|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050807 ID=TCONS_00050807|Name=TCONS_00050807|organism=Clytia hemisphaerica|type=transcript|length=2532bp
CTCTTTTCTGCTCTATATAAAAAGAACTGtatctagaaaataaaattaaa
taaatcaaGTATTTTCCTCTAAACTTCAGCAAAAACAACTACAACTACTG
CTACAagtaaagaaaatatcaaaaccatGGATGGAATGGAAATAAAAGAT
ATGAAGTTAGTGCCATGCACTCAATCTAAATATGTTGTTCCTGGTCGTGT
TACGTTCAATCAGAATGGTCGGCAACGAAAATGGGATTACGTTAAAGTTC
ACGATTCGGTATCCATTTTGATTTACAACAAGACCAGAGATGCATTTGTG
TTGGTAAGACAATTCAGACCAGCACCTTATCTGAACATCAATTCCAAAAT
GTTGAAAGAAGAAGTTTCAgacattgaaaataaatcatctgaaaagaaag
atttcaaaacagTTGCTCCCTTTGAGCTTGGTGTCACTTATGAATTATGT
GCTGGTATAGTTGACCAAAAACGTTCTTTAGTTGAAATAGCACAAAGTGA
AATTGAAGAAGAGACAGGTTATATTGTCCCTTTGGAAAACATCAAACAAA
TATTCAGACATACTGCGACAGGACATTCAGGGAATATGGGTACTGCATTT
TATGCTGAGGTGACAGATGACATGAAAACAGCCAAAGGTGGTGGTGTCCA
AGATTCTGGTGAATTCATTGATCTGTATTACCTACCAAGGACTGATGCTA
AAGATTTTGCTCTTGATGAGAGATATGTAAAGCCTTCAAGCTTCATTGCA
GCCATAatgtggtttttcatcaatcagcaaaaataaataaaaatgaaaaa
taatttttatttaagtttcattttcattttttttgtagtaTTTTGTAATC
aatcagtttgaatgataaaaatcatttttatatttattgGACTGTTAGGG
CTTTTCCTCATTTTATTTTCTTCCTTAGAAATACAAtacaataaaatgaa
aatgcttttgaTCTTTACCTGTAATTTTTAATTAtagaataaacaaaaca
aaacatggAAGAATTAAAAATCAGTGATATGCAACTGGCTCCTTTTGTTG
ACTCCGACGAATTACCAATCGGACGCGTTGCTTTCAAACAGaatgGATGC
AAACGCCTTTGGGATTACGTGGATTACAAAGATCAAATTCAAGCTCTTGT
CTACAACAAAACCAGAGATGCTTTTGTTCTACGCAAAGAATTCAGACCTG
CACCTTATCTGAACATCAATtccaaaatgttaaaagaagaagtttcagac
attgaaaataaatcaTCTGAAAAGAAAGAATTCAAAACAGTTGCTCCCTT
TGAGCTTGGTGTCACTTATGAATTATGTGCTGGTATAGTTGACCAAAAAC
GTCCTCTAGTTGAAATTACAAAAGATGCAATCTCTCAAATGATGGGTTAT
AACGTAGAAGAGAAACAAATCAAGCGAATTTATCAGACCAATCATGTTGG
ATATTCAGGTGACCGATGTGATATATACATTGTGGAAGTGACAGATGAAA
TGttgataaaagatttcaaaccTGATGCTGATCTcgttgaatatttttat
ttgtcaaGGAATGATGCTCAGGAGTTTGCAACGAGTGATGAATACGTGAA
AAATAGTAATGTTATTGCATCTATATTATGGTGTTTCTTGCACAATATCT
TTTGAGCTTGTGGTTGGCTCATAATGTTTCatcattttaaaaagaataat
cAAATATGTTTGAGAGATTCTGCCGAAAGATACTTTGTCGACTAAAACCA
ATAAAATCGAAATCTTTCGAAAAATGTTCAAAGTATGCGAGGGGTCTGGA
GCCTTGTTTATATAAAGAGATTTCGCCAAGGACCTTGGAATGGGTTGCAA
GTTGAAAATTGTAAATAAATATCATGCATTTAAATGTTTTGACTTAATTC
TACATGGGAATCTATCTGGCTTTTCCAATATACAGTGTGtctcaaaaaaa
gtcaaaaaaattttatataaactaaaatcctcataatttgtgccaaattt
tagTCCACGAATACTTATTTTTCAGTATCAAAAACCTTTGCACTCATCTT
TGGGAATTTGgatatctattgattgaacagagaattattgtcttatttca
attattctatACCCAGTTTAGATgttgagttttgaggattttactgTGTA
Ttaaaatttgtccgcttttttttgggacacgctgtaaaattaattttagc
tATTCTTATTTTTACGTAATAATGATATAGTTTGCAAAACATTGAGATAa
acttttctcaattttttttcccaAAGAGATATTATATTATGAAGTTTATG
TATTGACAACATTACTGTAACGACTATTTAATTGCAACAAAGTTGATTTT
GATCTTTTACCAATTGATGTGCATTTATAGGTAATGAATGACGTCAGTTA
