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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050810 ID=TCONS_00050810|Name=TCONS_00050810|organism=Clytia hemisphaerica|type=transcript|length=2047bp
TGGAAATGGAACAGGGTGGGAATGGAACAGGATTGAAAAAGAACAGGGTC
AGGGTGGAAAAGGAACAGGGAAGGGTTAACAATAATAAAACAAGATTATT
ACTATAAAACAAATTCCTTTCAGCTAGACAAACACAAACACAACGGTCGA
AATATTTAAGATGATATAATAactaacaaaatcaaaaaaaccgACACTAT
GGTCAACTATGCCGACATGACGTCATATGACGATGTTTATTACGTACCAC
CGCAAGTCAAACGCGAGACGACAAAAACGACGACGTCAAAATCGATTTCT
ACCGTACGTGAAGATGATTGGAAATCTTTAGCAAACTCGATTACTTATCT
TTTCCATAAGAAACAATTACAAAAGTTAGAATTGGATATTTTGAACGAGA
AAGTTAGAAATGTCCATTCTCATTCGTCAAAGAAAGGTGAAACCATTGTG
GAATGTTACAAAGATTCCATATTGAAAAAAGGTATGATTGTGCTACGAGA
GGCcatcaaagaaaagaaaggaaacGAGCTTTTGGAACGCTTAGGTGATG
TTTGGACTTCCTTCTATAAAAACATTCTACCAATGTTACTCGCTATTTTT
TATCCCATACAAGAACAAGGAACGACTATTCGAGCAGTCACACTTATCGG
GTTCCGTGATATGGTGTTGCTGAAAACTAAAATTGCGGACGCGTTAGAAC
CAGGTAGTAAAGCATCTCCTGAGATTAAACAAATGTTATTAGTATTGGCT
AGCGTACATGATGGTCCACCGCCTAGTGATAATTACCTGAGACTAGAGCA
GCTGGTAGCTCGTGTTATTTCACCCTACTTAGGATCTAAAGGACTTCATA
CACCACAAATGTCAATGTCTAAACGTAACTCGATCGATCACAAGTCAAGC
AACGGGAACGGTTTACGAGAACGAAAATTATCCATATCTAAAGTTTTAAA
GGAAGAAGTAACCCGGAAATTTCGCCGTTCAGGTAGTTTAACCGGACAAA
CGAATAATACGGAAACGAACAATAATACTAGTTTTAAGAGGCGCTTTAAA
ATTGGTGATAACCCGCCCGTTCAGTCGCAGGCGGTAGTACCGCCCGTTGT
GAAAACCTCGTTAGCAAATGATTCGTCTATTGAGATTTCGAAAGCATCTG
AAGATAGTGATATGTTAGCATATCTTGAGGAGCGTAAACAAAGATGGAAG
AATCGAGATGAGATGCTTGGATCTGAATCCTTATTAGAATAATAAAATGA
TTGGTTCAGTCaagttttgttaaaaatctttgtttttctttttttttttt
ctcaatgcatCCTTTTAGAAAGCgaaataagaaaattatttatttggCTG
TTTAAAAATTCTGTTATTAACGAAGGCCGAAATGCCTTTTTATGTATCTT
TATCCCTTTTCCGTTCCGATGTCGGCATATGACGACAAATGATCGTACCT
TAAAAGAAACTCATCGGTTAAAGGGCTAGAATAGTGTAATACTGAAAACA
ATCAGTATTTTACCCATCAAGACACCTCTGTCAAACAGCCAGTTGATCTC
ATCTCCATTCTCAAATAATTGACCGAAAATTCGTCCCCGGTGTGAAGGAA
AGACTGGAAAATCATTCCCAATTAAATAACTTTATCTACCCTAGGAAAAA
AGCGTATAATcaattgacttccaagcccggaaggctagactcgagactcc
aggatgagaaatgaagccatttatttcccatccagaacacccGCACGTAG
TTATTACACAAACGatggattgaaactaaaatctatctaccactagatac
aatccgccGGCATGATTACGGCgtgttctatgcgcgttttggatgcgaaa
taagtggcttcaatttctcttgcctgagaagggttacaGTTTTGCCTCCA
