatttttaaagttttctttttttgtcttgAATCGGGAT
TCTTTCTCTATTTCTCCTCAAAACTTGAAAGATACAAAGGAATGTGTATT
GCATTGAAGTTTGGATTTGTATTGTTTGCATTAActcaaaaatttttctt
cactCTTTTCTCTTAGAATGGTCGGCAACGAAAATGGGATTACGTTAAAG
TTCACGATTCGTAGGTTTCCTTTCTCTTAAACatagtattcatgatatgc
accctTGCAATGTCTTCACACGTCGCATTGCGTAATATTACGTAATCTGT
TCTTGCCGCCATGTTGGTTTGAATAAAAAATCCGCGGCAAAATAATCAGG
TGGCAAATTCAATGTGTTTTGTCTCCCAAACCCTTAAAATACACCCAGAC
CCCTACCTCTCCTTTCTGGGAACTTGATATCTCAAAATTCAGATTTTACA
AGTCACGTCAAATAACATGAAGATAGCAGGTGCATCCGATATTTCTAAGA
TATTCTGCACAATGAAAAGAATAAGAAGATTATGATGAATTCTATTGCTT
TTTTACCTCAAATGATCGATCTGTGtaccaaataaaaaaagaattcctTT
AATCAAAGAACTCGACGGTTGTCCTGGAATAATTAAATTATACTCTTATT
TATTAGCACTTACTTTTTCATTATCATATAATTTAGGGTATCCATTTTGA
TTTACAACAAGACCAGAGATGCATTTGTGTTGGTAAGACAATTCAGACCA
GGTAAAAGGATTAAGTTCACATAATTTTTACTCTCCCGCAGTGTGATGAT
GGGTCTTTCCTTTgaatcaaacaaaaatatacAAACTGGCACCAATTTTG
ACCTGTTAATACAAACTTGTTGCCATTATTGTAGGTTTATGCTAACAAAT
CTAGCTCCTAAGAGGCCTTGTTAAcataaaaaggtcaaattaGAAAGATA
CTGTATACACTTCTTAATACTTGGAACGTTGAACCTTGCGTCAATTTCTT
GGTGCGAGCATTGTGGGGCAACTTACTGTCAACCGGATATGCCATTTTAT
CATAAAGAAAGCCGGTCATGATTAATAATAGATATAATAGATCTTTTTCA
CGCGCAATGCTTACCTCGTTTACtaaatattgctatggtaactAATTGAA
GATTCGAAGAGGAGTTCGTGAGAAGTTTACTCtataaacaaaattaacaa
tTGAAGACTTTCAGAgagtcgttgcactcaaaatattttatgaaacaaTT
AGTTTTTATTACTTGTTTTCGTTCTTACGTTGATCATCAATCACGATAAA
AACCTTCTTCGTGTTCTTGTAATTCCAGCACCTTATCTGAACATCAATTC
CAAAATGTTGAAAGAAGAAGTTTCAgacattgaaaataaatcatctgaaa
agaaagatttcaaaacagTTGCTCCCTTTGAGCTTGGTGTCACTTATGAA
TTATGTGCTGGTATAGTTGACCAAAAACGTTCTTTAGTTGAAATAGCACA
AAGTGAAATTGAAGAAGAGACAGGTTATATTGTCCCTTTGGAAAACATCA
AACAAATATTCAGACATACTGCGACAGGACATTCAGGGAATATGGGTACT
GCATTTTATGCTGAGGTGACAGATGACATGAAAACAGCCAAAGGTGGTGG
TGTCCAAGATTCTGGTGAATTCATTGATCTGTATTACCTACCAAGGACTG
ATGCTAAAGATTTTGCTCTTGATGAGAGATATGTAAAGCCTTCAAGCTTC
ATTGCAGCCATAatgtggtttttcatcaatcagcaaaaataaataaaaat
gaaaaataatttttatttaagtttcattttcattttttttgtagtaTTTT
GTAATCaatcagtttgaatgataaaaatcatttttatatttattgGACTG
TTAGGGCTTTTCCTCATTTTATTTTCTTCCTTAGAAATACAAtacaataa
aatgaaaatgcttttgaTCTTTACCTGTAATTTTTAATTAtagaataaac
aaaacaaaacatggAAGAATTAAAAATCAGTGATATGCAACTGGCTCCTT
TTGTTGACTCCGACGAATTACCAATCGGACGCGTTGCTTTCAAACAGGTG
AAACCAGTTAATAGTGGGTGTTCATTGAAAAAGGGAAATTATATAAATGC
AAATTCTGATAATTATGTCCTaacttttcaatttatttttcgaaaatcca
ttATCATTACATTAAGAGTTGAATATCTCTTGAACAAAGAGCTTCCATCt
ttatatttataatttttcgTTACTCCAGTGagacaataaattttgagaat
tttaatcTGTTCCCACGTTATTCCAAAAACAATCAATctcttattattat
tatttgacGAAAGTTTTCTTTTAGGTAGATTTACATAGAATTCCCATTTC
CGATCAAGATCTCCAAATTTTTATAAAGCTGAtgaaaatcaatgtttttt
ttctttcagaatgGATGCAAACGCCTTTGGGATTACGTGGATTACAAAGA
