|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050809 ID=TCONS_00050809|Name=TCONS_00050809|organism=Clytia hemisphaerica|type=transcript|length=2126bp AGCAAAAACAACTACAACTACTGCTACAagtaaagaaaatatcaaaacca tGGATGGAATGGAAATAAAAGATATGAAGTTAGTGCCATGCACTCAATCT AAATATGTTGTTCCTGGTCGTGTTACGTTCAATCAGAATGGTCGGCAACG AAAATGGGATTACGTTAAAGTTCACGATTCGGTATCCATTTTGATTTACA ACAAGACCAGAGATGCATTTGTGTTGGTAAGACAATTCAGACCAGCACCT TATCTGAACATCAATTCCAAAATGTTGAAAGAAGAAGTTTCAgacattga aaataaatcatctgaaaagaaagatttcaaaacagTTGCTCCCTTTGAGC TTGGTGTCACTTATGAATTATGTGCTGGTATAGTTGACCAAAAACGTTCT TTAGTTGAAATAGCACAAAGTGAAATTGAAGAAGAGACAGGTTATATTGT CCCTTTGGAAAACATCAAACAAATATTCAGACATACTGCGACAGGACATT CAGGGAATATGGGTACTGCATTTTATGCTGAGGTGACAGATGACATGAAA ACAGCCAAAGGTGGTGGTGTCCAAGATTCTGaataaacaaaacaaaacat ggAAGAATTAAAAATCAGTGATATGCAACTGGCTCCTTTTGTTGACTCCG ACGAATTACCAATCGGACGCGTTGCTTTCAAACAGaatgGATGCAAACGC CTTTGGGATTACGTGGATTACAAAGATCAAATTCAAGCTCTTGTCTACAA CAAAACCAGAGATGCTTTTGTTCTACGCAAAGAATTCAGACCTGCACCTT ATCTGAACATCAATtccaaaatgttaaaagaagaagtttcagacattgaa aataaatcaTCTGAAAAGAAAGAATTCAAAACAGTTGCTCCCTTTGAGCT TGGTGTCACTTATGAATTATGTGCTGGTATAGTTGACCAAAAACGTCCTC TAGTTGAAATTACAAAAGATGCAATCTCTCAAATGATGGGTTATAACGTA GAAGAGAAACAAATCAAGCGAATTTATCAGACCAATCATGTTGGATATTC AGGTGACCGATGTGATATATACATTGTGGAAGTGACAGATGAAATGttga taaaagatttcaaaccTGATGCTGATCTcgttgaatatttttatttgtca aGGAATGATGCTCAGGAGTTTGCAACGAGTGATGAATACGTGAAAAATAG TAATGTTATTGCATCTATATTATGGTGTTTCTTGCACAATATCTTTTGAG CTTGTGGTTGGCTCATAATGTTTCatcattttaaaaagaataatcAAATA TGTTTGAGAGATTCTGCCGAAAGATACTTTGTCGACTAAAACCAATAAAA TCGAAATCTTTCGAAAAATGTTCAAAGTATGCGAGGGGTCTGGAGCCTTG TTTATATAAAGAGATTTCGCCAAGGACCTTGGAATGGGTTGCAAGTTGAA AATTGTAAATAAATATCATGCATTTAAATGTTTTGACTTAATTCTACATG GGAATCTATCTGGCTTTTCCAATATACAGTGTGtctcaaaaaaagtcaaa aaaattttatataaactaaaatcctcataatttgtgccaaattttagTCC ACGAATACTTATTTTTCAGTATCAAAAACCTTTGCACTCATCTTTGGGAA TTTGgatatctattgattgaacagagaattattgtcttatttcaattatt ctatACCCAGTTTAGATgttgagttttgaggattttactgTGTATtaaaa tttgtccgcttttttttgggacacgctgtaaaattaattttagctATTCT TATTTTTACGTAATAATGATATAGTTTGCAAAACATTGAGATAaactttt ctcaattttttttcccaAAGAGATATTATATTATGAAGTTTATGTATTGA CAACATTACTGTAACGACTATTTAATTGCAACAAAGTTGATTTTGATCTT TTACCAATTGATGTGCATTTATAGGTAATGAATGACGTCAGTTAAATCAA GATGATGCCAGCACCTTTTCATTAATTACTTCACTCTGTTGTACTATGAA AAAtctctattttattttatattttagtatttttcgCAGTAATCCTTTGG TGGGTTATTGTATTTTATATTTGAAT Run BLAST on NCBI protein sequence of TCONS_00050809-protein >TCONS_00050809-protein ID=TCONS_00050809-protein|Name=TCONS_00050809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MEELKISDMQLAPFVDSDELPIGRVAFKQNGCKRLWDYVDYKDQIQALVY NKTRDAFVLRKEFRPAPYLNINSKMLKEEVSDIENKSSEKKEFKTVAPFE LGVTYELCAGIVDQKRPLVEITKDAISQMMGYNVEEKQIKRIYQTNHVGY SGDRCDIYIVEVTDEMLIKDFKPDADLVEYFYLSRNDAQEFATSDEYVKN SNVIASILWCFLHNIF Run BLAST on NCBI transcript from alignment at scaffold_189:247720..252652+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050809 ID=TCONS_00050809|Name=TCONS_00050809|organism=Clytia hemisphaerica|type=transcript|length=4933bp|location=Sequence derived from alignment at scaffold_189:247720..252652+ (Clytia hemisphaerica) AGCAAAAACAACTACAACTACTGCTACAagtaaagaaaatatcaaaacca