AATCAAGATGATGCCAGCACCTTTTCATTAATTACTTCACTCTGTTGTAC
TATGAAAAAtctctattttattttatattttagtatttttcgCAGTAATC
CTTTGGTGGGTTATTGTATTTTATATTTGAAT Run BLAST on NCBI transcript from alignment at scaffold_189:247643..252652+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050807 ID=TCONS_00050807|Name=TCONS_00050807|organism=Clytia hemisphaerica|type=transcript|length=5010bp|location=Sequence derived from alignment at scaffold_189:247643..252652+ (Clytia hemisphaerica)
CTCTTTTCTGCTCTATATAAAAAGAACTGtatctagaaaataaaattaaa
taaatcaaGTATTTTCCTCTAAACTTCAGCAAAAACAACTACAACTACTG
CTACAagtaaagaaaatatcaaaaccatGGATGGAATGGAAATAAAAGAT
ATGAAGTTAGTGCCATGCACTCAATCTAAATATGTTGTTCCTGGTCGTGT
TACGTTCAATCAGGTAAAAATGACAATACAGGATTTGTTTTGTTTCCCAT
AGTGGTTCATTTATGtctgtttttgtatatttttggatgaaTGAGAtggg
atttttaatttttaagtagAGTTATGATATTTTTCTGTTTAACTTGGCTT
TTATCTTTACtcaatttttaaagttttctttttttgtcttgAATCGGGAT
TCTTTCTCTATTTCTCCTCAAAACTTGAAAGATACAAAGGAATGTGTATT
GCATTGAAGTTTGGATTTGTATTGTTTGCATTAActcaaaaatttttctt
cactCTTTTCTCTTAGAATGGTCGGCAACGAAAATGGGATTACGTTAAAG
TTCACGATTCGTAGGTTTCCTTTCTCTTAAACatagtattcatgatatgc
accctTGCAATGTCTTCACACGTCGCATTGCGTAATATTACGTAATCTGT
TCTTGCCGCCATGTTGGTTTGAATAAAAAATCCGCGGCAAAATAATCAGG
TGGCAAATTCAATGTGTTTTGTCTCCCAAACCCTTAAAATACACCCAGAC
CCCTACCTCTCCTTTCTGGGAACTTGATATCTCAAAATTCAGATTTTACA
AGTCACGTCAAATAACATGAAGATAGCAGGTGCATCCGATATTTCTAAGA
TATTCTGCACAATGAAAAGAATAAGAAGATTATGATGAATTCTATTGCTT
TTTTACCTCAAATGATCGATCTGTGtaccaaataaaaaaagaattcctTT
AATCAAAGAACTCGACGGTTGTCCTGGAATAATTAAATTATACTCTTATT
TATTAGCACTTACTTTTTCATTATCATATAATTTAGGGTATCCATTTTGA
TTTACAACAAGACCAGAGATGCATTTGTGTTGGTAAGACAATTCAGACCA
GGTAAAAGGATTAAGTTCACATAATTTTTACTCTCCCGCAGTGTGATGAT
GGGTCTTTCCTTTgaatcaaacaaaaatatacAAACTGGCACCAATTTTG
ACCTGTTAATACAAACTTGTTGCCATTATTGTAGGTTTATGCTAACAAAT
CTAGCTCCTAAGAGGCCTTGTTAAcataaaaaggtcaaattaGAAAGATA
CTGTATACACTTCTTAATACTTGGAACGTTGAACCTTGCGTCAATTTCTT
GGTGCGAGCATTGTGGGGCAACTTACTGTCAACCGGATATGCCATTTTAT
CATAAAGAAAGCCGGTCATGATTAATAATAGATATAATAGATCTTTTTCA
CGCGCAATGCTTACCTCGTTTACtaaatattgctatggtaactAATTGAA
GATTCGAAGAGGAGTTCGTGAGAAGTTTACTCtataaacaaaattaacaa
tTGAAGACTTTCAGAgagtcgttgcactcaaaatattttatgaaacaaTT
AGTTTTTATTACTTGTTTTCGTTCTTACGTTGATCATCAATCACGATAAA
AACCTTCTTCGTGTTCTTGTAATTCCAGCACCTTATCTGAACATCAATTC
CAAAATGTTGAAAGAAGAAGTTTCAgacattgaaaataaatcatctgaaa
agaaagatttcaaaacagTTGCTCCCTTTGAGCTTGGTGTCACTTATGAA
TTATGTGCTGGTATAGTTGACCAAAAACGTTCTTTAGTTGAAATAGCACA
AAGTGAAATTGAAGAAGAGACAGGTTATATTGTCCCTTTGGAAAACATCA
AACAAATATTCAGACATACTGCGACAGGACATTCAGGGAATATGGGTACT
GCATTTTATGCTGAGGTGACAGATGACATGAAAACAGCCAAAGGTGGTGG
TGTCCAAGATTCTGGTGAATTCATTGATCTGTATTACCTACCAAGGACTG
ATGCTAAAGATTTTGCTCTTGATGAGAGATATGTAAAGCCTTCAAGCTTC