GCcattcgggcttgaaactcaatgttatAATCCCTATTGGGTTTTTGTAT
AGGAAGAACCAGAAATGATCACGTAAAGTTTAAATGCCActgatattttt
aaagaatattttatgaACCAAGGtaaatgtaaatattttaagaaaaa Run BLAST on NCBI protein sequence of TCONS_00050810-protein >TCONS_00050810-protein ID=TCONS_00050810-protein|Name=TCONS_00050810-protein|organism=Clytia hemisphaerica|type=polypeptide|length=347bp
MVNYADMTSYDDVYYVPPQVKRETTKTTTSKSISTVREDDWKSLANSITY
LFHKKQLQKLELDILNEKVRNVHSHSSKKGETIVECYKDSILKKGMIVLR
EAIKEKKGNELLERLGDVWTSFYKNILPMLLAIFYPIQEQGTTIRAVTLI
GFRDMVLLKTKIADALEPGSKASPEIKQMLLVLASVHDGPPPSDNYLRLE
QLVARVISPYLGSKGLHTPQMSMSKRNSIDHKSSNGNGLRERKLSISKVL
KEEVTRKFRRSGSLTGQTNNTETNNNTSFKRRFKIGDNPPVQSQAVVPPV
VKTSLANDSSIEISKASEDSDMLAYLEERKQRWKNRDEMLGSESLLE Run BLAST on NCBI transcript from alignment at scaffold_189:262040..264946+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050810 ID=TCONS_00050810|Name=TCONS_00050810|organism=Clytia hemisphaerica|type=transcript|length=2907bp|location=Sequence derived from alignment at scaffold_189:262040..264946+ (Clytia hemisphaerica)
TGGAAATGGAACAGGGTGGGAATGGAACAGGATTGAAAAAGAACAGGGTC
AGGGTGGAAAAGGAACAGGGAAGGGTTAACAATAATAAAACAAGATTATT
ACTATAAAACAAATTCCTTTCAGCTAGACAAACACAAACACAACGGTCGA
AATATTTAAGATGATATAATAactaacaaaatcaaaaaaaccgACACTAT
GGTCAACTATGCCGACATGACGTCATATGACGATGTTTATTACGTACCAC
CGCAAGTCAAACGCGAGACGACAAAAACGACGACGTCAAAATCGATTTCT
ACCGTACGTGAAGATGATTGGAAATCTTTAGCAAACTCGATTACTTATCT
TTTCCATAAGAAACAATTACAAAAGTTAGAATTGGATATTTTGAACGAGA
AAGTTAGAAATGTCCATTCTCATTCGTCAAAGAAAGGTGAAACCATTGTG
GAATGTTACAAAGATTCCATATTGAAAAAAGGTTTGTCATTGTCAATCAC
TATTTTTTAcctttattttgttgttaaggTAGATAAGTTTATTGTTTATT
GcatttcatgatatgcaccatcaTTGCAATGGATGGTCTTCCATgtcacc
caatagctgattgggtGAAAGTGAccttacgtcacttacaaccaatcagc
tattgggtccatgatgtaatatcagaagacattgcagtgttgAATATCAT
GAAAAGGTTTGTTATAAGAATCTCATGTTTGAAAACACAAGGCTTTGGTT
TTCATAGTTGTTCGAGCAAGTTAAGGATATTATTTTAATGCTTTGCGGAC
TCTTAAACATCCAATTTCCTGTGGAGGCTCTACAAATTAACTTAATTGGT
TGGTTAGTTGTTGAGTTGCCTTCTTtcagtgaatttttttctaattttta
tcaaaaaggtGGTTGACCATAACCTCTCGATTATAATTGAACCCGATTTT
CGATAAATAAATCTTTCGGCAactttcagctaaaaaacggttggttaaat
gtttttttggacttttctAAATTGGATCAtcatttctttgatattttttg
tgcTAAAGTAGTGTATCATCATAGGTGAATAACGACTGAACcagattttt