tGGATGGAATGGAAATAAAAGATATGAAGTTAGTGCCATGCACTCAATCT
AAATATGTTGTTCCTGGTCGTGTTACGTTCAATCAGGTAAAAATGACAAT
ACAGGATTTGTTTTGTTTCCCATAGTGGTTCATTTATGtctgtttttgta
tatttttggatgaaTGAGAtgggatttttaatttttaagtagAGTTATGA
TATTTTTCTGTTTAACTTGGCTTTTATCTTTACtcaatttttaaagtttt
ctttttttgtcttgAATCGGGATTCTTTCTCTATTTCTCCTCAAAACTTG
AAAGATACAAAGGAATGTGTATTGCATTGAAGTTTGGATTTGTATTGTTT
GCATTAActcaaaaatttttcttcactCTTTTCTCTTAGAATGGTCGGCA
ACGAAAATGGGATTACGTTAAAGTTCACGATTCGTAGGTTTCCTTTCTCT
TAAACatagtattcatgatatgcaccctTGCAATGTCTTCACACGTCGCA
TTGCGTAATATTACGTAATCTGTTCTTGCCGCCATGTTGGTTTGAATAAA
AAATCCGCGGCAAAATAATCAGGTGGCAAATTCAATGTGTTTTGTCTCCC
AAACCCTTAAAATACACCCAGACCCCTACCTCTCCTTTCTGGGAACTTGA
TATCTCAAAATTCAGATTTTACAAGTCACGTCAAATAACATGAAGATAGC
AGGTGCATCCGATATTTCTAAGATATTCTGCACAATGAAAAGAATAAGAA
GATTATGATGAATTCTATTGCTTTTTTACCTCAAATGATCGATCTGTGta
ccaaataaaaaaagaattcctTTAATCAAAGAACTCGACGGTTGTCCTGG
AATAATTAAATTATACTCTTATTTATTAGCACTTACTTTTTCATTATCAT
ATAATTTAGGGTATCCATTTTGATTTACAACAAGACCAGAGATGCATTTG
TGTTGGTAAGACAATTCAGACCAGGTAAAAGGATTAAGTTCACATAATTT
TTACTCTCCCGCAGTGTGATGATGGGTCTTTCCTTTgaatcaaacaaaaa
tatacAAACTGGCACCAATTTTGACCTGTTAATACAAACTTGTTGCCATT
ATTGTAGGTTTATGCTAACAAATCTAGCTCCTAAGAGGCCTTGTTAAcat
aaaaaggtcaaattaGAAAGATACTGTATACACTTCTTAATACTTGGAAC
GTTGAACCTTGCGTCAATTTCTTGGTGCGAGCATTGTGGGGCAACTTACT
GTCAACCGGATATGCCATTTTATCATAAAGAAAGCCGGTCATGATTAATA
ATAGATATAATAGATCTTTTTCACGCGCAATGCTTACCTCGTTTACtaaa
tattgctatggtaactAATTGAAGATTCGAAGAGGAGTTCGTGAGAAGTT
TACTCtataaacaaaattaacaatTGAAGACTTTCAGAgagtcgttgcac
tcaaaatattttatgaaacaaTTAGTTTTTATTACTTGTTTTCGTTCTTA
CGTTGATCATCAATCACGATAAAAACCTTCTTCGTGTTCTTGTAATTCCA
GCACCTTATCTGAACATCAATTCCAAAATGTTGAAAGAAGAAGTTTCAga
cattgaaaataaatcatctgaaaagaaagatttcaaaacagTTGCTCCCT
TTGAGCTTGGTGTCACTTATGAATTATGTGCTGGTATAGTTGACCAAAAA
CGTTCTTTAGTTGAAATAGCACAAAGTGAAATTGAAGAAGAGACAGGTTA
TATTGTCCCTTTGGAAAACATCAAACAAATATTCAGACATACTGCGACAG
GACATTCAGGGAATATGGGTACTGCATTTTATGCTGAGGTGACAGATGAC
ATGAAAACAGCCAAAGGTGGTGGTGTCCAAGATTCTGGTGAATTCATTGA
TCTGTATTACCTACCAAGGACTGATGCTAAAGATTTTGCTCTTGATGAGA
GATATGTAAAGCCTTCAAGCTTCATTGCAGCCATAatgtggtttttcatc
aatcagcaaaaataaataaaaatgaaaaataatttttatttaagtttcat
tttcattttttttgtagtaTTTTGTAATCaatcagtttgaatgataaaaa
tcatttttatatttattgGACTGTTAGGGCTTTTCCTCATTTTATTTTCT
TCCTTAGAAATACAAtacaataaaatgaaaatgcttttgaTCTTTACCTG
TAATTTTTAATTAtagaataaacaaaacaaaacatggAAGAATTAAAAAT