ATTGCAGCCATAatgtggtttttcatcaatcagcaaaaataaataaaaat
gaaaaataatttttatttaagtttcattttcattttttttgtagtaTTTT
GTAATCaatcagtttgaatgataaaaatcatttttatatttattgGACTG
TTAGGGCTTTTCCTCATTTTATTTTCTTCCTTAGAAATACAAtacaataa
aatgaaaatgcttttgaTCTTTACCTGTAATTTTTAATTAtagaataaac
aaaacaaaacatggAAGAATTAAAAATCAGTGATATGCAACTGGCTCCTT
TTGTTGACTCCGACGAATTACCAATCGGACGCGTTGCTTTCAAACAGGTG
AAACCAGTTAATAGTGGGTGTTCATTGAAAAAGGGAAATTATATAAATGC
AAATTCTGATAATTATGTCCTaacttttcaatttatttttcgaaaatcca
ttATCATTACATTAAGAGTTGAATATCTCTTGAACAAAGAGCTTCCATCt
ttatatttataatttttcgTTACTCCAGTGagacaataaattttgagaat
tttaatcTGTTCCCACGTTATTCCAAAAACAATCAATctcttattattat
tatttgacGAAAGTTTTCTTTTAGGTAGATTTACATAGAATTCCCATTTC
CGATCAAGATCTCCAAATTTTTATAAAGCTGAtgaaaatcaatgtttttt
ttctttcagaatgGATGCAAACGCCTTTGGGATTACGTGGATTACAAAGA
TCAGTAAGCACTCGTGACAGCGTAttccacagatatcttatatgaaacaa
tagatagagctactctgtatttccctAGCAACAACAGTTGAcgcaaaata
atgcgccatcgTTGCTGAAAGTAGACcacagttcggtaccggcaatttgc
TCAAGCAAAATCATTGAATTCCAAAGTCTATCGGCGCGAAAATGATTTAA
TGTCGACTTTTGCATATGATTTTGACGAGATATTTAGCATCATTAGTTTA
ACATTCGTTCTTTTATCTTAGAATTCAAGCTCTTGTCTACAACAAAACCA
GAGATGCTTTTGTTCTACGCAAAGAATTCAGACCTGGTATGAAAAATGTA
TTAAATTATAATCGGAAAGTGATGAGATTGAACAAGTTCCTTTCTTTCTC
TCTCCCACTTTCAACGGAATTCGGCATTTTAGTTGCTGTACATCTTCTTA
TCCAATCTACAGGGTGTCCTTTTAAAAAAGTACTTTGTCAGACCACTTCT
TAGTTCTATAAGTAGAAGAATAATAAGAAGTTTCTTCTAAATACAGATCA
CAATAATGCAACAATGAAGCACAAAAGGTAGAGATTAACATTGTGATTAC
CGTAATAAAATAATTAACATTTCATTCAATGAATgtcttttttaaaaaac
aattaaagATCGAAGTAATTAAAAAGagtactttttatatttttgattgt
GATACAAAcgcaaatattttttcaataacgATTTTCAGGACACCCTGTAG
TGTGAATCCATATCCTTGTACTTTGCGAGTTTGGAGAAATACTCCAGGTA
ATTTTTTGTCTATTCCTTTTATTTACAGCACCTTATCTGAACATCAATtc
caaaatgttaaaagaagaagtttcagacattgaaaataaatcaTCTGAAA
AGAAAGAATTCAAAACAGTTGCTCCCTTTGAGCTTGGTGTCACTTATGAA
TTATGTGCTGGTATAGTTGACCAAAAACGTCCTCTAGTTGAAATTACAAA
AGATGCAATCTCTCAAATGATGGGTTATAACGTAGAAGAGAAACAAATCA
AGCGAATTTATCAGACCAATCATGTTGGATATTCAGGTGACCGATGTGAT
ATATACATTGTGGAAGTGACAGATGAAATGttgataaaagatttcaaacc
TGATGCTGATCTcgttgaatatttttatttgtcaaGGAATGATGCTCAGG
AGTTTGCAACGAGTGATGAATACGTGAAAAATAGTAATGTTATTGCATCT
ATATTATGGTGTTTCTTGCACAATATCTTTTGAGCTTGTGGTTGGCTCAT
AATGTTTCatcattttaaaaagaataatcAAATATGTTTGAGAGATTCTG
CCGAAAGATACTTTGTCGACTAAAACCAATAAAATCGAAATCTTTCGAAA
AATGTTCAAAGTATGCGAGGGGTCTGGAGCCTTGTTTATATAAAGAGATT
TCGCCAAGGACCTTGGAATGGGTTGCAAGTTGAAAATTGTAAATAAATAT
CATGCATTTAAATGTTTTGACTTAATTCTACATGGGAATCTATCTGGCTT
TTCCAATATACAGTGTGtctcaaaaaaagtcaaaaaaattttatataaac
taaaatcctcataatttgtgccaaattttagTCCACGAATACTTATTTTT
CAGTATCAAAAACCTTTGCACTCATCTTTGGGAATTTGgatatctattga
ttgaacagagaattattgtcttatttcaattattctatACCCAGTTTAGA
TgttgagttttgaggattttactgTGTATtaaaatttgtccgcttttttt