aaaatgaatCGCTATTCCTAAGCATATTGGAGCATATGTAAATAAAGTTC
TACACCGaataatccaatttttgactagATTTTCTTTATCCCACAATACC
AATAACTAAGGTACCAGCTTTACTCGTGATTGATTCAATCTTTAATctga
ttttgaatttaatgttttttttgttgattaaccaggtaggtctataaaag
tatcacttgtttttttatatattcaACTGTTATAATTTCAGGTATGATTG
TGCTACGAGAGGCcatcaaagaaaagaaaggaaacGAGCTTTTGGAACGC
TTAGGTGATGTTTGGACTTCCTTCTATAAAAACATTCTACCAATGTTACT
CGCTATTTTTTATCCCATACAAGAACAAGGAACGACTATTCGAGCAGTCA
CACTTATCGGGTTCCGTGATATGGTGTTGCTGAAAACTAAAATTGCGGAC
GCGTTAGAACCAGGTAGTAAAGCATCTCCTGAGATTAAACAAATGTTATT
AGTATTGGCTAGCGTACATGATGGTCCACCGCCTAGTGATAATTACCTGA
GACTAGAGCAGCTGGTAGCTCGTGTTATTTCACCCTACTTAGGATCTAAA
GGACTTCATACACCACAAATGTCAATGTCTAAACGTAACTCGATCGATCA
CAAGTCAAGCAACGGGAACGGTTTACGAGAACGAAAATTATCCATATCTA
AAGTTTTAAAGGAAGAAGTAACCCGGAAATTTCGCCGTTCAGGTAGTTTA
ACCGGACAAACGAATAATACGGAAACGAACAATAATACTAGTTTTAAGAG
GCGCTTTAAAATTGGTGATAACCCGCCCGTTCAGTCGCAGGCGGTAGTAC
CGCCCGTTGTGAAAACCTCGTTAGCAAATGATTCGTCTATTGAGATTTCG
AAAGCATCTGAAGATAGTGATATGTTAGCATATCTTGAGGAGCGTAAACA
AAGATGGAAGAATCGAGATGAGATGCTTGGATCTGAATCCTTATTAGAAT
AATAAAATGATTGGTTCAGTCaagttttgttaaaaatctttgtttttctt
ttttttttttctcaatgcatCCTTTTAGAAAGCgaaataagaaaattatt
tatttggCTGTTTAAAAATTCTGTTATTAACGAAGGCCGAAATGCCTTTT
TATGTATCTTTATCCCTTTTCCGTTCCGATGTCGGCATATGACGACAAAT
GATCGTACCTTAAAAGAAACTCATCGGTTAAAGGGCTAGAATAGTGTAAT
ACTGAAAACAATCAGTATTTTACCCATCAAGACACCTCTGTCAAACAGCC
AGTTGATCTCATCTCCATTCTCAAATAATTGACCGAAAATTCGTCCCCGG
TGTGAAGGAAAGACTGGAAAATCATTCCCAATTAAATAACTTTATCTACC
CTAGGAAAAAAGCGTATAATcaattgacttccaagcccggaaggctagac
tcgagactccaggatgagaaatgaagccatttatttcccatccagaacac
ccGCACGTAGTTATTACACAAACGatggattgaaactaaaatctatctac
cactagatacaatccgccGGCATGATTACGGCgtgttctatgcgcgtttt
ggatgcgaaataagtggcttcaatttctcttgcctgagaagggttacaGT
TTTGCCTCCAGCcattcgggcttgaaactcaatgttatAATCCCTATTGG
GTTTTTGTATAGGAAGAACCAGAAATGATCACGTAAAGTTTAAATGCCAc
tgatatttttaaagaatattttatgaACCAAGGtaaatgtaaatatttta
agaaaaa Coding sequence (CDS) from alignment at scaffold_189:262040..264946+ >TCONS_00050810 ID=TCONS_00050810|Name=TCONS_00050810|organism=Clytia hemisphaerica|type=CDS|length=2088bp|location=Sequence derived from alignment at scaffold_189:262040..264946+ (Clytia hemisphaerica)
ATGGTCAACTATGCCGACATGACGTCATATGACGATGTTTATTACGTACC
