TCONS_00050865 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050865
Unique NameTCONS_00050865
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length861

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050865 ID=TCONS_00050865|Name=TCONS_00050865|organism=Clytia hemisphaerica|type=transcript|length=861bp
AATCATTTGCTTTAGTTTTTATCCCTTCAGTCGCGTTAAACAGTAGCATA
TTAAGACCTTGCCGTAATCTTAGTATACATAGCATCATTACACCATCTTT
TTAACATTCAATTCACGTACAAAAGTTTCCAGAGGCTCCTCAACAATGGA
AAATGTCCCTcaacaaattattattttttaagggTAGAAGCAgccataaa
tctaaaaatttaccGTCTCCTTAGAAAAATTCACCGTTGTTTTGTTTCTT
AAATTCAAGAAAATGTACCAGTCCCCACAAACtaccactttaaaaaaatc
atcagcACTATAATATAGTTAATCAGCTAATCACAATAGCTATGGTACTA
TTCGAGACAGCAGTATTATTTCCAGATAGGGTACTATTCATGATCTGTAC
ACATGGTTTATCAAGACATTCTTTCACTTCATGTTGGGCACCTACGCAAG
ATTTTCCGCCATTTCTCGGTTCCGGTTTATTACAGTCTCGATTACGTTCA
GTAAGTCCCCTTCCACACGTAGCTGAGCATTTTGACCATGAATTCCATTG
CCCAAAACCACCATCGACAGGACAAGGTAATATATTTTCTACACATTGTT
GTTTCTCAATTCCGTTTTTGGCCTTATCGGGGCAATCTTTACCCCCGTTT
GCAGCCACCGGATTATTACAAGTTCTTGTGCGCGTATGATAGCCTTTATT
ACAGTTTGGTTCACATACTGTCCATTGTGCCCAAGAACCCCATTGAGCAT
CTATTGGACATGGTTTCTCTGAGCATTGACTGGTTTCTACGTGAGGACCA
ATGAGAACGCACGGTTTACCAAAACCGGAAGGCCTAGGATTCGTACAATT
TCTGGATCGAC
Run BLAST on NCBI

protein sequence of TCONS_00050865-protein

>TCONS_00050865-protein ID=TCONS_00050865-protein|Name=TCONS_00050865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
RSRNCTNPRPSGFGKPCVLIGPHVETSQCSEKPCPIDAQWGSWAQWTVCE
PNCNKGYHTRTRTCNNPVAANGGKDCPDKAKNGIEKQQCVENILPCPVDG
GFGQWNSWSKCSATCGRGLTERNRDCNKPEPRNGGKSCVGAQHEVKECLD
KPCVQIMNSTLSGNNTAVSNSTIAIVIS
Run BLAST on NCBI

transcript from alignment at scaffold_189:341288..342148

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050865 ID=TCONS_00050865|Name=TCONS_00050865|organism=Clytia hemisphaerica|type=transcript|length=861bp|location=Sequence derived from alignment at scaffold_189:341288..342148 (Clytia hemisphaerica)
GTCGATCCAGAAATTGTACGAATCCTAGGCCTTCCGGTTTTGGTAAACCG
TGCGTTCTCATTGGTCCTCACGTAGAAACCAGTCAATGCTCAGAGAAACC
ATGTCCAATAGATGCTCAATGGGGTTCTTGGGCACAATGGACAGTATGTG
AACCAAACTGTAATAAAGGCTATCATACGCGCACAAGAACTTGTAATAAT
CCGGTGGCTGCAAACGGGGGTAAAGATTGCCCCGATAAGGCCAAAAACGG
AATTGAGAAACAACAATGTGTAGAAAATATATTACCTTGTCCTGTCGATG
GTGGTTTTGGGCAATGGAATTCATGGTCAAAATGCTCAGCTACGTGTGGA
AGGGGACTTACTGAACGTAATCGAGACTGTAATAAACCGGAACCGAGAAA
TGGCGGAAAATCTTGCGTAGGTGCCCAACATGAAGTGAAAGAATGTCTTG
ATAAACCATGTGTACAGATCATGAATAGTACCCTATCTGGAAATAATACT
GCTGTCTCGAATAGTACCATAGCTATTGTGATTAGCTGATTAACTATATT
ATAGTgctgatgatttttttaaagtggtaGTTTGTGGGGACTGGTACATT
TTCTTGAATTTAAGAAACAAAACAACGGTGAATTTTTCTAAGGAGACggt
aaatttttagatttatggcTGCTTCTAcccttaaaaaataataatttgtt
gAGGGACATTTTCCATTGTTGAGGAGCCTCTGGAAACTTTTGTACGTGAA
TTGAATGTTAAAAAGATGGTGTAATGATGCTATGTATACTAAGATTACGG
CAAGGTCTTAATATGCTACTGTTTAACGCGACTGAAGGGATAAAAACTAA
AGCAAATGATT