tgggacacgctgtaaaattaattttagctATTCTTATTTTTACGTAATAA
TGATATAGTTTGCAAAACATTGAGATAaacttttctcaattttttttccc
aAAGAGATATTATATTATGAAGTTTATGTATTGACAACATTACTGTAACG
ACTATTTAATTGCAACAAAGTTGATTTTGATCTTTTACCAATTGATGTGC
ATTTATAGGTAATGAATGACGTCAGTTAAATCAAGATGATGCCAGCACCT
TTTCATTAATTACTTCACTCTGTTGTACTATGAAAAAtctctattttatt
ttatattttagtatttttcgCAGTAATCCTTTGGTGGGTTATTGTATTTT
ATATTTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050807-exon-scaffold_189-1491911889:247643..247855 | TCONS_00050807-exon-scaffold_189-1491911889:247643..247855 | Clytia hemisphaerica | exon |
| TCONS_00050807-exon-scaffold_189-1510915933:247643..247855 | TCONS_00050807-exon-scaffold_189-1510915933:247643..247855 | Clytia hemisphaerica | exon |
| TCONS_00050807-exon-scaffold_189-1575043694:247643..247855 | TCONS_00050807-exon-scaffold_189-1575043694:247643..247855 | Clytia hemisphaerica | exon |
| TCONS_00050807-exon-scaffold_189-1491911889:248159..248202 | TCONS_00050807-exon-scaffold_189-1491911889:248159..248202 | Clytia hemisphaerica | exon |
| TCONS_00050807-exon-scaffold_189-1510915933:248159..248202 | TCONS_00050807-exon-scaffold_189-1510915933:248159..248202 | Clytia hemisphaerica | exon |
| TCONS_00050807-exon-scaffold_189-1575043694:248159..248202 | TCONS_00050807-exon-scaffold_189-1575043694:248159..248202 | Clytia hemisphaerica | exon |
| TCONS_00050807-exon-scaffold_189-1491911889:248679..248743 | TCONS_00050807-exon-scaffold_189-1491911889:248679..248743 | Clytia hemisphaerica | exon |
| TCONS_00050807-exon-scaffold_189-1510915933:248679..248743 | TCONS_00050807-exon-scaffold_189-1510915933:248679..248743 | Clytia hemisphaerica | exon |
| TCONS_00050807-exon-scaffold_189-1575043694:248679..248743 | TCONS_00050807-exon-scaffold_189-1575043694:248679..248743 | Clytia hemisphaerica | exon |
| TCONS_00050807-exon-scaffold_189-1491911889:249321..250089 | TCONS_00050807-exon-scaffold_189-1491911889:249321..250089 | Clytia hemisphaerica | exon |
| TCONS_00050807-exon-scaffold_189-1510915933:249321..250089 | TCONS_00050807-exon-scaffold_189-1510915933:249321..250089 | Clytia hemisphaerica | exon |
| TCONS_00050807-exon-scaffold_189-1575043694:249321..250089 | TCONS_00050807-exon-scaffold_189-1575043694:249321..250089 | Clytia hemisphaerica | exon |
| TCONS_00050807-exon-scaffold_189-1491911889:250452..250495 | TCONS_00050807-exon-scaffold_189-1491911889:250452..250495 | Clytia hemisphaerica | exon |
| TCONS_00050807-exon-scaffold_189-1510915933:250452..250495 | TCONS_00050807-exon-scaffold_189-1510915933:250452..250495 | Clytia hemisphaerica | exon |