ACCGCAAGTCAAACGCGAGACGACAAAAACGACGACGTCAAAATCGATTT
CTACCGTACGTGAAGATGATTGGAAATCTTTAGCAAACTCGATTACTTAT
CTTTTCCATAAGAAACAATTACAAAAGTTAGAATTGGATATTTTGAACGA
GAAAGTTAGAAATGTCCATTCTCATTCGTCAAAGAAAGGTGAAACCATTG
TGGAATGTTACAAAGATTCCATATTGAAAAAAGGTATGATTGTGCTACGA
GAGGCcatcaaagaaaagaaaggaaacGAGCTTTTGGAACGCTTAGGTGA
TGTTTGGACTTCCTTCTATAAAAACATTCTACCAATGTTACTCGCTATTT
TTTATCCCATACAAGAACAAGGAACGACTATTCGAGCAGTCACACTTATC
GGGTTCCGTGATATGGTGTTGCTGAAAACTAAAATTGCGGACGCGTTAGA
ACCAGGTAGTAAAGCATCTCCTGAGATTAAACAAATGTTATTAGTATTGG
CTAGCGTACATGATGGTCCACCGCCTAGTGATAATTACCTGAGACTAGAG
CAGCTGGTAGCTCGTGTTATTTCACCCTACTTAGGATCTAAAGGACTTCA
TACACCACAAATGTCAATGTCTAAACGTAACTCGATCGATCACAAGTCAA
GCAACGGGAACGGTTTACGAGAACGAAAATTATCCATATCTAAAGTTTTA
AAGGAAGAAGTAACCCGGAAATTTCGCCGTTCAGGTAGTTTAACCGGACA
AACGAATAATACGGAAACGAACAATAATACTAGTTTTAAGAGGCGCTTTA
AAATTGGTGATAACCCGCCCGTTCAGTCGCAGGCGGTAGTACCGCCCGTT
GTGAAAACCTCGTTAGCAAATGATTCGTCTATTGAGATTTCGAAAGCATC
TGAAGATAGTGATATGTTAGCATATCTTGAGGAGCGTAAACAAAGATGGA
AGAATCGAGATGAGATGCTTGGATCTGAATCCTTATTAGAATAAATGGTC
AACTATGCCGACATGACGTCATATGACGATGTTTATTACGTACCACCGCA
AGTCAAACGCGAGACGACAAAAACGACGACGTCAAAATCGATTTCTACCG
TACGTGAAGATGATTGGAAATCTTTAGCAAACTCGATTACTTATCTTTTC
CATAAGAAACAATTACAAAAGTTAGAATTGGATATTTTGAACGAGAAAGT
TAGAAATGTCCATTCTCATTCGTCAAAGAAAGGTGAAACCATTGTGGAAT
GTTACAAAGATTCCATATTGAAAAAAGGTATGATTGTGCTACGAGAGGCc
atcaaagaaaagaaaggaaacGAGCTTTTGGAACGCTTAGGTGATGTTTG
GACTTCCTTCTATAAAAACATTCTACCAATGTTACTCGCTATTTTTTATC
CCATACAAGAACAAGGAACGACTATTCGAGCAGTCACACTTATCGGGTTC
CGTGATATGGTGTTGCTGAAAACTAAAATTGCGGACGCGTTAGAACCAGG
TAGTAAAGCATCTCCTGAGATTAAACAAATGTTATTAGTATTGGCTAGCG
TACATGATGGTCCACCGCCTAGTGATAATTACCTGAGACTAGAGCAGCTG
GTAGCTCGTGTTATTTCACCCTACTTAGGATCTAAAGGACTTCATACACC
ACAAATGTCAATGTCTAAACGTAACTCGATCGATCACAAGTCAAGCAACG
GGAACGGTTTACGAGAACGAAAATTATCCATATCTAAAGTTTTAAAGGAA
GAAGTAACCCGGAAATTTCGCCGTTCAGGTAGTTTAACCGGACAAACGAA
TAATACGGAAACGAACAATAATACTAGTTTTAAGAGGCGCTTTAAAATTG
GTGATAACCCGCCCGTTCAGTCGCAGGCGGTAGTACCGCCCGTTGTGAAA
ACCTCGTTAGCAAATGATTCGTCTATTGAGATTTCGAAAGCATCTGAAGA
TAGTGATATGTTAGCATATCTTGAGGAGCGTAAACAAAGATGGAAGAATC