TCAGTAAGCACTCGTGACAGCGTAttccacagatatcttatatgaaacaa
tagatagagctactctgtatttccctAGCAACAACAGTTGAcgcaaaata
atgcgccatcgTTGCTGAAAGTAGACcacagttcggtaccggcaatttgc
TCAAGCAAAATCATTGAATTCCAAAGTCTATCGGCGCGAAAATGATTTAA
TGTCGACTTTTGCATATGATTTTGACGAGATATTTAGCATCATTAGTTTA
ACATTCGTTCTTTTATCTTAGAATTCAAGCTCTTGTCTACAACAAAACCA
GAGATGCTTTTGTTCTACGCAAAGAATTCAGACCTGGTATGAAAAATGTA
TTAAATTATAATCGGAAAGTGATGAGATTGAACAAGTTCCTTTCTTTCTC
TCTCCCACTTTCAACGGAATTCGGCATTTTAGTTGCTGTACATCTTCTTA
TCCAATCTACAGGGTGTCCTTTTAAAAAAGTACTTTGTCAGACCACTTCT
TAGTTCTATAAGTAGAAGAATAATAAGAAGTTTCTTCTAAATACAGATCA
CAATAATGCAACAATGAAGCACAAAAGGTAGAGATTAACATTGTGATTAC
CGTAATAAAATAATTAACATTTCATTCAATGAATgtcttttttaaaaaac
aattaaagATCGAAGTAATTAAAAAGagtactttttatatttttgattgt
GATACAAAcgcaaatattttttcaataacgATTTTCAGGACACCCTGTAG
TGTGAATCCATATCCTTGTACTTTGCGAGTTTGGAGAAATACTCCAGGTA
ATTTTTTGTCTATTCCTTTTATTTACAGCACCTTATCTGAACATCAATtc
caaaatgttaaaagaagaagtttcagacattgaaaataaatcaTCTGAAA
AGAAAGAATTCAAAACAGTTGCTCCCTTTGAGCTTGGTGTCACTTATGAA
TTATGTGCTGGTATAGTTGACCAAAAACGTCCTCTAGTTGAAATTACAAA
AGATGCAATCTCTCAAATGATGGGTTATAACGTAGAAGAGAAACAAATCA
AGCGAATTTATCAGACCAATCATGTTGGATATTCAGGTGACCGATGTGAT
ATATACATTGTGGAAGTGACAGATGAAATGttgataaaagatttcaaacc
TGATGCTGATCTcgttgaatatttttatttgtcaaGGAATGATGCTCAGG
AGTTTGCAACGAGTGATGAATACGTGAAAAATAGTAATGTTATTGCATCT
ATATTATGGTGTTTCTTGCACAATATCTTTTGAGCTTGTGGTTGGCTCAT
AATGTTTCatcattttaaaaagaataatcAAATATGTTTGAGAGATTCTG
CCGAAAGATACTTTGTCGACTAAAACCAATAAAATCGAAATCTTTCGAAA
AATGTTCAAAGTATGCGAGGGGTCTGGAGCCTTGTTTATATAAAGAGATT
TCGCCAAGGACCTTGGAATGGGTTGCAAGTTGAAAATTGTAAATAAATAT
CATGCATTTAAATGTTTTGACTTAATTCTACATGGGAATCTATCTGGCTT
TTCCAATATACAGTGTGtctcaaaaaaagtcaaaaaaattttatataaac
taaaatcctcataatttgtgccaaattttagTCCACGAATACTTATTTTT
CAGTATCAAAAACCTTTGCACTCATCTTTGGGAATTTGgatatctattga
ttgaacagagaattattgtcttatttcaattattctatACCCAGTTTAGA
TgttgagttttgaggattttactgTGTATtaaaatttgtccgcttttttt
tgggacacgctgtaaaattaattttagctATTCTTATTTTTACGTAATAA
TGATATAGTTTGCAAAACATTGAGATAaacttttctcaattttttttccc
aAAGAGATATTATATTATGAAGTTTATGTATTGACAACATTACTGTAACG
ACTATTTAATTGCAACAAAGTTGATTTTGATCTTTTACCAATTGATGTGC
ATTTATAGGTAATGAATGACGTCAGTTAAATCAAGATGATGCCAGCACCT
TTTCATTAATTACTTCACTCTGTTGTACTATGAAAAAtctctattttatt
ttatattttagtatttttcgCAGTAATCCTTTGGTGGGTTATTGTATTTT
ATATTTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032187XLOC_032187Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050807-exon-scaffold_189-1491911889:247643..247855TCONS_00050807-exon-scaffold_189-1491911889:247643..247855Clytia hemisphaericaexon
TCONS_00050807-exon-scaffold_189-1510915933:247643..247855TCONS_00050807-exon-scaffold_189-1510915933:247643..247855Clytia hemisphaericaexon