CAGTGATATGCAACTGGCTCCTTTTGTTGACTCCGACGAATTACCAATCG
GACGCGTTGCTTTCAAACAGGTGAAACCAGTTAATAGTGGGTGTTCATTG
AAAAAGGGAAATTATATAAATGCAAATTCTGATAATTATGTCCTaacttt
tcaatttatttttcgaaaatccattATCATTACATTAAGAGTTGAATATC
TCTTGAACAAAGAGCTTCCATCtttatatttataatttttcgTTACTCCA
GTGagacaataaattttgagaattttaatcTGTTCCCACGTTATTCCAAA
AACAATCAATctcttattattattatttgacGAAAGTTTTCTTTTAGGTA
GATTTACATAGAATTCCCATTTCCGATCAAGATCTCCAAATTTTTATAAA
GCTGAtgaaaatcaatgttttttttctttcagaatgGATGCAAACGCCTT
TGGGATTACGTGGATTACAAAGATCAGTAAGCACTCGTGACAGCGTAttc
cacagatatcttatatgaaacaatagatagagctactctgtatttccctA
GCAACAACAGTTGAcgcaaaataatgcgccatcgTTGCTGAAAGTAGACc
acagttcggtaccggcaatttgcTCAAGCAAAATCATTGAATTCCAAAGT
CTATCGGCGCGAAAATGATTTAATGTCGACTTTTGCATATGATTTTGACG
AGATATTTAGCATCATTAGTTTAACATTCGTTCTTTTATCTTAGAATTCA
AGCTCTTGTCTACAACAAAACCAGAGATGCTTTTGTTCTACGCAAAGAAT
TCAGACCTGGTATGAAAAATGTATTAAATTATAATCGGAAAGTGATGAGA
TTGAACAAGTTCCTTTCTTTCTCTCTCCCACTTTCAACGGAATTCGGCAT
TTTAGTTGCTGTACATCTTCTTATCCAATCTACAGGGTGTCCTTTTAAAA
AAGTACTTTGTCAGACCACTTCTTAGTTCTATAAGTAGAAGAATAATAAG
AAGTTTCTTCTAAATACAGATCACAATAATGCAACAATGAAGCACAAAAG
GTAGAGATTAACATTGTGATTACCGTAATAAAATAATTAACATTTCATTC
AATGAATgtcttttttaaaaaacaattaaagATCGAAGTAATTAAAAAGa
gtactttttatatttttgattgtGATACAAAcgcaaatattttttcaata
acgATTTTCAGGACACCCTGTAGTGTGAATCCATATCCTTGTACTTTGCG
AGTTTGGAGAAATACTCCAGGTAATTTTTTGTCTATTCCTTTTATTTACA
GCACCTTATCTGAACATCAATtccaaaatgttaaaagaagaagtttcaga
cattgaaaataaatcaTCTGAAAAGAAAGAATTCAAAACAGTTGCTCCCT
TTGAGCTTGGTGTCACTTATGAATTATGTGCTGGTATAGTTGACCAAAAA
CGTCCTCTAGTTGAAATTACAAAAGATGCAATCTCTCAAATGATGGGTTA
TAACGTAGAAGAGAAACAAATCAAGCGAATTTATCAGACCAATCATGTTG
GATATTCAGGTGACCGATGTGATATATACATTGTGGAAGTGACAGATGAA
ATGttgataaaagatttcaaaccTGATGCTGATCTcgttgaatattttta
tttgtcaaGGAATGATGCTCAGGAGTTTGCAACGAGTGATGAATACGTGA
AAAATAGTAATGTTATTGCATCTATATTATGGTGTTTCTTGCACAATATC
TTTTGAGCTTGTGGTTGGCTCATAATGTTTCatcattttaaaaagaataa
tcAAATATGTTTGAGAGATTCTGCCGAAAGATACTTTGTCGACTAAAACC
AATAAAATCGAAATCTTTCGAAAAATGTTCAAAGTATGCGAGGGGTCTGG
AGCCTTGTTTATATAAAGAGATTTCGCCAAGGACCTTGGAATGGGTTGCA
AGTTGAAAATTGTAAATAAATATCATGCATTTAAATGTTTTGACTTAATT
CTACATGGGAATCTATCTGGCTTTTCCAATATACAGTGTGtctcaaaaaa
agtcaaaaaaattttatataaactaaaatcctcataatttgtgccaaatt
ttagTCCACGAATACTTATTTTTCAGTATCAAAAACCTTTGCACTCATCT
TTGGGAATTTGgatatctattgattgaacagagaattattgtcttatttc
aattattctatACCCAGTTTAGATgttgagttttgaggattttactgTGT
ATtaaaatttgtccgcttttttttgggacacgctgtaaaattaattttag
ctATTCTTATTTTTACGTAATAATGATATAGTTTGCAAAACATTGAGATA
aacttttctcaattttttttcccaAAGAGATATTATATTATGAAGTTTAT
GTATTGACAACATTACTGTAACGACTATTTAATTGCAACAAAGTTGATTT
TGATCTTTTACCAATTGATGTGCATTTATAGGTAATGAATGACGTCAGTT
AAATCAAGATGATGCCAGCACCTTTTCATTAATTACTTCACTCTGTTGTA
CTATGAAAAAtctctattttattttatattttagtatttttcgCAGTAAT