| TCONS_00050807-exon-scaffold_189-1575043694:250452..250495 | TCONS_00050807-exon-scaffold_189-1575043694:250452..250495 | Clytia hemisphaerica | exon |
| TCONS_00050807-exon-scaffold_189-1491911889:250764..250828 | TCONS_00050807-exon-scaffold_189-1491911889:250764..250828 | Clytia hemisphaerica | exon |
| TCONS_00050807-exon-scaffold_189-1510915933:250764..250828 | TCONS_00050807-exon-scaffold_189-1510915933:250764..250828 | Clytia hemisphaerica | exon |
| TCONS_00050807-exon-scaffold_189-1575043694:250764..250828 | TCONS_00050807-exon-scaffold_189-1575043694:250764..250828 | Clytia hemisphaerica | exon |
| TCONS_00050807-exon-scaffold_189-1491911889:251321..252652 | TCONS_00050807-exon-scaffold_189-1491911889:251321..252652 | Clytia hemisphaerica | exon |
| TCONS_00050807-exon-scaffold_189-1510915933:251321..252652 | TCONS_00050807-exon-scaffold_189-1510915933:251321..252652 | Clytia hemisphaerica | exon |
| TCONS_00050807-exon-scaffold_189-1575043694:251321..252652 | TCONS_00050807-exon-scaffold_189-1575043694:251321..252652 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:247643..252652 + |
Blast
BLAST of TCONS_00050807 vs. Swiss-Prot (Human)
Match: NUD14 (Uridine diphosphate glucose pyrophosphatase OS=Homo sapiens GN=NUDT14 PE=1 SV=2) HSP 1 Score: 144.05 bits (362), Expect = 3.089e-38 Identity = 73/203 (35.96%), Postives = 115/203 (56.65%), Query Frame = 1
Query: 166 CTQSKYVVPGRVTFNQNGRQRKWDYVKVHDSVSILIYNKTRDAFVLVRQFRPAPYLNINSKMLKEEVSDIENKSSEKKDFKTVAPFELGVTYELCAGIVDQKR-SLVEIAQSEIEEETGYIVPLENIKQIFRH-TATGHSGNMGTAFYAEVTDDMKTAKGGGVQDSGEFIDLYYLPRTDAKDFALDERYVKPSSFIAAIMWFF 768
C S Y+ P + + QNG Q+ WD++K HDSV++L++N +R + VLV+QFRPA Y + ++ ++ ++ + P GVT ELCAG+VDQ SL E+A E EE GY + +++++ + + G +G+ T FY EVTD ++ GGG+ + GE I++ +LP A+ FA D K I + WF
Sbjct: 12 CAASPYLRPLTLHYRQNGAQKSWDFMKTHDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDG--PRELQPALPGSAGVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAFADDPDIPKTLGVIFGVSWFL 212 HSP 2 Score: 94.3597 bits (233), Expect = 4.239e-21 Identity = 56/194 (28.87%), Postives = 94/194 (48.45%), Query Frame = 3
Query: 1083 FKQNGCKRLWDYVDYKDQIQALVYNKTRDAFVLRKEFRPAPYLNINSKMLKEEVSDIENKSSEKKEFKTVAPFELGVTYELCAGIVDQKR-PLVEITKDAISQMMGYNVEEKQIKRIYQ-TNHVGYSGDRCDIYIVEVTDEMLI---KDFKPDADLVEYFYLSRNDAQEFATSDEYVKNSNVIASILWCFLHNI 1649
++QNG ++ WD++ D + L++N +R + VL K+FRPA Y + ++ ++ +E + P GVT ELCAG+VDQ L E+ + GY++ ++R+ + VG +G R ++ EVTD + +L+E +L AQ FA + K VI + W FL +
Sbjct: 25 YRQNGAQKSWDFMKTHDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDG--PRELQPALPGSAGVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAFADDPDIPKTLGVIFGVSW-FLSQV 215
The following BLAST results are available for this feature:
|