TCONS_00050807-exon-scaffold_189-1575043694:247643..247855TCONS_00050807-exon-scaffold_189-1575043694:247643..247855Clytia hemisphaericaexon
TCONS_00050807-exon-scaffold_189-1491911889:248159..248202TCONS_00050807-exon-scaffold_189-1491911889:248159..248202Clytia hemisphaericaexon
TCONS_00050807-exon-scaffold_189-1510915933:248159..248202TCONS_00050807-exon-scaffold_189-1510915933:248159..248202Clytia hemisphaericaexon
TCONS_00050807-exon-scaffold_189-1575043694:248159..248202TCONS_00050807-exon-scaffold_189-1575043694:248159..248202Clytia hemisphaericaexon
TCONS_00050807-exon-scaffold_189-1491911889:248679..248743TCONS_00050807-exon-scaffold_189-1491911889:248679..248743Clytia hemisphaericaexon
TCONS_00050807-exon-scaffold_189-1510915933:248679..248743TCONS_00050807-exon-scaffold_189-1510915933:248679..248743Clytia hemisphaericaexon
TCONS_00050807-exon-scaffold_189-1575043694:248679..248743TCONS_00050807-exon-scaffold_189-1575043694:248679..248743Clytia hemisphaericaexon
TCONS_00050807-exon-scaffold_189-1491911889:249321..250089TCONS_00050807-exon-scaffold_189-1491911889:249321..250089Clytia hemisphaericaexon
TCONS_00050807-exon-scaffold_189-1510915933:249321..250089TCONS_00050807-exon-scaffold_189-1510915933:249321..250089Clytia hemisphaericaexon
TCONS_00050807-exon-scaffold_189-1575043694:249321..250089TCONS_00050807-exon-scaffold_189-1575043694:249321..250089Clytia hemisphaericaexon
TCONS_00050807-exon-scaffold_189-1491911889:250452..250495TCONS_00050807-exon-scaffold_189-1491911889:250452..250495Clytia hemisphaericaexon
TCONS_00050807-exon-scaffold_189-1510915933:250452..250495TCONS_00050807-exon-scaffold_189-1510915933:250452..250495Clytia hemisphaericaexon
TCONS_00050807-exon-scaffold_189-1575043694:250452..250495TCONS_00050807-exon-scaffold_189-1575043694:250452..250495Clytia hemisphaericaexon
TCONS_00050807-exon-scaffold_189-1491911889:250764..250828TCONS_00050807-exon-scaffold_189-1491911889:250764..250828Clytia hemisphaericaexon
TCONS_00050807-exon-scaffold_189-1510915933:250764..250828TCONS_00050807-exon-scaffold_189-1510915933:250764..250828Clytia hemisphaericaexon
TCONS_00050807-exon-scaffold_189-1575043694:250764..250828TCONS_00050807-exon-scaffold_189-1575043694:250764..250828Clytia hemisphaericaexon
TCONS_00050807-exon-scaffold_189-1491911889:251321..252652TCONS_00050807-exon-scaffold_189-1491911889:251321..252652Clytia hemisphaericaexon