CCTTTGGTGGGTTATTGTATTTTATATTTGAAT Coding sequence (CDS) from alignment at scaffold_189:247720..252652+ >TCONS_00050809 ID=TCONS_00050809|Name=TCONS_00050809|organism=Clytia hemisphaerica|type=CDS|length=2604bp|location=Sequence derived from alignment at scaffold_189:247720..252652+ (Clytia hemisphaerica) atggAAGAATTAAAAATCAGTGATATGCAACTGGCTCCTTTTGTTGACTC CGACGAATTACCAATCGGACGCGTTGCTTTCAAACAGaatgGATGCAAAC GCCTTTGGGATTACGTGGATTACAAAGATCAAATTCAAGCTCTTGTCTAC AACAAAACCAGAGATGCTTTTGTTCTACGCAAAGAATTCAGACCTGCACC TTATCTGAACATCAATtccaaaatgttaaaagaagaagtttcagacattg aaaataaatcaTCTGAAAAGAAAGAATTCAAAACAGTTGCTCCCTTTGAG CTTGGTGTCACTTATGAATTATGTGCTGGTATAGTTGACCAAAAACGTCC TCTAGTTGAAATTACAAAAGATGCAATCTCTCAAATGATGGGTTATAACG TAGAAGAGAAACAAATCAAGCGAATTTATCAGACCAATCATGTTGGATAT TCAGGTGACCGATGTGATATATACATTGTGGAAGTGACAGATGAAATGtt gataaaagatttcaaaccTGATGCTGATCTcgttgaatatttttatttgt caaGGAATGATGCTCAGGAGTTTGCAACGAGTGATGAATACGTGAAAAAT AGTAATGTTATTGCATCTATATTATGGTGTTTCTTGCACAATATCTTTTG AatggAAGAATTAAAAATCAGTGATATGCAACTGGCTCCTTTTGTTGACT CCGACGAATTACCAATCGGACGCGTTGCTTTCAAACAGaatgGATGCAAA CGCCTTTGGGATTACGTGGATTACAAAGATCAAATTCAAGCTCTTGTCTA CAACAAAACCAGAGATGCTTTTGTTCTACGCAAAGAATTCAGACCTGCAC CTTATCTGAACATCAATtccaaaatgttaaaagaagaagtttcagacatt gaaaataaatcaTCTGAAAAGAAAGAATTCAAAACAGTTGCTCCCTTTGA GCTTGGTGTCACTTATGAATTATGTGCTGGTATAGTTGACCAAAAACGTC CTCTAGTTGAAATTACAAAAGATGCAATCTCTCAAATGATGGGTTATAAC GTAGAAGAGAAACAAATCAAGCGAATTTATCAGACCAATCATGTTGGATA TTCAGGTGACCGATGTGATATATACATTGTGGAAGTGACAGATGAAATGt tgataaaagatttcaaaccTGATGCTGATCTcgttgaatatttttatttg tcaaGGAATGATGCTCAGGAGTTTGCAACGAGTGATGAATACGTGAAAAA TAGTAATGTTATTGCATCTATATTATGGTGTTTCTTGCACAATATCTTTT GAatggAAGAATTAAAAATCAGTGATATGCAACTGGCTCCTTTTGTTGAC TCCGACGAATTACCAATCGGACGCGTTGCTTTCAAACAGaatgGATGCAA ACGCCTTTGGGATTACGTGGATTACAAAGATCAAATTCAAGCTCTTGTCT ACAACAAAACCAGAGATGCTTTTGTTCTACGCAAAGAATTCAGACCTGCA CCTTATCTGAACATCAATtccaaaatgttaaaagaagaagtttcagacat tgaaaataaatcaTCTGAAAAGAAAGAATTCAAAACAGTTGCTCCCTTTG AGCTTGGTGTCACTTATGAATTATGTGCTGGTATAGTTGACCAAAAACGT CCTCTAGTTGAAATTACAAAAGATGCAATCTCTCAAATGATGGGTTATAA CGTAGAAGAGAAACAAATCAAGCGAATTTATCAGACCAATCATGTTGGAT ATTCAGGTGACCGATGTGATATATACATTGTGGAAGTGACAGATGAAATG ttgataaaagatttcaaaccTGATGCTGATCTcgttgaatatttttattt gtcaaGGAATGATGCTCAGGAGTTTGCAACGAGTGATGAATACGTGAAAA ATAGTAATGTTATTGCATCTATATTATGGTGTTTCTTGCACAATATCTTT TGAatggAAGAATTAAAAATCAGTGATATGCAACTGGCTCCTTTTGTTGA CTCCGACGAATTACCAATCGGACGCGTTGCTTTCAAACAGaatgGATGCA AACGCCTTTGGGATTACGTGGATTACAAAGATCAAATTCAAGCTCTTGTC TACAACAAAACCAGAGATGCTTTTGTTCTACGCAAAGAATTCAGACCTGC ACCTTATCTGAACATCAATtccaaaatgttaaaagaagaagtttcagaca ttgaaaataaatcaTCTGAAAAGAAAGAATTCAAAACAGTTGCTCCCTTT GAGCTTGGTGTCACTTATGAATTATGTGCTGGTATAGTTGACCAAAAACG TCCTCTAGTTGAAATTACAAAAGATGCAATCTCTCAAATGATGGGTTATA ACGTAGAAGAGAAACAAATCAAGCGAATTTATCAGACCAATCATGTTGGA TATTCAGGTGACCGATGTGATATATACATTGTGGAAGTGACAGATGAAAT