Coding sequence (CDS) from alignment at scaffold_189:341288..342148

>TCONS_00050865 ID=TCONS_00050865|Name=TCONS_00050865|organism=Clytia hemisphaerica|type=CDS|length=537bp|location=Sequence derived from alignment at scaffold_189:341288..342148 (Clytia hemisphaerica)
CGATCCAGAAATTGTACGAATCCTAGGCCTTCCGGTTTTGGTAAACCGTG
CGTTCTCATTGGTCCTCACGTAGAAACCAGTCAATGCTCAGAGAAACCAT
GTCCAATAGATGCTCAATGGGGTTCTTGGGCACAATGGACAGTATGTGAA
CCAAACTGTAATAAAGGCTATCATACGCGCACAAGAACTTGTAATAATCC
GGTGGCTGCAAACGGGGGTAAAGATTGCCCCGATAAGGCCAAAAACGGAA
TTGAGAAACAACAATGTGTAGAAAATATATTACCTTGTCCTGTCGATGGT
GGTTTTGGGCAATGGAATTCATGGTCAAAATGCTCAGCTACGTGTGGAAG
GGGACTTACTGAACGTAATCGAGACTGTAATAAACCGGAACCGAGAAATG
GCGGAAAATCTTGCGTAGGTGCCCAACATGAAGTGAAAGAATGTCTTGAT
AAACCATGTGTACAGATCATGAATAGTACCCTATCTGGAAATAATACTGC
TGTCTCGAATAGTACCATAGCTATTGTGATTAGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032235XLOC_032235Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050865-proteinTCONS_00050865-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050865-exon-scaffold_189-1491911889:341288..342148TCONS_00050865-exon-scaffold_189-1491911889:341288..342148Clytia hemisphaericaexon
TCONS_00050865-exon-scaffold_189-1510915933:341288..342148TCONS_00050865-exon-scaffold_189-1510915933:341288..342148Clytia hemisphaericaexon
TCONS_00050865-exon-scaffold_189-1575043694:341288..342148TCONS_00050865-exon-scaffold_189-1575043694:341288..342148Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_189supercontigscaffold_189:341288..342148 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.0665	10.7185	3.20372	1.92882	4.84308	5.21872	18.8185	19.255	9.76677	8.74671	6.50515	6.52306	1.3028	0.60132	1.35951	1.59159	1.75647	2.76329	1.73529	2.1185	2.73573	2.00159	6.30136	4.87803	0.642638	0.573539	1.19379	1.03516	3.5633	3.63044
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
Blast
[Close]
BLAST of TCONS_00050865 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 5.390e-31
Identity = 66/153 (43.14%), Postives = 84/153 (54.90%), Query Frame = -3 
Query:  401 RSRNCTNPRPSGFGKPCVLIGPHVETSQCSEKPCPIDAQWGSWAQWTVCEPNCNKGYHTRTRTCNNPVAANGGKDCPDKAKNGIEKQQCVENILPCPVDGGFGQWNSWSKCSATCGRGLTERNRDCNKPEPRNGGKSCVGAQHEVKECLDKPC 859
            RSR C  P P+  GKPC   G  +E   C  KPCP+D  W  W+ W  C  +C +G  TRTRTCNNP   +GG+ C     N +E   C  NI PCPV G +  W  W  CS +CG+G   R R CN P P  GG  C GA+ +++ C ++ C
Sbjct: 4552 RSRLCNQPLPANGGKPCQ--GSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPC---EGNAVEIIMC--NIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC 4697

HSP 2 Score: 111.694 bits (278), Expect = 1.139e-26
Identity = 62/153 (40.52%), Postives = 79/153 (51.63%), Query Frame = -3 
Query:  401 RSRNCTNPRPSGFGKPCVLIGPHVETSQCSEKPCPIDAQWGSWAQWTVCEPNCNKGYHTRTRTCNNPVAANGGKDCPDKAKNGIEKQQCVENILPCPVDGGFGQWNSWSKCSATCGRGLTERNRDCNKPEPRNGGKSCVGAQHEVKECLDKPC 859
            R+R C NP     G+PC   G  VE   C+ +PCP+   W +W  W  C  +C KG  TR R CNNP  A GG  C     +G E Q  V N   CP+ G +  W SWS CS +CG G  +R R C+ P P+ GG+ C G+  +   C   PC
Sbjct: 4609 RTRTCNNPSVQHGGRPCE--GNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYC-----DGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754

HSP 3 Score: 108.227 bits (269), Expect = 1.599e-25
Identity = 62/155 (40.00%), Postives = 85/155 (54.84%), Query Frame = -3 
Query:  401 RSRNCTNPRPSGFGKPCVLIGPHVETSQCSEKPCPIDAQWGSWAQWTVCEPNCNKGYHTRTRTCNNPVAANGGKDC--PDKAKNGIEKQQCVENILPCPVDGGFGQWNSWSKCSATCGRGLTERNRDCNKPEPRNGGKSCVGAQHEVKECLDKPC 859
            R+R C++P P   G+ C   G  V++  C+  PCP    W  W+ W  C   CN G   R RTC+NP  +NGG+ C  PD      + Q+C  ++  CPVDG +G W+SWS+CSA+CG G   R R C+ P P  GG+ C G   +V  C  + C
Sbjct: 4723 RTRGCSDPVPQYGGRKCE--GSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDS-----QIQRCNTDM--CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868

HSP 4 Score: 90.5077 bits (223), Expect = 9.685e-20
Identity = 45/114 (39.47%), Postives = 63/114 (55.26%), Query Frame = -3 
Query:  401 WGSWAQWTVCEPNCNKGYHTRTRTCNNPVAANGGKDCPDKAKNGIEKQQCVENILPCPVDGGFGQWNSWSKCSATCGRGLTERNRDCNKPEPRNGGKSCVGAQHEVKECLDKPC 742
            +  W+ W  C   C KG   R+R CN P+ ANGGK C     + +E + C     PCPVDG + +W+ W +C+ +CGRG   R R CN P  ++GG+ C G   E+  C  +PC
Sbjct: 4532 FSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPC---QGSDLEMRNCQNK--PCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPC 4640
The following BLAST results are available for this feature:
BLAST of TCONS_00050865 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN15.390e-3143.14Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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