TCONS_00050807-exon-scaffold_189-1510915933:251321..252652TCONS_00050807-exon-scaffold_189-1510915933:251321..252652Clytia hemisphaericaexon
TCONS_00050807-exon-scaffold_189-1575043694:251321..252652TCONS_00050807-exon-scaffold_189-1575043694:251321..252652Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_189supercontigscaffold_189:247643..252652 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.5635	30.1653	21.3872	20.5042	8.82904	6.98401	10.1111	10.5176	9.13092	11.1277	11.4607	7.56561	8.83365	6.21648	8.53452	8.36011	9.83978	7.4966	5.57344	6.42333	11.9972	11.4976	17.8342	18.309	9.05302	11.0526	16.655	14.8335	13.5785	11.7592
Blast
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BLAST of TCONS_00050807 vs. Swiss-Prot (Human)
Match: NUD14 (Uridine diphosphate glucose pyrophosphatase OS=Homo sapiens GN=NUDT14 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 3.089e-38
Identity = 73/203 (35.96%), Postives = 115/203 (56.65%), Query Frame = 1 
Query:  166 CTQSKYVVPGRVTFNQNGRQRKWDYVKVHDSVSILIYNKTRDAFVLVRQFRPAPYLNINSKMLKEEVSDIENKSSEKKDFKTVAPFELGVTYELCAGIVDQKR-SLVEIAQSEIEEETGYIVPLENIKQIFRH-TATGHSGNMGTAFYAEVTDDMKTAKGGGVQDSGEFIDLYYLPRTDAKDFALDERYVKPSSFIAAIMWFF 768
            C  S Y+ P  + + QNG Q+ WD++K HDSV++L++N +R + VLV+QFRPA Y     +     ++ ++      ++ +   P   GVT ELCAG+VDQ   SL E+A  E  EE GY +   +++++  + +  G +G+  T FY EVTD  ++  GGG+ + GE I++ +LP   A+ FA D    K    I  + WF 
Sbjct:   12 CAASPYLRPLTLHYRQNGAQKSWDFMKTHDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDG--PRELQPALPGSAGVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAFADDPDIPKTLGVIFGVSWFL 212

HSP 2 Score: 94.3597 bits (233), Expect = 4.239e-21
Identity = 56/194 (28.87%), Postives = 94/194 (48.45%), Query Frame = 3 
Query: 1083 FKQNGCKRLWDYVDYKDQIQALVYNKTRDAFVLRKEFRPAPYLNINSKMLKEEVSDIENKSSEKKEFKTVAPFELGVTYELCAGIVDQKR-PLVEITKDAISQMMGYNVEEKQIKRIYQ-TNHVGYSGDRCDIYIVEVTDEMLI---KDFKPDADLVEYFYLSRNDAQEFATSDEYVKNSNVIASILWCFLHNI 1649
            ++QNG ++ WD++   D +  L++N +R + VL K+FRPA Y     +     ++ ++      +E +   P   GVT ELCAG+VDQ    L E+      +  GY++    ++R+    + VG +G R  ++  EVTD            + +L+E  +L    AQ FA   +  K   VI  + W FL  +
Sbjct:   25 YRQNGAQKSWDFMKTHDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDG--PRELQPALPGSAGVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAFADDPDIPKTLGVIFGVSW-FLSQV 215
The following BLAST results are available for this feature:
BLAST of TCONS_00050807 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NUD143.089e-3835.96Uridine diphosphate glucose pyrophosphatase OS=Hom... [more]
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