GAGATGAGATGCTTGGATCTGAATCCTTATTAGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050810-exon-scaffold_189-1491911889:262040..262520 | TCONS_00050810-exon-scaffold_189-1491911889:262040..262520 | Clytia hemisphaerica | exon |
| TCONS_00050810-exon-scaffold_189-1510915933:262040..262520 | TCONS_00050810-exon-scaffold_189-1510915933:262040..262520 | Clytia hemisphaerica | exon |
| TCONS_00050810-exon-scaffold_189-1575043694:262040..262520 | TCONS_00050810-exon-scaffold_189-1575043694:262040..262520 | Clytia hemisphaerica | exon |
| TCONS_00050810-exon-scaffold_189-1491911889:263381..264946 | TCONS_00050810-exon-scaffold_189-1491911889:263381..264946 | Clytia hemisphaerica | exon |
| TCONS_00050810-exon-scaffold_189-1510915933:263381..264946 | TCONS_00050810-exon-scaffold_189-1510915933:263381..264946 | Clytia hemisphaerica | exon |
| TCONS_00050810-exon-scaffold_189-1575043694:263381..264946 | TCONS_00050810-exon-scaffold_189-1575043694:263381..264946 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_189 | supercontig | scaffold_189:262040..264946 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0031625 | ubiquitin protein ligase binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006511 |
ubiquitin-dependent protein catabolic process |
| molecular_function |
GO:0031625 |
ubiquitin protein ligase binding |
Blast
BLAST of TCONS_00050810 vs. Swiss-Prot (Human)
Match: PRR5 (Proline-rich protein 5 OS=Homo sapiens GN=PRR5 PE=1 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 3.170e-37 Identity = 73/179 (40.78%), Postives = 113/179 (63.13%), Query Frame = 1
Query: 319 WKSLANSITYLFHKKQLQKLELDILNEKVRNVHSHSSKKGETIVECYKDSILKKGMIVLREAIKEKKGNELLERLGDVWTSFYKNILPMLLAIFYPIQEQGTTIRAVTLIGFRDMVLLKTKIADALEPG-SKASPEIKQMLLVLASVHDGPPPSDNYLRLEQLVARVISPYLGSKGLHT 852
W S+ N + +F +K L EL LNE VR + ++ G E ++ +L KGM++LR+ I+ +G +LL+ L + W F+ ++LPML AIFYP+Q + ++R + L+ FR+ + L K+ DAL ++ P I QMLLVL VH+ +++YLRLE LV +V+SPYLG+ GLH+
Sbjct: 43 WNSIHNGVIAVFQRKGLPDQELFSLNEGVRQLLK--TELGSFFTEYLQNQLLTKGMVILRDKIRFYEGQKLLDSLAETWDFFFSDVLPMLQAIFYPVQGKEPSVRQLALLHFRNAITLSVKLEDALARAHARVPPAIVQMLLVLQGVHESRGVTEDYLRLETLVQKVVSPYLGTYGLHS 219
The following BLAST results are available for this feature:
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