GttgataaaagatttcaaaccTGATGCTGATCTcgttgaatatttttatt tgtcaaGGAATGATGCTCAGGAGTTTGCAACGAGTGATGAATACGTGAAA AATAGTAATGTTATTGCATCTATATTATGGTGTTTCTTGCACAATATCTT TTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00050809-exon-scaffold_189-1491911889:247720..247855 | TCONS_00050809-exon-scaffold_189-1491911889:247720..247855 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1510915933:247720..247855 | TCONS_00050809-exon-scaffold_189-1510915933:247720..247855 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1575043694:247720..247855 | TCONS_00050809-exon-scaffold_189-1575043694:247720..247855 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1491911889:248159..248202 | TCONS_00050809-exon-scaffold_189-1491911889:248159..248202 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1510915933:248159..248202 | TCONS_00050809-exon-scaffold_189-1510915933:248159..248202 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1575043694:248159..248202 | TCONS_00050809-exon-scaffold_189-1575043694:248159..248202 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1491911889:248679..248743 | TCONS_00050809-exon-scaffold_189-1491911889:248679..248743 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1510915933:248679..248743 | TCONS_00050809-exon-scaffold_189-1510915933:248679..248743 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1575043694:248679..248743 | TCONS_00050809-exon-scaffold_189-1575043694:248679..248743 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1491911889:249321..249656 | TCONS_00050809-exon-scaffold_189-1491911889:249321..249656 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1510915933:249321..249656 | TCONS_00050809-exon-scaffold_189-1510915933:249321..249656 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1575043694:249321..249656 | TCONS_00050809-exon-scaffold_189-1575043694:249321..249656 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1491911889:249986..250089 | TCONS_00050809-exon-scaffold_189-1491911889:249986..250089 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1510915933:249986..250089 | TCONS_00050809-exon-scaffold_189-1510915933:249986..250089 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1575043694:249986..250089 | TCONS_00050809-exon-scaffold_189-1575043694:249986..250089 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1491911889:250452..250495 | TCONS_00050809-exon-scaffold_189-1491911889:250452..250495 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1510915933:250452..250495 | TCONS_00050809-exon-scaffold_189-1510915933:250452..250495 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1575043694:250452..250495 | TCONS_00050809-exon-scaffold_189-1575043694:250452..250495 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1491911889:250764..250828 | TCONS_00050809-exon-scaffold_189-1491911889:250764..250828 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1510915933:250764..250828 | TCONS_00050809-exon-scaffold_189-1510915933:250764..250828 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1575043694:250764..250828 | TCONS_00050809-exon-scaffold_189-1575043694:250764..250828 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1491911889:251321..252652 | TCONS_00050809-exon-scaffold_189-1491911889:251321..252652 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1510915933:251321..252652 | TCONS_00050809-exon-scaffold_189-1510915933:251321..252652 | Clytia hemisphaerica | exon |
TCONS_00050809-exon-scaffold_189-1575043694:251321..252652 | TCONS_00050809-exon-scaffold_189-1575043694:251321..252652 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_189 | supercontig | scaffold_189:247720..252652 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR015797 | NUDIX_hydrolase_dom-like |
Vocabulary: Molecular Function
Term | Definition |
GO:0016787 | hydrolase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0016787 |
hydrolase activity |
Blast
BLAST of TCONS_00050809 vs. Swiss-Prot (Human)
Match: NUD14 (Uridine diphosphate glucose pyrophosphatase OS=Homo sapiens GN=NUDT14 PE=1 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 8.456e-31 Identity = 60/163 (36.81%), Postives = 96/163 (58.90%), Query Frame = 2
Query: 89 CTQSKYVVPGRVTFNQNGRQRKWDYVKVHDSVSILIYNKTRDAFVLVRQFRPAPYLNINSKMLKEEVSDIENKSSEKKDFKTVAPFELGVTYELCAGIVDQK-RSLVEIAQSEIEEETGYIVPLENIKQIFRH-TATGHSGNMGTAFYAEVTDDMKTAKGGGV 571
C S Y+ P + + QNG Q+ WD++K HDSV++L++N +R + VLV+QFRPA Y + ++ ++ ++ + P GVT ELCAG+VDQ SL E+A E EE GY + +++++ + + G +G+ T FY EVTD ++ GGG+
Sbjct: 12 CAASPYLRPLTLHYRQNGAQKSWDFMKTHDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDG--PRELQPALPGSAGVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGL 172 HSP 2 Score: 93.2041 bits (230), Expect = 7.363e-21 Identity = 57/198 (28.79%), Postives = 97/198 (48.99%), Query Frame = 2
Query: 677 FKQNGCKRLWDYVDYKDQIQALVYNKTRDAFVLRKEFRPAPYLNINSKMLKEEVSDIENKSSEKKEFKTVAPFELGVTYELCAGIVDQK-RPLVEITKDAISQMMGYNVEEKQIKRIYQ-TNHVGYSGDRCDIYIVEVTDEM-------LIKDFKPDADLVEYFYLSRNDAQEFATSDEYVKNSNVIASILWCFLHNI 1243
++QNG ++ WD++ D + L++N +R + VL K+FRPA Y + ++ ++ +E + P GVT ELCAG+VDQ L E+ + GY++ ++R+ + VG +G R ++ EVTD L++ + +L+E +L AQ FA + K VI + W FL +
Sbjct: 25 YRQNGAQKSWDFMKTHDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDG--PRELQPALPGSAGVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVE----EGELIEVVHLPLEGAQAFADDPDIPKTLGVIFGVSW-FLSQV 215
The following BLAST results are available for this feature:
|